Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d020363_T004
CDS Infomation

cds chromosome:B73_RefGen_v4:7:109387746:109392812:-1 gene:Zm00001d020363 gene_biotype:protein_coding transcript_biotype:protein_coding description:AUGMIN subunit 5
Sequence

ATGCTCGAAGCATATGAACAGCAATGCGACGAAGCATGCAAAATATTTGCTGAATACCAG
CGTCGGCTACATCAGTTTGTCAACCAAGCAAGGGACGTGCAAAGATCAAGTATAGGTGTG
GCTGGAACTACAGGTTCTGTTGAAGATATGCAATTGCAGAGCAATAGAGACGACCTTTAC
TCATCAACTATTAAAAGCAATAGGTTGTCAGAGGATCTTTTAGAAACTGCAGGTGAAAGG
AGCATCCGGAAGGCATGTGAAACTCTTGCTGCAGATATGATTGAAACGATTCGAAGTTCA
TTCCCGGCATTTGAAGGGAGTGGCATTAATTCAAGTTGCCAATTAACTGCAGCAAAGCTG
GGTATTGACTTGGATGGTGAAATACCCACAGATGTTAAAGCTGTTGCATTGGATTCCCTA
AAGAATCCGTTCCTGCTTCTGCAGTCAATCATTACCTACACATCGCGCATGAAAACACTT
ATACATAGAGAAACAGACAAGATTGACATACGTGCTGATGCAGAATTACTGAGGTATAAA
TATGAAAATGAGCAGGTTATTGATGCTGCTTCAACTGATGCAAGCTCACCCTTACCGTAT
CAGGTGTATGGCAATGGGAAGATTGGATCTCAGTTGCCAACTCGAGGAACATATGATCAG
CTATTAGAAAGACAGAAAGAACATGTACAGCAATTCTTGGCAACAGAAGATGCTTTGAAC
AAAGCTGCAGAAGCTAAAGCACTAAGTCAGAAGCTTTTGCAACGCCTGTATGGAACCATT
GATATGGCAGGAAGTAAAAAGTTGCCTACTGGGAACACCACACAAAATGTGACCAACAGT
AGGCATTTAGAGCTGGATGTTTGGGCCAAGGAAAGAGAAGTTGCAGGACTAAAGGCAAGC
TTGAGTACACTTACATCTGAGGTACAACGTTTGTATAAGTTATGTGCTGAGTGGAAGGAA
GCAGAAGATTCACTGAAGAAGAAATGGAAGAAAATCGAAGAATTTGACGCCCGTCGAACA
GAGCTGGAGTGCATTTACAGTGCTCTTCAGCGGGCTAATATGGATGCATCATCATTTTGG
GAGCAACAACCATTATCAGCTAGAGGATATGCATCAAGTACAATTATCCCTGCGTGCCAT
ACTGTGGTAGACATGTCTACGAACTCAAGGGACCTCATAGAGCGAGAATTAGCTGCATTT
AGCCAGAGCTTGGATAATAGCTTGTGCAGGTTGCCAGCAACCCCGCAGGCCCTTTTGGAG
GCCGTGGGTTCTAACGGCATGACAGGATCAGAAGCACTTGCAGCTGCAGAGAAACATGCA
GCTCTGTTAACTGCAAGAGCTGGTGCTAGAGATCCATCTGCTGTGCCATCTATATGCCGC
ATCTCTGCTGCTCTTCAGTATAATTTTGGTACAGAAGGCACAGATTTTGGCTTGGCTTCA
GTATTAAATTCACTGGAGTTCTGTCTAAAGCCTTGTGGGTCTGAAGCTAGCATATTAGAG
GATTTATCAAAATCTATCAACTTCGTGCACACACGGAGAAATCTTGTTGAAAATGACCGT
GTTTTGCTGAACCGTGCACATCGTGCTCAACAAGAATATGAAAGAGTGGCCAACTATTGT
CTTAAATTAGCTGGCGAACAAGAAAAGCTGGTGAGTGAAAGATGGCTTCCGGAGCTGAGA
AATGCAGTTCAAGAAGCTCGGAGGTGTTTTGATGACTGCCAGCGTGTTAGGGGCTTGGTT
GATGAGTGGTACGAGCAGCCAGCAGCCACAATTGTCGATTGGGTAACGATAGATGGACAG
AGCGTGGGTGCCTGGATCAACCTCGTGAAGCAACTCCACATGGAGATCTCCAGACGGACG
CTGGCAATGTCATCTGTAGGAGACGACTGA

Peptide Sequence

PEP ID

Zm00001d020363_P004
PEP Infomation

pep chromosome:B73_RefGen_v4:7:109387746:109392812:-1 gene:Zm00001d020363 transcript:Zm00001d020363_T004 gene_biotype:protein_coding transcript_biotype:protein_coding description:AUGMIN subunit 5
Sequence

MLEAYEQQCDEACKIFAEYQRRLHQFVNQARDVQRSSIGVAGTTGSVEDMQLQSNRDDLY
SSTIKSNRLSEDLLETAGERSIRKACETLAADMIETIRSSFPAFEGSGINSSCQLTAAKL
GIDLDGEIPTDVKAVALDSLKNPFLLLQSIITYTSRMKTLIHRETDKIDIRADAELLRYK
YENEQVIDAASTDASSPLPYQVYGNGKIGSQLPTRGTYDQLLERQKEHVQQFLATEDALN
KAAEAKALSQKLLQRLYGTIDMAGSKKLPTGNTTQNVTNSRHLELDVWAKEREVAGLKAS
LSTLTSEVQRLYKLCAEWKEAEDSLKKKWKKIEEFDARRTELECIYSALQRANMDASSFW
EQQPLSARGYASSTIIPACHTVVDMSTNSRDLIERELAAFSQSLDNSLCRLPATPQALLE
AVGSNGMTGSEALAAAEKHAALLTARAGARDPSAVPSICRISAALQYNFGTEGTDFGLAS
VLNSLEFCLKPCGSEASILEDLSKSINFVHTRRNLVENDRVLLNRAHRAQQEYERVANYC
LKLAGEQEKLVSERWLPELRNAVQEARRCFDDCQRVRGLVDEWYEQPAATIVDWVTIDGQ
SVGAWINLVKQLHMEISRRTLAMSSVGDD

