Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d020448_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:7:114984579:114986921:-1 gene:Zm00001d020448 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein chloroplastic
Sequence	ATGCGGCACCGCCCCGCCGCGGGCTGCATCGTGCACCTTCCCGCGGCTCTCGCAGGCTTC GTCCGTGCGCGCGCCGCTGGGACTGCATCCGCGTCGTGTCGGTTCTCTTACGGCAAAGCG CTGGCCGCCTGTGCCACCGCCTCCGCGCCGTTCGCCTTCGCGGAGCAGCTCTACTGCGCA GCCTGGAAGGATGGACTCTCGCGGGACGCGTACATCTGCAGCACCATGGTGGACCTGCTC GCCAAGCACGGCCGCCTGGGCGACGCGCTGCGGGCGTTTGAGGACGGGGAATATCGCGGA AGCGTGGTCTGCTGGAATACGGCTATCTCCGGGGCGGTGCGCAACGGTGAACACGCTCTC GGAGTCGAGATGTTCCTCGACATGGTGAGGGGTTCTACCTGCGAGCCCAATTCGTTCACG TATTCTGGGGTGCTCAGCGCGTGCGCGGCTGGTGAAGAGTTGGGGGTTGGAAGGGCGGTG CATGGGATGGTGCTCCGGCGTGATTCCGAATACGATGTCTTCGTTGGAACATCCATCGTT AACATGTATGTGAAATGTGGTCAGATGGGCGCTGCCATGAATGAGTTCTGGAGGATGCCA ATCCGGAATGTGGTTTCTTGGACAACTGCGATTGCTGGTTTTGTGCAACAGGAGGACCCA GTAAATGCAATGCTGCTGCTTACAGAAATGTTGCGGAGTGGTGTGGCAATTAACAAGTAC ACGGCTACGAGCATATTGCTCGCCTGCTCTCAAACGTCCATGATACGGGAGGCTAATCAG GTGCACGGCATGATTATAAAGAGCGAGCTGTACTTGGATCATGTTGTCAAGGAGGCTTTG ATTTCCACATATGCAAATGCTGGGGCTGTTCAGCTCTGTGAGAAGGTGTTTCAAGAAGTA GATACAGTTAGCAATAGAAGCATCTGGTCGGCTTTCATATCTGGGGTTAGTAGGCATAGC GTACAAAGATCAATTCAGCTGTTAAGGAGGATGTTATTTCAGTGCCTAAGACCGAATGAC AAATGCTATGCTTCTGTTTTCAGTTCTGTTGACTCATCTGAGCTTGGCAGACAGCTGCAT CCATTGGTCATAAAAGATGGGTTTATTCATGTTGTTCTTGTGGCAAGTGCACTCTCCACC ATGTACTCCAGATGTAATGATTTGAAGGATAGCTACAAGGTTTTTGAAGAGATGCAGGAA CAGGATGAAGTGTCATGGACATCAATGATTGCTGGTTTTGCAACACATGGCCATTCAGTT GAGGCATTCCAGGTGTTAAGGAATATGATTGCTGAAGGTTTTACACCAAATGATGTGTCG TTAAGCGCCATTCTTTCAGCCTGCAATATACCGGAGTGTTTGCTTAAAGGGAAGGAAGTT CATGGACATGTCCTTCGTGCCTACGGAAGAACCACATCCATTAACCATTGCCTTGTTTCC ATGTATTCCAAATGTAAAGATTTACAAACAGCTCGAAAACTTTTTGATGCAACTCCATGC AAAGACCAGATCATGTTATCTTCAATGATATCTGGATATGCTACAAATGGTTATAGTGAG GAGGCACTCTCATTGTTTCAGCTTATGTTGGCAGCTGGTTTTCATATAGATAGGTTTTTA TGCTCATCAATTATTAGCATATGTGCTAACATGGCAAGACCATTCTGTGGTAAATTGTTA CATGGGTATGCATCCAAAGTAGGCATACTGTCTGATCTATCTGTGAGCAGTTCACTTGTG AAGTTATATTCCAAAAGTGGCAACCTGGATGATTCTCGTAAAGTTTTTGATGAACTAGAT