Gene sequences

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SNP Detection
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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d020512_T005
CDS Infomation	cds chromosome:B73_RefGen_v4:7:119803246:119808874:-1 gene:Zm00001d020512 gene_biotype:protein_coding transcript_biotype:protein_coding description:BTB/POZ domain-containing protein NPY1
Sequence	ATGAAGTTCATGAAGCTGGGCTCCAAGCCCGACGCCTTCCAGTCCGACGGCGCCGACGTC CGATATGTGGTCTCTGACCTTGCAACAGATGTTGTGGTGCATGTTGGTGAAGTAAAATTT TACTTGCACAAGTTTCCCCTCCTTTCCAAGAGCGGCAAGCTTCAAAGATTAGTTCTGAAG GCCGCTGAGGACGAGACTGATGAGGTTCGCATAGATGACCTTCCTGGGGGAGCAAAATCA TTCGAAATATGTGCCAAGTTCTGCTATGGAATGGTGGTCACCCTCAGTCCACACAACGTT GTAGCTGCAAGATGTGCGTCACAGTATCTTGAAATGACCGAAGATATGGAAAAGGGGAAC TTGATATTTAAAATCGAGGTCTTCATAAATTCTAGCATACTTCGTAGCTGGAAGGACTCT ATCATTGTTCTCCAGAGCACAAAGGCTCTATCACCATGGTCTGAAGAGCTGAAGGTTGTG GGTAGATGTATCGATGCCATCGCTTCGAAGACGTCTGCGGATCCTGCCAATGTAACCTGG TCATACAGTCATAGTAGCAAGAAAGGAGGAGCTTGTGCTGAAATAGTCGAGCCAGCAGGA AAGCCATCAATAGCTCCAAAAGATTGGTGGGTTGAGGACTTGTGTGAACTGGATGTTGAC CTGTACAAGAGAGTCATGGTTGCTATCAAATCCAAGGGGAGAATGTCACCTGAACTGATA GGAGAGGCACTTAAAGCCTATGCAGTTAGATGGCTGCCAGACTCCTACGATGCATTAGTT GCCGAGGATTACATGAGGAGGAATCAATGTCTGGTTGAGACAATAATATGGTTGCTGCCT TCTGACAAGAGCTCGGGATGTTCTTGCAGATTTCTCCTGAAACTGTTGAAAGTGGCCATA CTAGTCGGAGGCGGGGAGCACGTGAAGGAAGAGCTTATCAGGAGGATCAGCTTCCAGTTG CACAAAGCTACTGTTAAGGATCTCTTATTACCTGCCACTTCGCCTAATGATGGTACCTAT GATGTTCGGCTGGTGCATAATCTTGTCCAGAGATTTGTTGCAAGAACAGCGCTGTCTCAT AATGGCGGTTTCATTGAGAAGTCCGACGAAAAGATGATTGAGCTCAACTTCGAGCAAGAA TCCATTTTGTCGGTAGGAGAGCTTGTTGATGGCTACCTGTCTGAAGTAGCTTCGGATCAA GACCTTTCGTTGTCTATGTTTGTTGAACTGGCGACTGCCGTGCCAGAGGTGGCTAGGCCT GTTCATGACAACCTGTACTATGCAGTCGATGCATATCTCAAGGAACACCCAGACATAAAC AAGTCCGAGAAGAAGAAGATTTGCAGTCTGGTGGATGTCAAGAAGCTCAGCGCAGATGCA TCCGTGCACGCCACACAAAACGACCGCCTGCCTCTCCGGTTGGTGGTTCAGGTCCTCTTC TTCCAGCAGCTGAGGGCCGGCCCAAGCAAAGAACTCGCCCTGATTGACAATGGAGAACAC GCTTGCACACGGCCTACGCAGGATCAATGTGACCGTGGTGAAAGGCGGATACCGAAGCAT CCAAACTCACTGAATAAGCAGGTGACAAGCCTGAGCGCGAGAGAGAGCCAGCAGCACCGG ATCAGCGAGCACAGGGGCGGCAGGAACAGCTTTAAAGACCAGCTTGGGGGCCTCCTGCTG CAGTCGCGATCCAGGAGGATCTTTGACAAGCTGTGGAGCAGCAAAGGGCAGGGCGAGCAT GGCGGGAAAGGCTCGGAGACGTCTGGTAGCTCGCAGAGCCCACCGTTGTCAGCAAAGCCT GCAGAAGTGAAGCCCTCCCCTCTTCCCCCTCTTAGGGGCAGGAGGTACTCTGTTTCTTAG

