Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d020280_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:7:103977437:103982053:-1 gene:Zm00001d020280 gene_biotype:protein_coding transcript_biotype:protein_coding description:Major facilitator superfamily protein
Sequence

ATGGGTCCGCCGCCGGAGAAGCGGCGGACGCTGGTGCTGGTGAACCTGGCGTCCATCATG
GAGCGCGCCGACGAGGCGCTGCTGCCGGCGGTGTACCGGGAGGTGGGCGCCGCGCTGCAC
GCCACGCCCACGGGGCTCGGCGCCCTCACGCTGTACCGCTCCATCGTGCAGGCCGCCTGC
TACCCGGTGGCGGCCTACGCCGCGTCGCGCCACAACCGCGCCCACGTCATCGCGCTGGGG
GCCTTCCTCTGGGCCGCCGCCACCTTCCTCGTCGCCGTCTCCGACACCTTCCTCCAGGTT
GCAATTTCAAGGGGCTTGAACGGCATTGGTCTAGCTCTCGTCATACCAGCAGTCCAGTCG
CTGGTAGCCGACTCCACTGACGACGACAACCGCGGCACAGCATTCGGATGGCTGCAACTG
ACCAGCAGCATCGGCTCCGTATTCGGGGGATTCTTTGCCTTACTGCTGGCCCAGACTACA
GTCTTGGGGATCGAAGGATGGCGTATTGCCTTCCACCTCGTCGCGATCGTCAGCGTCATC
GTCGGCACCCTCGTGTGGTTCTTCGCCGTGGATCCCCATTTCCCCACAAACGATGCCGCA
CCACCATCCAGCAAAAAGTCCGCGCTTGATGAAGCAAGGGAACTGATCATGGAGGCCAGG
TCCATAGTCCAGATCCCGACGTTCCAGGTCTTCGTTGCCCAGGGCGTCAGCGGCTCGTTC
CCGTGGTCAGCGCTGTCGTTCTTGTCCATGTGGCTGGAGCTCGTCGGGTTCAGCCACGAG
GACACCGCCGTCCTCACGACCACCTTCGCTGTCGCCACCTCCGTCGGCGGCCTTCTTGGC
GGGAAGATGGGGGATTCGCTCGCTCGGCGGTATCCGAACGCTGGGAGGATCGTGCTGTCT
CAGATAAGCGCCGGCTCTGCTGTTCCTTTGGCCGCTGTTCTTCTGCTGGGCTTGCCTGAT
AATCCGTCCACGTCCAGTGGTGTTGCCCATGGACTTGTTCTGTTCGTCATGGGACTCATC
ATCTCTTGGAACGGAGCTGCTACAAACTGCCCGATTTTTGCGGAGATCGTGCCCGAGAAG
CAAAGGACGAGCATCTACGCTCTGGACAGAACCTTCGAGTCCATTCTGGCGTCGTTTGCG
CCTCCGGTCGTTGGCCTGTTGTCGCAGCAAGTCTACGGCTTCAAACAGGACGACGGCAGA
GGGAGCAGCCCTGGGCAAGACCGGGAGAACGCGGCGTCGCTGGCCAAGGCGCTGTACACG
GCCATCTCCATACCGATGGTCATCTGCACCTCCATATACACGTTCATGTACCGCACCTAC
CCTCGAGACAGGGAGCGTGCGCGCATGCAGTCGGTGATTCAGTCAGAGTTGGACCAGATT
GAGCTGCTGGGCGGTCCGAGTTTAGGAGGCGGCGGCGACGGCGACGGTGATAAACCTGAC
GAGGTTGATGGCAGTTATGGTTCTGAAAGATCTGCTGAGGCCGATGCCGGCACTGAAAAA
CTACTAGGAAGGAAACCATGA

Peptide Sequence

PEP ID

Zm00001d020280_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:7:103977437:103982053:-1 gene:Zm00001d020280 transcript:Zm00001d020280_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Major facilitator superfamily protein
Sequence

MGPPPEKRRTLVLVNLASIMERADEALLPAVYREVGAALHATPTGLGALTLYRSIVQAAC
YPVAAYAASRHNRAHVIALGAFLWAAATFLVAVSDTFLQVAISRGLNGIGLALVIPAVQS
LVADSTDDDNRGTAFGWLQLTSSIGSVFGGFFALLLAQTTVLGIEGWRIAFHLVAIVSVI
VGTLVWFFAVDPHFPTNDAAPPSSKKSALDEARELIMEARSIVQIPTFQVFVAQGVSGSF
PWSALSFLSMWLELVGFSHEDTAVLTTTFAVATSVGGLLGGKMGDSLARRYPNAGRIVLS
QISAGSAVPLAAVLLLGLPDNPSTSSGVAHGLVLFVMGLIISWNGAATNCPIFAEIVPEK
QRTSIYALDRTFESILASFAPPVVGLLSQQVYGFKQDDGRGSSPGQDRENAASLAKALYT
AISIPMVICTSIYTFMYRTYPRDRERARMQSVIQSELDQIELLGGPSLGGGGDGDGDKPD
EVDGSYGSERSAEADAGTEKLLGRKP

