Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d020642_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:7:126107073:126110894:-1 gene:Zm00001d020642 gene_biotype:protein_coding transcript_biotype:protein_coding description:Serine carboxypeptidase-like 49
Sequence

ATGTCGCCGGAGGCCGGACCAATCATGCGGCCCGCCGACCAGCTACTCCTCCCGTTCCTC
CTCCTGGCCGTTGCCTCCGTCGCTGCCGCCGGCGGCTCGTGGGAGAATGGATATGGGAGC
ATCCTCCGCCTCCCCTCCTCGTCTCCGCGCCGGTTCCCCCGCTCCGCGGCCGTCGACCTG
ATCCACGCGCTCAACCTCCACCCCGCCGACGCGTCCCCTCCCCTCTCCACCGCCGGCGTA
GAGGGCGCCCTCGCCCCCGCGGGGACCCTCGTCGAGAGGCCCATCCGCATCGCGTCCTTC
GCGAACGGAGGCGCCGCCACGTCGGTGGAGGACCTCGGCCACCACGCGGGGTATTACCGC
CTCGCCAACACCCACGACGCCAGGATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAG
GACGACCCCGTGGTGATCTGGCTCACGGGCGGGCCCGGCTGCAGCAGCGAGCTCGCGCTC
TTCTACGAGAACGGCCCCTTCAACATAGCGGACAACTTGTCGCTCGTCTGGAATGATTTT
GGTTGGGACAAGGCATCAAATCTTATCTATGTCGACCAGCCCACTGGAACTGGGTTTAGT
TACAGCTCGGATTCGCGTGACACTCGCCACAACGAAGCTACTATTAGCAATGATCTATAT
GATTTCCTGCAGGCCTTTTTTGCTGAGCACCCAAAGTATGCTAAAAATGATTTCTTCATA
ACTGGGGAATCATATGCTGGGCATTACATTCCTGCCTTTGCAAGTCGTGTGCACCAGGGA
AACAAGAACAATGAGGGCATTCACATTAACTTGAAGGGTTTTGCTATTGGCAACGGACTA
ACAGATCCAGCAATACAGTACAAGGCATACCCTGATTACGCATTGGATATGGGATTAATT
ACAAAAACACAATTTAACAGGATCAATAAAATAGTTCCAACTTGTGAATTCGCGGTCAAG
CTTTGTGGTACTTCTGGAACTGTATCTTGCCTTGCTGCGTACTTTGTCTGCAATACAATA
TTCAGTGCCATCAGGACAATCATAGGCAATAAAAATTATTACGACATCAGGAAACCATGC
ATCGGAAGCCTATGCTATGATTTCTCTAATTTGGAGAAATTTCTCAACCTCAAATCTGTC
AGAGAGAGCCTAGGGGTTGGAGATATAGAGTTTGTTTCATGCAGCCCAACTGTCTATGAG
GCCATGCTATTAGATTGGATGAGGAACCTTGAAGTTGGAATCCCTGAACTCCTTGAGAGC
GACATCAAAGTGTTGATTTATGCTGGAGAGTATGACCTCATATGTAACTGGCTTGGGAAC
TCAAGGTGGGTAAACTCTATGGAATGGTCTGGAAAGGAAGCTTTTGTGTCCTCATCCGAG
AAGCCCTTCACAGTCGACGGGAAAGAAGCTGGCGTTCTAAAGAGCCACGGTCCTTTGAGT
TTCTTGAAGGTTCACGATGCTGGTCACATGGTACCTATGGATCAACCGAAGGCTGCTCTG
GAGATGCTGAAGAGGTGGACTTCTGGAAACCTTTCGGAGCCATCTTCAAGCTCCCAGAGG
CTTGATTTTACAATGTAA

Peptide Sequence

PEP ID

Zm00001d020642_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:7:126107073:126110894:-1 gene:Zm00001d020642 transcript:Zm00001d020642_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Serine carboxypeptidase-like 49
Sequence

MSPEAGPIMRPADQLLLPFLLLAVASVAAAGGSWENGYGSILRLPSSSPRRFPRSAAVDL
IHALNLHPADASPPLSTAGVEGALAPAGTLVERPIRIASFANGGAATSVEDLGHHAGYYR
LANTHDARMFYFFFESRGHKDDPVVIWLTGGPGCSSELALFYENGPFNIADNLSLVWNDF
GWDKASNLIYVDQPTGTGFSYSSDSRDTRHNEATISNDLYDFLQAFFAEHPKYAKNDFFI
TGESYAGHYIPAFASRVHQGNKNNEGIHINLKGFAIGNGLTDPAIQYKAYPDYALDMGLI
TKTQFNRINKIVPTCEFAVKLCGTSGTVSCLAAYFVCNTIFSAIRTIIGNKNYYDIRKPC
IGSLCYDFSNLEKFLNLKSVRESLGVGDIEFVSCSPTVYEAMLLDWMRNLEVGIPELLES
DIKVLIYAGEYDLICNWLGNSRWVNSMEWSGKEAFVSSSEKPFTVDGKEAGVLKSHGPLS
FLKVHDAGHMVPMDQPKAALEMLKRWTSGNLSEPSSSSQRLDFTM