Peptide Sequence

PEP ID	Zm00001d020512_P005
PEP Infomation	pep chromosome:B73_RefGen_v4:7:119803246:119808874:-1 gene:Zm00001d020512 transcript:Zm00001d020512_T005 gene_biotype:protein_coding transcript_biotype:protein_coding description:BTB/POZ domain-containing protein NPY1
Sequence	MKFMKLGSKPDAFQSDGADVRYVVSDLATDVVVHVGEVKFYLHKFPLLSKSGKLQRLVLK AAEDETDEVRIDDLPGGAKSFEICAKFCYGMVVTLSPHNVVAARCASQYLEMTEDMEKGN LIFKIEVFINSSILRSWKDSIIVLQSTKALSPWSEELKVVGRCIDAIASKTSADPANVTW SYSHSSKKGGACAEIVEPAGKPSIAPKDWWVEDLCELDVDLYKRVMVAIKSKGRMSPELI GEALKAYAVRWLPDSYDALVAEDYMRRNQCLVETIIWLLPSDKSSGCSCRFLLKLLKVAI LVGGGEHVKEELIRRISFQLHKATVKDLLLPATSPNDGTYDVRLVHNLVQRFVARTALSH NGGFIEKSDEKMIELNFEQESILSVGELVDGYLSEVASDQDLSLSMFVELATAVPEVARP VHDNLYYAVDAYLKEHPDINKSEKKKICSLVDVKKLSADASVHATQNDRLPLRLVVQVLF FQQLRAGPSKELALIDNGEHACTRPTQDQCDRGERRIPKHPNSLNKQVTSLSARESQQHR ISEHRGGRNSFKDQLGGLLLQSRSRRIFDKLWSSKGQGEHGGKGSETSGSSQSPPLSAKP AEVKPSPLPPLRGRRYSVS