Transcript Sequence

Transcript ID

Zm00001d020280_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:7:103977437:103982053:-1 gene:Zm00001d020280 gene_biotype:protein_coding transcript_biotype:protein_coding description:Major facilitator superfamily protein
Sequence

GGCTTGGCTACTTGCTTGCTTGCTGAGTTGCTGACTAATGGCGGCCATTCCGAGCGGAGC
GATAGCCCAAGCCGGAGCTGAGCGTCCGGCGGCCTGAACAGGAGAGGCGAGAGAGAGAGG
GTGCAGGTACCAGAAGAATGGGTCCGCCGCCGGAGAAGCGGCGGACGCTGGTGCTGGTGA
ACCTGGCGTCCATCATGGAGCGCGCCGACGAGGCGCTGCTGCCGGCGGTGTACCGGGAGG
TGGGCGCCGCGCTGCACGCCACGCCCACGGGGCTCGGCGCCCTCACGCTGTACCGCTCCA
TCGTGCAGGCCGCCTGCTACCCGGTGGCGGCCTACGCCGCGTCGCGCCACAACCGCGCCC
ACGTCATCGCGCTGGGGGCCTTCCTCTGGGCCGCCGCCACCTTCCTCGTCGCCGTCTCCG
ACACCTTCCTCCAGGTTGCAATTTCAAGGGGCTTGAACGGCATTGGTCTAGCTCTCGTCA
TACCAGCAGTCCAGTCGCTGGTAGCCGACTCCACTGACGACGACAACCGCGGCACAGCAT
TCGGATGGCTGCAACTGACCAGCAGCATCGGCTCCGTATTCGGGGGATTCTTTGCCTTAC
TGCTGGCCCAGACTACAGTCTTGGGGATCGAAGGATGGCGTATTGCCTTCCACCTCGTCG
CGATCGTCAGCGTCATCGTCGGCACCCTCGTGTGGTTCTTCGCCGTGGATCCCCATTTCC
CCACAAACGATGCCGCACCACCATCCAGCAAAAAGTCCGCGCTTGATGAAGCAAGGGAAC
TGATCATGGAGGCCAGGTCCATAGTCCAGATCCCGACGTTCCAGGTCTTCGTTGCCCAGG
GCGTCAGCGGCTCGTTCCCGTGGTCAGCGCTGTCGTTCTTGTCCATGTGGCTGGAGCTCG
TCGGGTTCAGCCACGAGGACACCGCCGTCCTCACGACCACCTTCGCTGTCGCCACCTCCG
TCGGCGGCCTTCTTGGCGGGAAGATGGGGGATTCGCTCGCTCGGCGGTATCCGAACGCTG
GGAGGATCGTGCTGTCTCAGATAAGCGCCGGCTCTGCTGTTCCTTTGGCCGCTGTTCTTC
TGCTGGGCTTGCCTGATAATCCGTCCACGTCCAGTGGTGTTGCCCATGGACTTGTTCTGT
TCGTCATGGGACTCATCATCTCTTGGAACGGAGCTGCTACAAACTGCCCGATTTTTGCGG
AGATCGTGCCCGAGAAGCAAAGGACGAGCATCTACGCTCTGGACAGAACCTTCGAGTCCA
TTCTGGCGTCGTTTGCGCCTCCGGTCGTTGGCCTGTTGTCGCAGCAAGTCTACGGCTTCA
AACAGGACGACGGCAGAGGGAGCAGCCCTGGGCAAGACCGGGAGAACGCGGCGTCGCTGG
CCAAGGCGCTGTACACGGCCATCTCCATACCGATGGTCATCTGCACCTCCATATACACGT
TCATGTACCGCACCTACCCTCGAGACAGGGAGCGTGCGCGCATGCAGTCGGTGATTCAGT
CAGAGTTGGACCAGATTGAGCTGCTGGGCGGTCCGAGTTTAGGAGGCGGCGGCGACGGCG
ACGGTGATAAACCTGACGAGGTTGATGGCAGTTATGGTTCTGAAAGATCTGCTGAGGCCG
ATGCCGGCACTGAAAAACTACTAGGAAGGAAACCATGAGTTGTGACGAACAGAAGAACCT
ACTAGGAGGACCATTCATGTTGAAGAGGATGATAGATGTTCCTGCCGATTTTAGGAACTT
GTAATTGTAACACGACGATCAATATGATTCACTAAAGTGACCGTTCTTTTTTCTTCC