GTTCCGGATTTAGTTACATGGACAGCGATAATTGATGGATATGCTCAACATGGAAGCAGT CAGGATGCTTTGGCGTTGTTCGATTTGATGATTAGATGTGGGGTAAAACCAGACACTGTC ATACTTGTGAGTGTTTTGTCTGCTTGTGGCCGAAATGGTTTAGTTGAAGAAGGCTTCAAA CATTTTAATTCAATGAGAACCGTGTATGGGGTTGAGCCAGTGTTGCACCACTACTGCTGT ATGGTTGATTTACTTGGTAGATCTGGGAGGCTTGTAGAGGCAAAAAGTTTTATTGAGAGT ATGCCTGTGAAACCTAATTCAATGGTGTGGAGCACACTGCTTGCTGCTTGCAGAGTTCAT GATGATGTTGTACTTGGACGTTTTGTAGAAAATAAGATCCATGAAGAAAATTGTGATTCG GGGTGTTTTGCTACTATGTCAAACATTCGAGCAAATTCTGGAGACTGGGAAGGTGTAATG GAAATAAGAAAATCAGTCAAGGATGTGGAGAAAGAACCTGGATGGAGTTTTCTGGAAGAA TAA

Peptide Sequence

PEP ID	Zm00001d020448_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:7:114984579:114986921:-1 gene:Zm00001d020448 transcript:Zm00001d020448_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein chloroplastic
Sequence	MRHRPAAGCIVHLPAALAGFVRARAAGTASASCRFSYGKALAACATASAPFAFAEQLYCA AWKDGLSRDAYICSTMVDLLAKHGRLGDALRAFEDGEYRGSVVCWNTAISGAVRNGEHAL GVEMFLDMVRGSTCEPNSFTYSGVLSACAAGEELGVGRAVHGMVLRRDSEYDVFVGTSIV NMYVKCGQMGAAMNEFWRMPIRNVVSWTTAIAGFVQQEDPVNAMLLLTEMLRSGVAINKY TATSILLACSQTSMIREANQVHGMIIKSELYLDHVVKEALISTYANAGAVQLCEKVFQEV DTVSNRSIWSAFISGVSRHSVQRSIQLLRRMLFQCLRPNDKCYASVFSSVDSSELGRQLH PLVIKDGFIHVVLVASALSTMYSRCNDLKDSYKVFEEMQEQDEVSWTSMIAGFATHGHSV EAFQVLRNMIAEGFTPNDVSLSAILSACNIPECLLKGKEVHGHVLRAYGRTTSINHCLVS MYSKCKDLQTARKLFDATPCKDQIMLSSMISGYATNGYSEEALSLFQLMLAAGFHIDRFL CSSIISICANMARPFCGKLLHGYASKVGILSDLSVSSSLVKLYSKSGNLDDSRKVFDELD VPDLVTWTAIIDGYAQHGSSQDALALFDLMIRCGVKPDTVILVSVLSACGRNGLVEEGFK HFNSMRTVYGVEPVLHHYCCMVDLLGRSGRLVEAKSFIESMPVKPNSMVWSTLLAACRVH DDVVLGRFVENKIHEENCDSGCFATMSNIRANSGDWEGVMEIRKSVKDVEKEPGWSFLEE

Transcript Sequence

Transcript ID	Zm00001d020448_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:7:114984579:114986921:-1 gene:Zm00001d020448 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein chloroplastic
