Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d019988_T005
CDS Infomation

cds chromosome:B73_RefGen_v4:7:83010315:83023700:-1 gene:Zm00001d019988 gene_biotype:protein_coding transcript_biotype:protein_coding description:Homoserine dehydrogenase

Sequence

ATGCAGAGCCTAACCGTAGCAAGAGCGCTTCCTCCCGCCGTGGCCACAGCTCGGCGGCGG
CCGCGCGCGTCCTCTTCTAGCAGGGAAGCGGTTTTACAATGTTGGAAGTACGAATTAAGT
CAAGACCAATATCTGGGAGGATCCCTAAGGATAGGTTCGTCTCAAGGAAGTTTGGACATA
CATCGCTCAACAAATTTGCTCAGACCAGCTGCTGCATCTGTTTCAGTTGAACAAGATGAA
GTCAATACTTATCTTCCAAAAGGTGATATGTGGTCTGTGCACAAGTTTGGTGGAACCTGT
ATGGGAACATCCCAAAGAATCCAGAGTGTTGCAAATATAGTTCTTGGTGATTCTTCTGAG
AGGAAGCTGATCATTGTTTCTGCAATGTCTAAAGTAACCGACATGATGTACAACCTTGTA
CAGAAGGCTCAGTCAAGGGATGATTCATATACAATAGCATTGGAAGAAGTTTTTGAGAAG
CATATGGTTGCTGCAAAGGATCTTATTGATGGAGAAGATCTTGCAAGATTCTTGTCTCAG
TTGCACTCAGACGTCAGCAACTTGCGAGCCATGCTCCGTGCTATTTATATAGCTGGGCAT
GCGACAGAGTCTTTCTCTGACTTTGTTGTTGGACATGGAGAGTTGTGGTCTGCGCAAATG
CTATCTTATGCAATAAAGAAGTCTGGGGCACCCTGCAGTTGGATGGATACAAGAGAAGTT
CTAGTTGTAAAACCCAGTGGCTGTAATCAAGTAGACCCTGATTACTTGGAATCTGAGAAG
CGACTTCTGAAGTGGTTTTCTCGACAACCAGCTGAGATAATAGTTGCTACAGGATTTATT
GCAAGTACAGCTGAAAACATTCCAACAACTCTAAAAAGGGATGGAAGTGATTTCTCAGCA
GCCATAGTTGGTTCTCTTGTCAGGGCACGCCAGGTCACTATTTGGACTGATGTTGACGGG
GTATTTAGCGCAGATCCTAGAAAAGTTAGTGAGGCTGTGATCTTAAGCACTTTGTCTTAT
CAGGAGGCCTGGGAAATGTCATACTTTGGGGCAAATGTTTTGCATCCGCGCACCATTATA
CCTGTGATGAAAGACAACATTCCCATTGTTATTAGGAACATGTTCAATCTCTCTGCCTCT
GGAACAATGATTTGCAAGCAGCCGGCCAATGAAAATGGTGATTTAGATGCATGTGTCAAA
TCATTTGCTACTATCGATAATTTAGCACTTGTTAATGTTGAAGGAACTGGAATGGCTGGC
GTTCCAGGTACAGCAAGTGCTATATTTAGTACTGTTAAAGATGTTGGAGCTAATGTTATC
ATGATATCTCAGGCTAGCAGTGAACATTCAGTATGCTTTGCTGTTCCAGAAAAGGAAGTT
GCTGCAGTTTCTGCTAGGTTACATGATAGGTTTCATGAGGCATTAGCAGCAGGGAGGTTG
TCTAAGGTTGAAGTTATTAATGGTTGCAGCATTCTTGCTGCTGTTGGTCTGAGGATGGCC
AGCACTCCTGGAGTTAGTGCAATACTTTTTGATGCATTAGCAAAGGCAAACATTAATGTT
CGAGCAATAGCTCAAGGTTGCAGTGAATACAATATCACTGTTGTATTGAAGCAAGAAGAT
TGTGTAAGGGCTCTGAGAGCTGCTCACTCAAGGTTCTTCCTCTCCAAAACGACACTTGCA
GTTGGCATCATTGGACCTGGTTTAATTGGTAGAACACTCCTTAACCAGCTCAAGGATCAG
GTTGCTGCTCTCAAGGAAAATATGAACATTGATCTGCGTGTCATTGGAATAACTGGCTCA
AGTACAATGCTTTTGAGCGACACGGGAATAGACTTAACCCAGTGGAAACAACTTCTAAAA
AAGGAAGCAGAACCAGCTGATATTGATAGTTTTGTTCATCATTTATCCGATAATCACGTA
TTTCCAAACAAAGTTTTGGTGGACTGCACAGCAGATACAAGTGTTGCATCCCACTATTAT
AATTGGTTAAAGAAGGGTATTCATGTCATCACACCAAATAAGAAAGCAAATTCTGGGCCA
CTTGATCAGTACCTGAAATTGCGGACTCTGCAACGTGCCTCGTACACTCATTACTTTTAT
GAAGCAACTGTTGGTGCTGGCCTCCCAATCATTAGTACCTTGCGAGGTCTTCTGGAGACG
GGTGACAAGATACTGCGTATTGAGGGCATTTTCAGTGGAACTTTGAGTTATATATTTAAT
AATTTCGAAGGAACAAGGGCATTCAGTGATGTCGTTGCTGAAGCAAAAGAGGCGGGATAC
ACTGAACCTGACCCAAGAGATGATCTATCTGGAACTGATGTTGCCCGAAAGATTATTTTT
CTTTTTTTCATTGAATGGGACAATTTATGCTATCTGTATTATGGATGGATCAGCAAGAGT
CCTTACAGAACATATAAAACTAAAAGGTTGAGGATATGA

