Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Zea mays ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d020220_T003
CDS Infomation	cds chromosome:B73_RefGen_v4:7:100663601:100665645:1 gene:Zm00001d020220 gene_biotype:protein_coding transcript_biotype:protein_coding description:Isochorismate synthase 2 chloroplastic
Sequence	ATGCTCCTCGTTTCCGATCCTTTCGGCCTTTTCTGGTCTTGGTCACCTACGCAGGCGGAC CGTGCGCTGATATGTTTTGCACGTGCACATGCATCACAGGTGGGGAGATGGGCGCGCTTG TCGTGCTCGCTGTCCATGAACGGGTGCGCGCCGGGCGCCGGGGACCGCGGCGCGGTGTGC GTGCGCGAGACGCGGGCGCTGCCGGCCGCGCCGGCGCCGCACGACGCAGTGGGGCGGCTC AGGGCCGCCGTGGACGCGCTCTGGTCCAACGCAGCGCCACCGGCCGCGCCCTCCGGCATC ATCCGCATCGAGGTGCCCATCACGCAGCGGGTGGACGCCGTGGAGTGGCTGCACGCGCAG ACCACGCTGCCCCGCTGCTTCTTCTCGGCCCGGGCGCCGTTGCCCGACGCGCCCGCCCTC GCCGGCAACGGCAACGGCAACGGCAGTGTCCATCGGCAGCAGCCGGTGAGTGTCGCGGGC GTGGGTTCGGCGGTCTTCTTCCGAGGGACGGAGCCCTTTTCTCTAGCTGATTGGCGCGCA ATCAAGAGATTTCTTCCAAGGGACTGTCCACTGGTCCGCGCATATGGCGCCATCCGTTTC GACGCCACGAGTGACGCTTCCGTTGAATGGGAGGACTACGGCTCATTCTACTTCGTTGTT CCTCAAGTCGAGTTCAATGAGCTCGAGGAGAGCTCAGTCCTCGCGACGACCATCGCGTGG GACGACTCGCTCTCATGGACATGGCACAACGCCGTGGAGGAGCTCCAATCGACTCTGCGA AAGATATCGCCTTGCTCTTCTGTTCAAGCGAACAAGGCCAGCCTACAGACAGCCATCGTA AGTCTCAATCATGTCCCGACCAAGGCGTCTTGGGATCTTGCAGTTACTAAAGCTCTCCAT ATGATCAAGGGCAGGCAAAGAGAATTGGTAAAGGTTGTACTGGCAAGGTGTAGCAGATAC ATTACTGACACTTGCATTGACCCTGTGGAACTGCTGGCTTGCTTGAAGGCTGAGGGCCAA AATGCTTATCAATTCTGCATACAGCCACCGGGTGCTCCTGCGTTTGTCGGAAATAGCCCA GAGCAACTATTTCATCGGAAGTACTTGAACATTTCCAGCGAGGCTCTAGCTGGTACTCGG GCAAGAGGGAAGACAAGGGCAGATGACTTTCAAATCGGTCAGGATTTGCTTCTAAGTAGC AAAGAGGACATCGAATTCACTATAGTACGGGACAGCATCAAGAACAAGCTGGAGGCAAGT TGA

Peptide Sequence

PEP ID	Zm00001d020220_P003
PEP Infomation	pep chromosome:B73_RefGen_v4:7:100663601:100665645:1 gene:Zm00001d020220 transcript:Zm00001d020220_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:Isochorismate synthase 2 chloroplastic
Sequence	MLLVSDPFGLFWSWSPTQADRALICFARAHASQVGRWARLSCSLSMNGCAPGAGDRGAVC VRETRALPAAPAPHDAVGRLRAAVDALWSNAAPPAAPSGIIRIEVPITQRVDAVEWLHAQ TTLPRCFFSARAPLPDAPALAGNGNGNGSVHRQQPVSVAGVGSAVFFRGTEPFSLADWRA IKRFLPRDCPLVRAYGAIRFDATSDASVEWEDYGSFYFVVPQVEFNELEESSVLATTIAW DDSLSWTWHNAVEELQSTLRKISPCSSVQANKASLQTAIVSLNHVPTKASWDLAVTKALH MIKGRQRELVKVVLARCSRYITDTCIDPVELLACLKAEGQNAYQFCIQPPGAPAFVGNSP EQLFHRKYLNISSEALAGTRARGKTRADDFQIGQDLLLSSKEDIEFTIVRDSIKNKLEAS

Transcript Sequence

Transcript ID	Zm00001d020220_T003
Transcript Infomation	cdna chromosome:B73_RefGen_v4:7:100663601:100665645:1 gene:Zm00001d020220 gene_biotype:protein_coding transcript_biotype:protein_coding description:Isochorismate synthase 2 chloroplastic
Sequence	ATGCTCCTCGTTTCCGATCCTTTCGGCCTTTTCTGGTCTTGGTCACCTACGCAGGCGGAC CGTGCGCTGATATGTTTTGCACGTGCACATGCATCACAGGTGGGGAGATGGGCGCGCTTG TCGTGCTCGCTGTCCATGAACGGGTGCGCGCCGGGCGCCGGGGACCGCGGCGCGGTGTGC GTGCGCGAGACGCGGGCGCTGCCGGCCGCGCCGGCGCCGCACGACGCAGTGGGGCGGCTC AGGGCCGCCGTGGACGCGCTCTGGTCCAACGCAGCGCCACCGGCCGCGCCCTCCGGCATC ATCCGCATCGAGGTGCCCATCACGCAGCGGGTGGACGCCGTGGAGTGGCTGCACGCGCAG ACCACGCTGCCCCGCTGCTTCTTCTCGGCCCGGGCGCCGTTGCCCGACGCGCCCGCCCTC GCCGGCAACGGCAACGGCAACGGCAGTGTCCATCGGCAGCAGCCGGTGAGTGTCGCGGGC GTGGGTTCGGCGGTCTTCTTCCGAGGGACGGAGCCCTTTTCTCTAGCTGATTGGCGCGCA ATCAAGAGATTTCTTCCAAGGGACTGTCCACTGGTCCGCGCATATGGCGCCATCCGTTTC GACGCCACGAGTGACGCTTCCGTTGAATGGGAGGACTACGGCTCATTCTACTTCGTTGTT CCTCAAGTCGAGTTCAATGAGCTCGAGGAGAGCTCAGTCCTCGCGACGACCATCGCGTGG GACGACTCGCTCTCATGGACATGGCACAACGCCGTGGAGGAGCTCCAATCGACTCTGCGA AAGATATCGCCTTGCTCTTCTGTTCAAGCGAACAAGGCCAGCCTACAGACAGCCATCGTA AGTCTCAATCATGTCCCGACCAAGGCGTCTTGGGATCTTGCAGTTACTAAAGCTCTCCAT ATGATCAAGGGCAGGCAAAGAGAATTGGTAAAGGTTGTACTGGCAAGGTGTAGCAGATAC ATTACTGACACTTGCATTGACCCTGTGGAACTGCTGGCTTGCTTGAAGGCTGAGGGCCAA AATGCTTATCAATTCTGCATACAGCCACCGGGTGCTCCTGCGTTTGTCGGAAATAGCCCA GAGCAACTATTTCATCGGAAGTACTTGAACATTTCCAGCGAGGCTCTAGCTGGTACTCGG GCAAGAGGGAAGACAAGGGCAGATGACTTTCAAATCGGTCAGGATTTGCTTCTAAGTAGC AAAGAGGACATCGAATTCACTATAGTACGGGACAGCATCAAGAACAAGCTGGAGGCAAGT TGA