Transcript Sequence

Transcript ID

Zm00001d020642_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:7:126107073:126110894:-1 gene:Zm00001d020642 gene_biotype:protein_coding transcript_biotype:protein_coding description:Serine carboxypeptidase-like 49
Sequence

ATGTGGACCCAGCACAACAAGAAAAATCTAGTAACGCGGCGGCTGGCTCTTCTCGCGCTA
CCGCTCTCTTGAAGGAAGTCTCCGTCCCCGCTTCTGATTCACTCCCCCACATCGCCATAT
GTCGCCGGAGGCCGGACCAATCATGCGGCCCGCCGACCAGCTACTCCTCCCGTTCCTCCT
CCTGGCCGTTGCCTCCGTCGCTGCCGCCGGCGGCTCGTGGGAGAATGGATATGGGAGCAT
CCTCCGCCTCCCCTCCTCGTCTCCGCGCCGGTTCCCCCGCTCCGCGGCCGTCGACCTGAT
CCACGCGCTCAACCTCCACCCCGCCGACGCGTCCCCTCCCCTCTCCACCGCCGGCGTAGA
GGGCGCCCTCGCCCCCGCGGGGACCCTCGTCGAGAGGCCCATCCGCATCGCGTCCTTCGC
GAACGGAGGCGCCGCCACGTCGGTGGAGGACCTCGGCCACCACGCGGGGTATTACCGCCT
CGCCAACACCCACGACGCCAGGATGTTCTACTTCTTCTTCGAGTCGAGGGGCCACAAGGA
CGACCCCGTGGTGATCTGGCTCACGGGCGGGCCCGGCTGCAGCAGCGAGCTCGCGCTCTT
CTACGAGAACGGCCCCTTCAACATAGCGGACAACTTGTCGCTCGTCTGGAATGATTTTGG
TTGGGACAAGGCATCAAATCTTATCTATGTCGACCAGCCCACTGGAACTGGGTTTAGTTA
CAGCTCGGATTCGCGTGACACTCGCCACAACGAAGCTACTATTAGCAATGATCTATATGA
TTTCCTGCAGGCCTTTTTTGCTGAGCACCCAAAGTATGCTAAAAATGATTTCTTCATAAC
TGGGGAATCATATGCTGGGCATTACATTCCTGCCTTTGCAAGTCGTGTGCACCAGGGAAA
CAAGAACAATGAGGGCATTCACATTAACTTGAAGGGTTTTGCTATTGGCAACGGACTAAC
AGATCCAGCAATACAGTACAAGGCATACCCTGATTACGCATTGGATATGGGATTAATTAC
AAAAACACAATTTAACAGGATCAATAAAATAGTTCCAACTTGTGAATTCGCGGTCAAGCT
TTGTGGTACTTCTGGAACTGTATCTTGCCTTGCTGCGTACTTTGTCTGCAATACAATATT
CAGTGCCATCAGGACAATCATAGGCAATAAAAATTATTACGACATCAGGAAACCATGCAT
CGGAAGCCTATGCTATGATTTCTCTAATTTGGAGAAATTTCTCAACCTCAAATCTGTCAG
AGAGAGCCTAGGGGTTGGAGATATAGAGTTTGTTTCATGCAGCCCAACTGTCTATGAGGC
CATGCTATTAGATTGGATGAGGAACCTTGAAGTTGGAATCCCTGAACTCCTTGAGAGCGA
CATCAAAGTGTTGATTTATGCTGGAGAGTATGACCTCATATGTAACTGGCTTGGGAACTC
AAGGTGGGTAAACTCTATGGAATGGTCTGGAAAGGAAGCTTTTGTGTCCTCATCCGAGAA
GCCCTTCACAGTCGACGGGAAAGAAGCTGGCGTTCTAAAGAGCCACGGTCCTTTGAGTTT
CTTGAAGGTTCACGATGCTGGTCACATGGTACCTATGGATCAACCGAAGGCTGCTCTGGA
GATGCTGAAGAGGTGGACTTCTGGAAACCTTTCGGAGCCATCTTCAAGCTCCCAGAGGCT
TGATTTTACAATGTAACAAAACACACATGCTGCTCATGACATTTCGAGCATGTACCTCTG
GATGTTTGTAGGCTCAGAAAAGGTCCTGGTCTTAGGCTCTGAAAACCTCATCTGGCGACC
ATACGTTATTTACCTTGTATGGGCGCTCCGCTTGCTGGTGAGACACGGTGTTACGAGTTA
CGACTCGATGAACATGTAATAAAGCTTTTCAGAGAATTGCTAGGCCAGGCATAGATCTGA
AGTACCTTTTGTG