Peptide Sequence

PEP ID

Zm00001d019988_P005
PEP Infomation

pep chromosome:B73_RefGen_v4:7:83010315:83023700:-1 gene:Zm00001d019988 transcript:Zm00001d019988_T005 gene_biotype:protein_coding transcript_biotype:protein_coding description:Homoserine dehydrogenase

Sequence

MQSLTVARALPPAVATARRRPRASSSSREAVLQCWKYELSQDQYLGGSLRIGSSQGSLDI
HRSTNLLRPAAASVSVEQDEVNTYLPKGDMWSVHKFGGTCMGTSQRIQSVANIVLGDSSE
RKLIIVSAMSKVTDMMYNLVQKAQSRDDSYTIALEEVFEKHMVAAKDLIDGEDLARFLSQ
LHSDVSNLRAMLRAIYIAGHATESFSDFVVGHGELWSAQMLSYAIKKSGAPCSWMDTREV
LVVKPSGCNQVDPDYLESEKRLLKWFSRQPAEIIVATGFIASTAENIPTTLKRDGSDFSA
AIVGSLVRARQVTIWTDVDGVFSADPRKVSEAVILSTLSYQEAWEMSYFGANVLHPRTII
PVMKDNIPIVIRNMFNLSASGTMICKQPANENGDLDACVKSFATIDNLALVNVEGTGMAG
VPGTASAIFSTVKDVGANVIMISQASSEHSVCFAVPEKEVAAVSARLHDRFHEALAAGRL
SKVEVINGCSILAAVGLRMASTPGVSAILFDALAKANINVRAIAQGCSEYNITVVLKQED
CVRALRAAHSRFFLSKTTLAVGIIGPGLIGRTLLNQLKDQVAALKENMNIDLRVIGITGS
STMLLSDTGIDLTQWKQLLKKEAEPADIDSFVHHLSDNHVFPNKVLVDCTADTSVASHYY
NWLKKGIHVITPNKKANSGPLDQYLKLRTLQRASYTHYFYEATVGAGLPIISTLRGLLET
GDKILRIEGIFSGTLSYIFNNFEGTRAFSDVVAEAKEAGYTEPDPRDDLSGTDVARKIIF
LFFIEWDNLCYLYYGWISKSPYRTYKTKRLRI

Transcript Sequence

Transcript ID

Zm00001d019988_T005
Transcript Infomation

cdna chromosome:B73_RefGen_v4:7:83010315:83023700:-1 gene:Zm00001d019988 gene_biotype:protein_coding transcript_biotype:protein_coding description:Homoserine dehydrogenase