Sequence	ATGCGGCACCGCCCCGCCGCGGGCTGCATCGTGCACCTTCCCGCGGCTCTCGCAGGCTTC GTCCGTGCGCGCGCCGCTGGGACTGCATCCGCGTCGTGTCGGTTCTCTTACGGCAAAGCG CTGGCCGCCTGTGCCACCGCCTCCGCGCCGTTCGCCTTCGCGGAGCAGCTCTACTGCGCA GCCTGGAAGGATGGACTCTCGCGGGACGCGTACATCTGCAGCACCATGGTGGACCTGCTC GCCAAGCACGGCCGCCTGGGCGACGCGCTGCGGGCGTTTGAGGACGGGGAATATCGCGGA AGCGTGGTCTGCTGGAATACGGCTATCTCCGGGGCGGTGCGCAACGGTGAACACGCTCTC GGAGTCGAGATGTTCCTCGACATGGTGAGGGGTTCTACCTGCGAGCCCAATTCGTTCACG TATTCTGGGGTGCTCAGCGCGTGCGCGGCTGGTGAAGAGTTGGGGGTTGGAAGGGCGGTG CATGGGATGGTGCTCCGGCGTGATTCCGAATACGATGTCTTCGTTGGAACATCCATCGTT AACATGTATGTGAAATGTGGTCAGATGGGCGCTGCCATGAATGAGTTCTGGAGGATGCCA ATCCGGAATGTGGTTTCTTGGACAACTGCGATTGCTGGTTTTGTGCAACAGGAGGACCCA GTAAATGCAATGCTGCTGCTTACAGAAATGTTGCGGAGTGGTGTGGCAATTAACAAGTAC ACGGCTACGAGCATATTGCTCGCCTGCTCTCAAACGTCCATGATACGGGAGGCTAATCAG GTGCACGGCATGATTATAAAGAGCGAGCTGTACTTGGATCATGTTGTCAAGGAGGCTTTG ATTTCCACATATGCAAATGCTGGGGCTGTTCAGCTCTGTGAGAAGGTGTTTCAAGAAGTA GATACAGTTAGCAATAGAAGCATCTGGTCGGCTTTCATATCTGGGGTTAGTAGGCATAGC GTACAAAGATCAATTCAGCTGTTAAGGAGGATGTTATTTCAGTGCCTAAGACCGAATGAC AAATGCTATGCTTCTGTTTTCAGTTCTGTTGACTCATCTGAGCTTGGCAGACAGCTGCAT CCATTGGTCATAAAAGATGGGTTTATTCATGTTGTTCTTGTGGCAAGTGCACTCTCCACC ATGTACTCCAGATGTAATGATTTGAAGGATAGCTACAAGGTTTTTGAAGAGATGCAGGAA CAGGATGAAGTGTCATGGACATCAATGATTGCTGGTTTTGCAACACATGGCCATTCAGTT GAGGCATTCCAGGTGTTAAGGAATATGATTGCTGAAGGTTTTACACCAAATGATGTGTCG TTAAGCGCCATTCTTTCAGCCTGCAATATACCGGAGTGTTTGCTTAAAGGGAAGGAAGTT CATGGACATGTCCTTCGTGCCTACGGAAGAACCACATCCATTAACCATTGCCTTGTTTCC ATGTATTCCAAATGTAAAGATTTACAAACAGCTCGAAAACTTTTTGATGCAACTCCATGC AAAGACCAGATCATGTTATCTTCAATGATATCTGGATATGCTACAAATGGTTATAGTGAG GAGGCACTCTCATTGTTTCAGCTTATGTTGGCAGCTGGTTTTCATATAGATAGGTTTTTA TGCTCATCAATTATTAGCATATGTGCTAACATGGCAAGACCATTCTGTGGTAAATTGTTA CATGGGTATGCATCCAAAGTAGGCATACTGTCTGATCTATCTGTGAGCAGTTCACTTGTG AAGTTATATTCCAAAAGTGGCAACCTGGATGATTCTCGTAAAGTTTTTGATGAACTAGAT GTTCCGGATTTAGTTACATGGACAGCGATAATTGATGGATATGCTCAACATGGAAGCAGT CAGGATGCTTTGGCGTTGTTCGATTTGATGATTAGATGTGGGGTAAAACCAGACACTGTC ATACTTGTGAGTGTTTTGTCTGCTTGTGGCCGAAATGGTTTAGTTGAAGAAGGCTTCAAA CATTTTAATTCAATGAGAACCGTGTATGGGGTTGAGCCAGTGTTGCACCACTACTGCTGT ATGGTTGATTTACTTGGTAGATCTGGGAGGCTTGTAGAGGCAAAAAGTTTTATTGAGAGT ATGCCTGTGAAACCTAATTCAATGGTGTGGAGCACACTGCTTGCTGCTTGCAGAGTTCAT GATGATGTTGTACTTGGACGTTTTGTAGAAAATAAGATCCATGAAGAAAATTGTGATTCG GGGTGTTTTGCTACTATGTCAAACATTCGAGCAAATTCTGGAGACTGGGAAGGTGTAATG GAAATAAGAAAATCAGTCAAGGATGTGGAGAAAGAACCTGGATGGAGTTTTCTGGAAGAA TAA