Transcript Sequence

Transcript ID	Zm00001d020512_T005
Transcript Infomation	cdna chromosome:B73_RefGen_v4:7:119803246:119808874:-1 gene:Zm00001d020512 gene_biotype:protein_coding transcript_biotype:protein_coding description:BTB/POZ domain-containing protein NPY1
Sequence	CTAATAACTGTGGTCTGTGGAGTAAGCACCGCGATACACAGTAGTCCCACTCCCACCACT ACCACGGCGGAATGGGGTTCGGCTGTCCGCAGAGCAGAACAGAGCGTTGAAGTGAAGAAA AAGAGGCGCGCAGCACAGGGCGAAAAAGAGAGAGACGATGCCGTATTGACATTGCAACAA GCAACGAGAAGGGCGGCTTTGTCAGGCGCGGAGGCCAGAGAGCAGCAGACAGAGAGAAAG AGAGAGAGAGAGAGAGAAGAGCAGAGACGGAGCGGAGCGACCGAGAGAGAGAGAGAGGGG AAGTTTAATAATATATCCCATCACTCACACGCCACGGCATCATTCGCCGCCTCCTTCCTC CTCCCGCTCGTCGCCGTTCCTCCTCCGAGCACCAGCAGCGCGCCCCCTCCGCTCTCCCTT AGCTCACCAGCCGCCTCTTCGTCGGAGCAGCAACAGCAGCTGTGCATGGGAGTGGGAGCA CGGCTCTGAGAGGAAAAAGGGAAGAAGAAAGGTGACCAAAGGGAGGATGAAGTTCATGAA GCTGGGCTCCAAGCCCGACGCCTTCCAGTCCGACGGCGCCGACGTCCGATATGTGGTCTC TGACCTTGCAACAGATGTTGTGGTGCATGTTGGTGAAGTAAAATTTTACTTGCACAAGTT TCCCCTCCTTTCCAAGAGCGGCAAGCTTCAAAGATTAGTTCTGAAGGCCGCTGAGGACGA GACTGATGAGGTTCGCATAGATGACCTTCCTGGGGGAGCAAAATCATTCGAAATATGTGC CAAGTTCTGCTATGGAATGGTGGTCACCCTCAGTCCACACAACGTTGTAGCTGCAAGATG TGCGTCACAGTATCTTGAAATGACCGAAGATATGGAAAAGGGGAACTTGATATTTAAAAT CGAGGTCTTCATAAATTCTAGCATACTTCGTAGCTGGAAGGACTCTATCATTGTTCTCCA GAGCACAAAGGCTCTATCACCATGGTCTGAAGAGCTGAAGGTTGTGGGTAGATGTATCGA TGCCATCGCTTCGAAGACGTCTGCGGATCCTGCCAATGTAACCTGGTCATACAGTCATAG TAGCAAGAAAGGAGGAGCTTGTGCTGAAATAGTCGAGCCAGCAGGAAAGCCATCAATAGC TCCAAAAGATTGGTGGGTTGAGGACTTGTGTGAACTGGATGTTGACCTGTACAAGAGAGT CATGGTTGCTATCAAATCCAAGGGGAGAATGTCACCTGAACTGATAGGAGAGGCACTTAA AGCCTATGCAGTTAGATGGCTGCCAGACTCCTACGATGCATTAGTTGCCGAGGATTACAT GAGGAGGAATCAATGTCTGGTTGAGACAATAATATGGTTGCTGCCTTCTGACAAGAGCTC GGGATGTTCTTGCAGATTTCTCCTGAAACTGTTGAAAGTGGCCATACTAGTCGGAGGCGG GGAGCACGTGAAGGAAGAGCTTATCAGGAGGATCAGCTTCCAGTTGCACAAAGCTACTGT TAAGGATCTCTTATTACCTGCCACTTCGCCTAATGATGGTACCTATGATGTTCGGCTGGT GCATAATCTTGTCCAGAGATTTGTTGCAAGAACAGCGCTGTCTCATAATGGCGGTTTCAT TGAGAAGTCCGACGAAAAGATGATTGAGCTCAACTTCGAGCAAGAATCCATTTTGTCGGT AGGAGAGCTTGTTGATGGCTACCTGTCTGAAGTAGCTTCGGATCAAGACCTTTCGTTGTC TATGTTTGTTGAACTGGCGACTGCCGTGCCAGAGGTGGCTAGGCCTGTTCATGACAACCT GTACTATGCAGTCGATGCATATCTCAAGGAACACCCAGACATAAACAAGTCCGAGAAGAA GAAGATTTGCAGTCTGGTGGATGTCAAGAAGCTCAGCGCAGATGCATCCGTGCACGCCAC ACAAAACGACCGCCTGCCTCTCCGGTTGGTGGTTCAGGTCCTCTTCTTCCAGCAGCTGAG GGCCGGCCCAAGCAAAGAACTCGCCCTGATTGACAATGGAGAACACGCTTGCACACGGCC TACGCAGGATCAATGTGACCGTGGTGAAAGGCGGATACCGAAGCATCCAAACTCACTGAA TAAGCAGGTGACAAGCCTGAGCGCGAGAGAGAGCCAGCAGCACCGGATCAGCGAGCACAG GGGCGGCAGGAACAGCTTTAAAGACCAGCTTGGGGGCCTCCTGCTGCAGTCGCGATCCAG GAGGATCTTTGACAAGCTGTGGAGCAGCAAAGGGCAGGGCGAGCATGGCGGGAAAGGCTC GGAGACGTCTGGTAGCTCGCAGAGCCCACCGTTGTCAGCAAAGCCTGCAGAAGTGAAGCC CTCCCCTCTTCCCCCTCTTAGGGGCAGGAGGTACTCTGTTTCTTAGTTTTTTTTGGGGGT GGGGGCTCTCCTAGTTTAGGGCTCTGGGATAGGTTGTTGTACAGAAGGTATCATCTGCTG CCAATCCCTTTTTGTTTTGTACGCAGATCAATCTGCTGTTCTATGTGAT