Sequence

GCTGCGAACTTGCGTTGCGACCGTGCATTCCGTTCCTCTCCTCTCTCGGCTCTCGGCGAG
CGAGATGCAGAGCCTAACCGTAGCAAGAGCGCTTCCTCCCGCCGTGGCCACAGCTCGGCG
GCGGCCGCGCGCGTCCTCTTCTAGCAGGGAAGCGGTTTTACAATGTTGGAAGTACGAATT
AAGTCAAGACCAATATCTGGGAGGATCCCTAAGGATAGGTTCGTCTCAAGGAAGTTTGGA
CATACATCGCTCAACAAATTTGCTCAGACCAGCTGCTGCATCTGTTTCAGTTGAACAAGA
TGAAGTCAATACTTATCTTCCAAAAGGTGATATGTGGTCTGTGCACAAGTTTGGTGGAAC
CTGTATGGGAACATCCCAAAGAATCCAGAGTGTTGCAAATATAGTTCTTGGTGATTCTTC
TGAGAGGAAGCTGATCATTGTTTCTGCAATGTCTAAAGTAACCGACATGATGTACAACCT
TGTACAGAAGGCTCAGTCAAGGGATGATTCATATACAATAGCATTGGAAGAAGTTTTTGA
GAAGCATATGGTTGCTGCAAAGGATCTTATTGATGGAGAAGATCTTGCAAGATTCTTGTC
TCAGTTGCACTCAGACGTCAGCAACTTGCGAGCCATGCTCCGTGCTATTTATATAGCTGG
GCATGCGACAGAGTCTTTCTCTGACTTTGTTGTTGGACATGGAGAGTTGTGGTCTGCGCA
AATGCTATCTTATGCAATAAAGAAGTCTGGGGCACCCTGCAGTTGGATGGATACAAGAGA
AGTTCTAGTTGTAAAACCCAGTGGCTGTAATCAAGTAGACCCTGATTACTTGGAATCTGA
GAAGCGACTTCTGAAGTGGTTTTCTCGACAACCAGCTGAGATAATAGTTGCTACAGGATT
TATTGCAAGTACAGCTGAAAACATTCCAACAACTCTAAAAAGGGATGGAAGTGATTTCTC
AGCAGCCATAGTTGGTTCTCTTGTCAGGGCACGCCAGGTCACTATTTGGACTGATGTTGA
CGGGGTATTTAGCGCAGATCCTAGAAAAGTTAGTGAGGCTGTGATCTTAAGCACTTTGTC
TTATCAGGAGGCCTGGGAAATGTCATACTTTGGGGCAAATGTTTTGCATCCGCGCACCAT
TATACCTGTGATGAAAGACAACATTCCCATTGTTATTAGGAACATGTTCAATCTCTCTGC
CTCTGGAACAATGATTTGCAAGCAGCCGGCCAATGAAAATGGTGATTTAGATGCATGTGT
CAAATCATTTGCTACTATCGATAATTTAGCACTTGTTAATGTTGAAGGAACTGGAATGGC
TGGCGTTCCAGGTACAGCAAGTGCTATATTTAGTACTGTTAAAGATGTTGGAGCTAATGT
TATCATGATATCTCAGGCTAGCAGTGAACATTCAGTATGCTTTGCTGTTCCAGAAAAGGA
AGTTGCTGCAGTTTCTGCTAGGTTACATGATAGGTTTCATGAGGCATTAGCAGCAGGGAG
GTTGTCTAAGGTTGAAGTTATTAATGGTTGCAGCATTCTTGCTGCTGTTGGTCTGAGGAT
GGCCAGCACTCCTGGAGTTAGTGCAATACTTTTTGATGCATTAGCAAAGGCAAACATTAA
TGTTCGAGCAATAGCTCAAGGTTGCAGTGAATACAATATCACTGTTGTATTGAAGCAAGA
AGATTGTGTAAGGGCTCTGAGAGCTGCTCACTCAAGGTTCTTCCTCTCCAAAACGACACT
