Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d020541_T012
CDS Infomation

cds chromosome:B73_RefGen_v4:7:121685463:121693077:1 gene:Zm00001d020541 gene_biotype:protein_coding transcript_biotype:protein_coding description:Queuine tRNA-ribosyltransferase
Sequence

ATGGCGCTTCGTTTCGAGATATTAGGAAGATTCAATCGCGCCCGCGCAGCTCGCTTAACT
CTTCCCCACTTTACTTGTCAAACACCACTTTTTATGCCTGTTGGAACTCAAGGTACAATA
AAAGGGTTAACCACTGACCAGTTAGAGGAGATAGGTTGCCAGATTATACTTGGAAACACC
TACCATCTTGAATTACGTCCAGGGTCTCAACTTATTGATGATTTGGGTGGCCTGCACAAA
TTTATGAATTGGAAAAGGGCATTGCTGACTGACTCTGGTGGTTTCCAAATGGTTTCGTTG
CTGCATTTGGCTGATATTACTGAGGAAGGAGTTACGTTTCAGTCACCTGTTGATGGGAAG
CCCATGCTCTTGACACCTGAGGAATCTATTCATATTCAGAACAATATTGGAGCTGATATC
ATCATGGCACTTGATGATGTTGTAAAGACCACAATTACTGGCCCGAGGATAAAAGAAGCT
ATGTATCGCACCATTCGTTGGATTGACAGGTGCATAGCTGCTCACAAGAAACCTGATGTC
CAGAATTTATTTGGGATTGTGCAAGGAGGATTGGATCCTGTTCTTAGGCGAGTTCATCTA
GCTTATTATATAGATATCTGTGTTAGGAGCTTGGTTGAGCGGAATCTTCCTGGATATGCA
ATTGGTGGTCTTGCTGGTGGCGAAGACAAGGATTCATTTTGGCGTGTTGTTGCCCAATGC
ACTGCTGGATTGCCTGAAAATAAACCACGATATGTCATGGGTGTTGGCTATCCACTTGAT
ATTGTAGTATGCAGTGCTTTAGGTGCAGATATGTATGACTGTGTTTATCCAACACGGACT
GCTCGTTTTGGGACTGCACTTGTGCCTGAGGGTGTCCTAAAGTTGAAACATAATTCAATG
GCGACTGATGAACGGCCAATTGATCATACGTGTTCATGCATGGTCTGCAAAAAATATACG
CGCGCCTACTTACATTGCCTGGTCACAAAAGATGCTATGGGTTCTCAGCTGCTGTCATAT
CATAACTTATCATTTATGATGCGGTTAAGTAGAGACCTCCACATGTCTATTCTTGAAGGA
CGATTTCCAGAATTCGTGCGAGGATTCTTGAGGGTGCAGTTTCCAACGGGAGACGTTCCG
CAGTGGGTTCGCAACGCGATGGAGGTCGCTGGCATTGACATATCCGAGTGCTGTGCTTCC
ACCAATGTCTGA

Peptide Sequence

PEP ID

Zm00001d020541_P012
PEP Infomation

pep chromosome:B73_RefGen_v4:7:121685463:121693077:1 gene:Zm00001d020541 transcript:Zm00001d020541_T012 gene_biotype:protein_coding transcript_biotype:protein_coding description:Queuine tRNA-ribosyltransferase
Sequence

MALRFEILGRFNRARAARLTLPHFTCQTPLFMPVGTQGTIKGLTTDQLEEIGCQIILGNT
YHLELRPGSQLIDDLGGLHKFMNWKRALLTDSGGFQMVSLLHLADITEEGVTFQSPVDGK
PMLLTPEESIHIQNNIGADIIMALDDVVKTTITGPRIKEAMYRTIRWIDRCIAAHKKPDV
QNLFGIVQGGLDPVLRRVHLAYYIDICVRSLVERNLPGYAIGGLAGGEDKDSFWRVVAQC
TAGLPENKPRYVMGVGYPLDIVVCSALGADMYDCVYPTRTARFGTALVPEGVLKLKHNSM
ATDERPIDHTCSCMVCKKYTRAYLHCLVTKDAMGSQLLSYHNLSFMMRLSRDLHMSILEG
RFPEFVRGFLRVQFPTGDVPQWVRNAMEVAGIDISECCASTNV

