Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d020103_T003
CDS Infomation

cds chromosome:B73_RefGen_v4:7:92281883:92290430:-1 gene:Zm00001d020103 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein

Sequence

ATGCTTCCTTCCCGCCATCTCCGCGCCGCCGCGCGGCAGCGAAGCCACAGGCGGCCGCCC
GCCCCTGCCGACGCTTGCATTACGGGCAAGCCTGATATGGAGGTCATCCGGCGCAACAGA
GCCATCACGGCGCACATGCGTGCGGGCCGCGTTCCAGACGCCGAGCGCCTATTCGCCGCG
ATGCCCCGCCGTTCCACCTCCACCTACAACACCATGCTCGCCGGGTACGCCGCCAACGGA
CGCCTCCCGCAGGCGCTCTCCTTCTTCCGTTCCATTCCGCGCCCCGATTCCTTCTCCTAC
AACACGCTCCTGCATGCGCTGGGGGTGTCGTCATCGCTCGCCGACGTGCGTGCTCTGTTC
GACGAAATGCCCGTGAAGGATTCCGTGTCCTACAACGTCATGATCTCATCTCACGCTAAC
CATGGTCTGGTCTCGCTCGCACGGCACTACTTTGATCTCGCCCCAGAGAAGGATGCTGTC
TCGTGGAATGGCATGCTTGCTGCCTATGTCCGGAACGGACGGATCCAAGAGGCAAGGGAG
CTGTTCGATTCAAGGACAGAGTGGGATGCAATTTCTTGGAATGCTTTGATGGCTGGGTAT
GTGCAGCGCAGTCAGATAGAAGAAGCGCAGAAAATGTTTAATAAAATGCCACAGAGAGAT
GTTGTTTCCTGGAATACTATGGTGTCCGGTTATGCGAGGAGAGGAGATATGGCTGAGGCA
AGAAGGTTGTTTGATGTGGCCCCAATTAGAGATGTGTTCACCTGGACAGCTATTGTCTCT
GGATACGCACAAAATGGGATGCTCGAAGAGGCCAAGAGGGTGTTTGATGCCATGCCAGAT
AAGAATGCTGTGTCGTGGAATGCAATGATGGCAGCATATGTCCAGCGGAGGATGATGGAG
GAGGCAAAGGAGTTGTTTGATGCTATGCCCTGTAGGAATGTGGCTTCGTGGAACACAATG
TTGACAGGGTATGCTCAGGCTGGGATGCTGGACGAGGCGAGAGCAATTTTTGGCATGATG
CCCCAGAAGGATGCAGTCTCATGGGCTGCAATGCTGGCTGCGTATTCACAAATTGGTTTC
AGTGAGGAAACACTGCAGTTGTTCAAAGAGATGGGACGTTGTGGTGAGTGGGTGAATAGG
TCAGCATTTGCTTGTGTTTTGAGCACATGTGCTGACATTGCTGCACTTGAGTGTGGAATG
CAGCTGCATAGTAGGTTGATTAAGGCTGGTTATGGGGTGGGCTGCTTTGTTGGAAATGCA
CTTCTAGCTATGTACTTCAAATGCGGAAGCATGGAGGAAGCTCACAGTGCATTTGAAGAG
ATGGAGGAGAGGGATGTTGTTTCGTGGAATACTATGATTGCAGGCTATGCACGTCATGGT
TTTGGCAAGGAAGCACTTGAGGTTTTTGATACCATGAGGAAGACATCTACCAAGCCAGAC
GATATTACTTTGGTTGGAGTACTTGCAGCATGTAGTCATTCTGGCTTGGTTGAGAAAGGG
ATTTCATACTTCTATTCAATGCACCGGGATTTTGGTGTGGCAACAAAACCTGAACACTAC
ACTTGTATGATAGATCTTCTTGGCCGTGCTGGGCGATTGGATGAAGCAGTTAATCTTATG
AAGGACATGCCTTTTGAGCCTGACTCTACCATGTGGGGTGCATTACTTGGTGCCAGTAGG
ATCCACCGCAACTCTGAACTTGGCAGGAATGCAGCTGAGAAAATATTTGAGTTGGAACCT
GAAAATGCAGGCATGTATGTCTTGCTTTCAAATATATATGCATCATCTGGCAAATGGCGT
GATGTGGACAAGATGAGACATATAATGCATGAGCGTGGTGTGAAGAAGGTTCCAGGATTC
AGTTGGATTGAGGTGCAGAACAAAGTCCACACTTTCTCAGTGGGTGATTCTGTGCATCCT
GAAAGAGAGGACATATATGCTTTCCTGGAAGATCTTGACATCAGGATGAAAAAGGCTGGA
TATGTATCAGCTACAGATATGGTTTTGCATGATGTTGAGGAGGAAGAGAAAGAGCACATG
CTAAAGTATCATAGCGAGAAGCTTGCTGTTGCTTATGGTATTCTAAAAATTCCTCCTGGG
AGGCCCATCCGGGTGATAAAGAACCTGAGAGTATGCAGAGACTGTCACACTGCTTTCAAG
TGTATCTCTGCGATTGAGGGAAGACTGATCATACTGCGGGATTCCAACCGGTTTCACCAT
TTTAGAGATGGTTCTTGTTCATGTGGTGATTACTGGTGA