TGCAGTTGGCATCATTGGACCTGGTTTAATTGGTAGAACACTCCTTAACCAGCTCAAGGA
TCAGGTTGCTGCTCTCAAGGAAAATATGAACATTGATCTGCGTGTCATTGGAATAACTGG
CTCAAGTACAATGCTTTTGAGCGACACGGGAATAGACTTAACCCAGTGGAAACAACTTCT
AAAAAAGGAAGCAGAACCAGCTGATATTGATAGTTTTGTTCATCATTTATCCGATAATCA
CGTATTTCCAAACAAAGTTTTGGTGGACTGCACAGCAGATACAAGTGTTGCATCCCACTA
TTATAATTGGTTAAAGAAGGGTATTCATGTCATCACACCAAATAAGAAAGCAAATTCTGG
GCCACTTGATCAGTACCTGAAATTGCGGACTCTGCAACGTGCCTCGTACACTCATTACTT
TTATGAAGCAACTGTTGGTGCTGGCCTCCCAATCATTAGTACCTTGCGAGGTCTTCTGGA
GACGGGTGACAAGATACTGCGTATTGAGGGCATTTTCAGTGGAACTTTGAGTTATATATT
TAATAATTTCGAAGGAACAAGGGCATTCAGTGATGTCGTTGCTGAAGCAAAAGAGGCGGG
ATACACTGAACCTGACCCAAGAGATGATCTATCTGGAACTGATGTTGCCCGAAAGATTAT
TTTTCTTTTTTTCATTGAATGGGACAATTTATGCTATCTGTATTATGGATGGATCAGCAA
GAGTCCTTACAGAACATATAAAACTAAAAGGTTGAGGATATGACCAGAGATAATGGGGAA
AGTGTGTTTTGGACACTGAAGAGTATGGCTTTGCTGGGAAATTGCTGGAGCCAAAGGGCT
CTCCTTGGCTGCCCCCCCCCCCAACATAGGTTGTTGTAGGGAGTGTGTGTGTTTTTATGG
ATCCTTTCATGTACGAGTGTTACTGACCTCCATAAGGAGTGCGTTGTTTTTTTAGGTCTC
TTTAGACCCTTGTCTCTCTCTTCTTAATATATATCTAAAACGCAGTCCTCCTACGTTTTT
TTCGAGAAAAAAAGTATGGCTTTGCTTGTAGGACATTATTATGTTTGATTTGTCCTTAGG
CCATCACAAATTTGTAGTTTTTGTATCCAGGACACTAGAATACTAGATGAGGAAGAAAAG
ATTGTTATGCCCTCAGCTTCACACTTTTTGCAAGGGAATCAGGTTTGAGGCTTGAACTTT
CTGATATTCCTGTGAAGAGCCTTGTGCCAGAAACACTTGCAGCATGCTCGTCAGCAGATG
AATTCATGCAGAAGCTACCATCCTTTGACGAGGACTGGGCCAGGCAACGCAGTGATGCTG
ATGCTGCAGACGAAGTCCTGCGTTACGTTGGAGTGGTGGATACGGTGAACAAGAGGGGAC
AGGTGGAGCTACGTAGGTACAAGAGGGACCACCCGTTCGCGCAGCTCTCCGGCTCCGACA
ACATCATCGCATTCACCACCTCGAGGTACAAGGAGCAGCCGCTAATCGTGCGGGGCCCAG
GCGCGGGCGCGGAGGTGACTGCGGGTGGCGTCTTCTGCGACATCCTGCGGCTGGCGTCTT
ACCTTGGCGCTCCTTCTTAGAGCTTCCACTTACAGTTGTCAATTTGAAGAGGCAGATGGA
CAGTGCCCTGCATGATGCCTCCGTGTTTAGGCTTATTATGGACTTGCTCAAAGTTGTTCT
GAATAAGTGCCAGGAAATAAGGCCTCTATCTATTTAGGCCTCTATCTTCGGGGTAGCTGA
CTAAGTGTTGTTATTGCTACGGAATCCAGAATTCTGTGAATTGAAATGAATTGT