Transcript Sequence

Transcript ID

Zm00001d020363_T004
Transcript Infomation

cdna chromosome:B73_RefGen_v4:7:109387746:109392812:-1 gene:Zm00001d020363 gene_biotype:protein_coding transcript_biotype:protein_coding description:AUGMIN subunit 5
Sequence

AGGCACAAGCAAGTTATGCTCGAAGCATATGAACAGCAATGCGACGAAGCATGCAAAATA
TTTGCTGAATACCAGCGTCGGCTACATCAGTTTGTCAACCAAGCAAGGGACGTGCAAAGA
TCAAGTATAGGTGTGGCTGGAACTACAGGTTCTGTTGAAGATATGCAATTGCAGAGCAAT
AGAGACGACCTTTACTCATCAACTATTAAAAGCAATAGGTTGTCAGAGGATCTTTTAGAA
ACTGCAGGTGAAAGGAGCATCCGGAAGGCATGTGAAACTCTTGCTGCAGATATGATTGAA
ACGATTCGAAGTTCATTCCCGGCATTTGAAGGGAGTGGCATTAATTCAAGTTGCCAATTA
ACTGCAGCAAAGCTGGGTATTGACTTGGATGGTGAAATACCCACAGATGTTAAAGCTGTT
GCATTGGATTCCCTAAAGAATCCGTTCCTGCTTCTGCAGTCAATCATTACCTACACATCG
CGCATGAAAACACTTATACATAGAGAAACAGACAAGATTGACATACGTGCTGATGCAGAA
TTACTGAGGTATAAATATGAAAATGAGCAGGTTATTGATGCTGCTTCAACTGATGCAAGC
TCACCCTTACCGTATCAGGTGTATGGCAATGGGAAGATTGGATCTCAGTTGCCAACTCGA
GGAACATATGATCAGCTATTAGAAAGACAGAAAGAACATGTACAGCAATTCTTGGCAACA
GAAGATGCTTTGAACAAAGCTGCAGAAGCTAAAGCACTAAGTCAGAAGCTTTTGCAACGC
CTGTATGGAACCATTGATATGGCAGGAAGTAAAAAGTTGCCTACTGGGAACACCACACAA
AATGTGACCAACAGTAGGCATTTAGAGCTGGATGTTTGGGCCAAGGAAAGAGAAGTTGCA
GGACTAAAGGCAAGCTTGAGTACACTTACATCTGAGGTACAACGTTTGTATAAGTTATGT
GCTGAGTGGAAGGAAGCAGAAGATTCACTGAAGAAGAAATGGAAGAAAATCGAAGAATTT
GACGCCCGTCGAACAGAGCTGGAGTGCATTTACAGTGCTCTTCAGCGGGCTAATATGGAT
GCATCATCATTTTGGGAGCAACAACCATTATCAGCTAGAGGATATGCATCAAGTACAATT
ATCCCTGCGTGCCATACTGTGGTAGACATGTCTACGAACTCAAGGGACCTCATAGAGCGA
GAATTAGCTGCATTTAGCCAGAGCTTGGATAATAGCTTGTGCAGGTTGCCAGCAACCCCG
CAGGCCCTTTTGGAGGCCGTGGGTTCTAACGGCATGACAGGATCAGAAGCACTTGCAGCT
GCAGAGAAACATGCAGCTCTGTTAACTGCAAGAGCTGGTGCTAGAGATCCATCTGCTGTG
CCATCTATATGCCGCATCTCTGCTGCTCTTCAGTATAATTTTGGTACAGAAGGCACAGAT
TTTGGCTTGGCTTCAGTATTAAATTCACTGGAGTTCTGTCTAAAGCCTTGTGGGTCTGAA
GCTAGCATATTAGAGGATTTATCAAAATCTATCAACTTCGTGCACACACGGAGAAATCTT
GTTGAAAATGACCGTGTTTTGCTGAACCGTGCACATCGTGCTCAACAAGAATATGAAAGA
GTGGCCAACTATTGTCTTAAATTAGCTGGCGAACAAGAAAAGCTGGTGAGTGAAAGATGG
CTTCCGGAGCTGAGAAATGCAGTTCAAGAAGCTCGGAGGTGTTTTGATGACTGCCAGCGT
GTTAGGGGCTTGGTTGATGAGTGGTACGAGCAGCCAGCAGCCACAATTGTCGATTGGGTA
ACGATAGATGGACAGAGCGTGGGTGCCTGGATCAACCTCGTGAAGCAACTCCACATGGAG
ATCTCCAGACGGACGCTGGCAATGTCATCTGTAGGAGACGACTGAAGCAACCAGCTGTGA
CCCAGCTGTGGCTTTGGATGTTCGGAGGCTCCGTGTGATGGGTTCGGTTTGGCACCAAGA
TATCTTCTATCTACTCGATAGCCTTTTCCCATTGTAGTTTATACGCCTCTCTCTGGTTTG
GTTTGTAATTAGTTTTTTTGTATGGTGTCAATTGCCATGTGTTGAATTTGTCATTTGTCA
CAAATTATCGGTGTTGGTGTTGTGGCTTTGCTGATTGGGCTG