Peptide Sequence

PEP ID

Zm00001d020103_P003
PEP Infomation

pep chromosome:B73_RefGen_v4:7:92281883:92290430:-1 gene:Zm00001d020103 transcript:Zm00001d020103_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein

Sequence

MLPSRHLRAAARQRSHRRPPAPADACITGKPDMEVIRRNRAITAHMRAGRVPDAERLFAA
MPRRSTSTYNTMLAGYAANGRLPQALSFFRSIPRPDSFSYNTLLHALGVSSSLADVRALF
DEMPVKDSVSYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEARE
LFDSRTEWDAISWNALMAGYVQRSQIEEAQKMFNKMPQRDVVSWNTMVSGYARRGDMAEA
RRLFDVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMPDKNAVSWNAMMAAYVQRRMME
EAKELFDAMPCRNVASWNTMLTGYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGF
SEETLQLFKEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGNA
LLAMYFKCGSMEEAHSAFEEMEERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPD
DITLVGVLAACSHSGLVEKGISYFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLM
KDMPFEPDSTMWGALLGASRIHRNSELGRNAAEKIFELEPENAGMYVLLSNIYASSGKWR
DVDKMRHIMHERGVKKVPGFSWIEVQNKVHTFSVGDSVHPEREDIYAFLEDLDIRMKKAG
YVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILKIPPGRPIRVIKNLRVCRDCHTAFK
CISAIEGRLIILRDSNRFHHFRDGSCSCGDYW

Transcript Sequence

Transcript ID

Zm00001d020103_T003
Transcript Infomation

cdna chromosome:B73_RefGen_v4:7:92281883:92290430:-1 gene:Zm00001d020103 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein

Sequence

GCAACAATTACAGGCACAAGCCAGAACCACAGTTCGGAAAACCACCCATGCTTCCTTCCC
GCCATCTCCGCGCCGCCGCGCGGCAGCGAAGCCACAGGCGGCCGCCCGCCCCTGCCGACG
CTTGCATTACGGGCAAGCCTGATATGGAGGTCATCCGGCGCAACAGAGCCATCACGGCGC
ACATGCGTGCGGGCCGCGTTCCAGACGCCGAGCGCCTATTCGCCGCGATGCCCCGCCGTT
CCACCTCCACCTACAACACCATGCTCGCCGGGTACGCCGCCAACGGACGCCTCCCGCAGG
CGCTCTCCTTCTTCCGTTCCATTCCGCGCCCCGATTCCTTCTCCTACAACACGCTCCTGC
ATGCGCTGGGGGTGTCGTCATCGCTCGCCGACGTGCGTGCTCTGTTCGACGAAATGCCCG
TGAAGGATTCCGTGTCCTACAACGTCATGATCTCATCTCACGCTAACCATGGTCTGGTCT
CGCTCGCACGGCACTACTTTGATCTCGCCCCAGAGAAGGATGCTGTCTCGTGGAATGGCA
TGCTTGCTGCCTATGTCCGGAACGGACGGATCCAAGAGGCAAGGGAGCTGTTCGATTCAA
GGACAGAGTGGGATGCAATTTCTTGGAATGCTTTGATGGCTGGGTATGTGCAGCGCAGTC
AGATAGAAGAAGCGCAGAAAATGTTTAATAAAATGCCACAGAGAGATGTTGTTTCCTGGA
ATACTATGGTGTCCGGTTATGCGAGGAGAGGAGATATGGCTGAGGCAAGAAGGTTGTTTG
ATGTGGCCCCAATTAGAGATGTGTTCACCTGGACAGCTATTGTCTCTGGATACGCACAAA
ATGGGATGCTCGAAGAGGCCAAGAGGGTGTTTGATGCCATGCCAGATAAGAATGCTGTGT
CGTGGAATGCAATGATGGCAGCATATGTCCAGCGGAGGATGATGGAGGAGGCAAAGGAGT
TGTTTGATGCTATGCCCTGTAGGAATGTGGCTTCGTGGAACACAATGTTGACAGGGTATG
CTCAGGCTGGGATGCTGGACGAGGCGAGAGCAATTTTTGGCATGATGCCCCAGAAGGATG
CAGTCTCATGGGCTGCAATGCTGGCTGCGTATTCACAAATTGGTTTCAGTGAGGAAACAC
TGCAGTTGTTCAAAGAGATGGGACGTTGTGGTGAGTGGGTGAATAGGTCAGCATTTGCTT
GTGTTTTGAGCACATGTGCTGACATTGCTGCACTTGAGTGTGGAATGCAGCTGCATAGTA
GGTTGATTAAGGCTGGTTATGGGGTGGGCTGCTTTGTTGGAAATGCACTTCTAGCTATGT
ACTTCAAATGCGGAAGCATGGAGGAAGCTCACAGTGCATTTGAAGAGATGGAGGAGAGGG
ATGTTGTTTCGTGGAATACTATGATTGCAGGCTATGCACGTCATGGTTTTGGCAAGGAAG
CACTTGAGGTTTTTGATACCATGAGGAAGACATCTACCAAGCCAGACGATATTACTTTGG
TTGGAGTACTTGCAGCATGTAGTCATTCTGGCTTGGTTGAGAAAGGGATTTCATACTTCT
ATTCAATGCACCGGGATTTTGGTGTGGCAACAAAACCTGAACACTACACTTGTATGATAG
ATCTTCTTGGCCGTGCTGGGCGATTGGATGAAGCAGTTAATCTTATGAAGGACATGCCTT
TTGAGCCTGACTCTACCATGTGGGGTGCATTACTTGGTGCCAGTAGGATCCACCGCAACT
CTGAACTTGGCAGGAATGCAGCTGAGAAAATATTTGAGTTGGAACCTGAAAATGCAGGCA
TGTATGTCTTGCTTTCAAATATATATGCATCATCTGGCAAATGGCGTGATGTGGACAAGA
TGAGACATATAATGCATGAGCGTGGTGTGAAGAAGGTTCCAGGATTCAGTTGGATTGAGG
TGCAGAACAAAGTCCACACTTTCTCAGTGGGTGATTCTGTGCATCCTGAAAGAGAGGACA
TATATGCTTTCCTGGAAGATCTTGACATCAGGATGAAAAAGGCTGGATATGTATCAGCTA
CAGATATGGTTTTGCATGATGTTGAGGAGGAAGAGAAAGAGCACATGCTAAAGTATCATA
GCGAGAAGCTTGCTGTTGCTTATGGTATTCTAAAAATTCCTCCTGGGAGGCCCATCCGGG
TGATAAAGAACCTGAGAGTATGCAGAGACTGTCACACTGCTTTCAAGTGTATCTCTGCGA
TTGAGGGAAGACTGATCATACTGCGGGATTCCAACCGGTTTCACCATTTTAGAGATGGTT
CTTGTTCATGTGGTGATTACTGGTGATTATGACTAGATATTTCATGCAAAGAAATTCTGA
ATGAACTGCACTGGACTTCGAAATCATGATAATGCAATGCATACTAAGGACCAAAAAAGT
AGGCATTCTGATGTATGGATCTAGCCCTGTTAGCCACTACCCACTAGACCACCTACTTTG
CTACTGGTTCAAAAAGAAATTAGCCTGGTGATCTGCCACATTAAATGGCTTTCAGTTCAT
TGCTTATGTACAAGTTAACAAATTTCAATTAAAATGACCATGCCAGGTAGAGGGCGCACT
CCATTTAGAGATATATCCAACAACAGGATCATCACAAGTGTTACACCTCGGCCAATCTTT
CTTCCAAAATCAATAATATATGACTATGCAATTGTCCATGACCATGAGCAAGTGTTGTAA
CCTTGGGCACACCACTACAGCCGTAACTGTTGCCCTTGTGAACGTAAAATGCAATGGGAT
AAGGGTCGTCTGGTGCTGAAATGACTGAGGAACAGAGGGAAGAAAGGAATATAAAGCAAC
ATATGAATACCAAGCAAAGGGTAAGGCTGAAACAGAAAAATTTCAGGGAGCAATTGCTGG
ATCATCTGTACTGGCCCCACCTACTCTTGAGTCTTGATATGTTTGTTTAGGATTCAACAA
TTTTGCAAGCATCAATCACGAGACAAGGAAAATGTTGATAGGGCTGACCCGGACCCCACA
TTATATAGGCTACAGGACGGGCCTTAGTAGTTCCCTTTTGGAGTGTATACTGTGTCCAGT
GATGCAGAATGTACAAGATCTGAAATCTCTCCAAGTGAAAGGAACTGCAACCCCATAGAG
CAATGAATGAACTAATGAGATAGTTAACTCAATCACTATTAAAGACTACCCTGATAAACT
TCTTTGTGTCGATCTGTTTCTGAGCACACGTGTGACTATCTGACATTCGTCAAGCTAATG
GACACAGGCATTCACAAAGAGTGCGTCCACTGGTATTGAAGAGAAGGTGCTGAAGTTGGT
TGAGATAGACTTTCCAGAGGATATGATGAGCAGTGCCCTGAAGTGCGTGTCTATAATGTA
TAAATTTACAATGTTGTGAAAATTCTGAATACAGTGAAGCAGTCAGAAACGTTCAGAGTT
CTGTTTTAACTTTTAAGTGCAGAGCTCTGAATGTTCTGAAACTCCGGATGTTCTGTTTTA
ACATTCAGAGAATTCCAAACCTTTCTAGCTTATGGAGGCACCGTTTTCGTTTTAAGCGTT
GCTG