Transcript Sequence

Transcript ID

Zm00001d020541_T012
Transcript Infomation

cdna chromosome:B73_RefGen_v4:7:121685463:121693077:1 gene:Zm00001d020541 gene_biotype:protein_coding transcript_biotype:protein_coding description:Queuine tRNA-ribosyltransferase
Sequence

GACCGTCCCCGCGTCGGCGCGTCCCGCACACCGCGCTCCCGCTCGGCCGCTCCTGCCTGC
GCGCTGCAGCAGCTCGGCTGCTCGCGGTCGCTTGTCCCGTGCGCCCGGCGGCCGGCTGCT
TGCCCCGCCGACCTATTCGGCTGCTTCCTGCTTGAGTGCTTGTCCCATCCGGCGGCCCGG
CTGCTTCTGCTTGTTCGCTTAGTATCAATCCAGGCTCTGATTTGGTGGCTGAAGCTCTGT
TTCTCCATGGCGCTTCGTTTCGAGATATTAGGAAGATTCAATCGCGCCCGCGCAGCTCGC
TTAACTCTTCCCCACTTTACTTGTCAAACACCACTTTTTATGCCTGTTGGAACTCAAGGT
ACAATAAAAGGGTTAACCACTGACCAGTTAGAGGAGATAGGTTGCCAGATTATACTTGGA
AACACCTACCATCTTGAATTACGTCCAGGGTCTCAACTTATTGATGATTTGGGTGGCCTG
CACAAATTTATGAATTGGAAAAGGGCATTGCTGACTGACTCTGGTGGTTTCCAAATGGTT
TCGTTGCTGCATTTGGCTGATATTACTGAGGAAGGAGTTACGTTTCAGTCACCTGTTGAT
GGGAAGCCCATGCTCTTGACACCTGAGGAATCTATTCATATTCAGAACAATATTGGAGCT
GATATCATCATGGCACTTGATGATGTTGTAAAGACCACAATTACTGGCCCGAGGATAAAA
GAAGCTATGTATCGCACCATTCGTTGGATTGACAGGTGCATAGCTGCTCACAAGAAACCT
GATGTCCAGAATTTATTTGGGATTGTGCAAGGAGGATTGGATCCTGTTCTTAGGCGAGTT
CATCTAGCTTATTATATAGATATCTGTGTTAGGAGCTTGGTTGAGCGGAATCTTCCTGGA
TATGCAATTGGTGGTCTTGCTGGTGGCGAAGACAAGGATTCATTTTGGCGTGTTGTTGCC
CAATGCACTGCTGGATTGCCTGAAAATAAACCACGATATGTCATGGGTGTTGGCTATCCA
CTTGATATTGTAGTATGCAGTGCTTTAGGTGCAGATATGTATGACTGTGTTTATCCAACA
CGGACTGCTCGTTTTGGGACTGCACTTGTGCCTGAGGGTGTCCTAAAGTTGAAACATAAT
TCAATGGCGACTGATGAACGGCCAATTGATCATACGTGTTCATGCATGGTCTGCAAAAAA
TATACGCGCGCCTACTTACATTGCCTGGTCACAAAAGATGCTATGGGTTCTCAGCTGCTG
TCATATCATAACTTATCATTTATGATGCGGTTAAGTAGAGACCTCCACATGTCTATTCTT
GAAGGACGATTTCCAGAATTCGTGCGAGGATTCTTGAGGGTGCAGTTTCCAACGGGAGAC
GTTCCGCAGTGGGTTCGCAACGCGATGGAGGTCGCTGGCATTGACATATCCGAGTGCTGT
GCTTCCACCAATGTCTGACACCAAGCGTATAGGGGCCACCTTTAACTGTACCGGTTGACT
GCAAATGGAGTTGTGCCGAGTTAAGACTCTTCGGCAAGCAAAAGACGACGACAGGCTTTC
ACAAAGAAGTTTTTTTCCGTCATACATGTAGGGTCTCACACGGATTCAGCATAGGATTTT
CCAATAGTATGCTGAAGCTTGGCGACAGGTTTTGTTAGTGTTTTGTGTTGTGTTTGGAAA
CCGCAGAGGTATGCTATGCTATTCTTCTGGGGTCTAGGTTATGCTTCGTCTTAATCACTG
GATGTGATTTTTAGTGGTACGGTCAGATCAAAGGAAGGTGTACCCAACTCTGACGAATAT
TTTTTGTTATAACGAAAAGAATGTTATAGTCCTTGCAATGAT