Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d019987_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:7:82851887:82855838:1 gene:Zm00001d019987 gene_biotype:protein_coding transcript_biotype:protein_coding description:Peptidyl-prolyl cis-trans isomerase

Sequence

ATGGCGTTCTGGGGGGTGGAAGTGAAGCCCGGGAAGCCCTACACCCACATCCATCACGCT
GACCATGGCCGCCTCCGCATTTGCCAGGCTACACTGGGCAACTGTGATGCTGCTGCAAGG
ACGGTGCTGCAATGCAATGTTGGCAACAAGATTCCCATCAAACTTTGTAGTCTAAATCCG
AAATTGGCCGAGACATGCCATCTAGAGGTTGAGTTTGAGGAGGTTGATGATGTTATCTTC
TCAGTAATTGGTCATAGTTCGATACATCTCTCTGGATACTATGTCTGTGCAAGCAACAGG
TCTAATGTGGGGGATGATGAATCAGAATCTTATGGGGAAGATATTGGGCACTCCAGCACC
GATGAGGAGCATGATACCAGTGAGGACAGCTATGAATCTGACTTCATTGATGATCGTGAA
GTTCCATTATCTGAGAAGTATGGGTCTGGTTCTATAGATGACAGTGATGATGAGTGCACC
CAACGATGCCACAGACAAAAAGCTGAAAAAACGACTCAAAATGCTGAAAGACGGCGGCGC
TTGAAGAAGCACCAAGTAGGTAGCACTGATTACGATGATGATGATACTCCAGTCATGAAA
CATGTTGCGAAGCGCTGTGCTCCTAAAATATCTGATAGTGGTGATGATGACACTCCTGTC
ACAAAACCTGTTGTCAAACGTAGAGCTTCAATATTTGATAGTGACAGTGATGAAGATGAT
AATGTACCTATTTCTCTTGCATTGGGTAAGAAAGACAATGCTAAGGTTGCTGAGGAAACT
GAACATCAAAATGGACAGGCAAATGGCATCACCAAAAAAAGGATTATTGATGTCAAGAAA
AGAAAACAGTCTTCCATCAGCGAGGATCCTGCATCGTCAATGGATATGACAGATGCTAAT
GCACCATCTGTTTCAAAACAAGTTGATGAAATAAAAAAGAAATCAAAGAAAAAGATGAGA
AATCAATCAGGGGAAAATAATGAGAAGCAGTCCAATATAAGAACATTGGATGACGGGTTG
GTGGTTGAATATTTGTCAATGGGAAACAATGATGCAAAAGTGGCTTCTGATGGCTGCAAG
GTCTATATCAAATATGTTGGCATGTTGAAGGATGGGAAAATTGTTGAGTCTAATGTTAGT
GAAAAGCCTTACAAGTTCAAGCTTGGTGCTGGAAAAGTTATCCGTGGATGGGATGTTGGT
ATTCATGGTATGCGTGTTGGCGAGAAAAGAAAGCTTACAGTTCCACCTTCAATGCTCTCT
GGCGGTAAATCAGTGGGAGAAGTACCCGAAAATTCTTCAGTCATATATGAAATCGAGTTA
GTGAAAGTGAAATAA

Peptide Sequence

PEP ID

Zm00001d019987_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:7:82851887:82855838:1 gene:Zm00001d019987 transcript:Zm00001d019987_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Peptidyl-prolyl cis-trans isomerase

Sequence

MAFWGVEVKPGKPYTHIHHADHGRLRICQATLGNCDAAARTVLQCNVGNKIPIKLCSLNP
KLAETCHLEVEFEEVDDVIFSVIGHSSIHLSGYYVCASNRSNVGDDESESYGEDIGHSST
DEEHDTSEDSYESDFIDDREVPLSEKYGSGSIDDSDDECTQRCHRQKAEKTTQNAERRRR
LKKHQVGSTDYDDDDTPVMKHVAKRCAPKISDSGDDDTPVTKPVVKRRASIFDSDSDEDD
NVPISLALGKKDNAKVAEETEHQNGQANGITKKRIIDVKKRKQSSISEDPASSMDMTDAN
APSVSKQVDEIKKKSKKKMRNQSGENNEKQSNIRTLDDGLVVEYLSMGNNDAKVASDGCK
VYIKYVGMLKDGKIVESNVSEKPYKFKLGAGKVIRGWDVGIHGMRVGEKRKLTVPPSMLS
GGKSVGEVPENSSVIYEIELVKVK

Transcript Sequence

Transcript ID

Zm00001d019987_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:7:82851887:82855838:1 gene:Zm00001d019987 gene_biotype:protein_coding transcript_biotype:protein_coding description:Peptidyl-prolyl cis-trans isomerase

Sequence

CCCCTTTTCTCCTATCCCTGCACTCCCCCCCCCCCCCCCCCTGCTGCCCCGCGCCGAAGC
AGGTGTGGCGGCGCTGCGAGCCTGCAACCATCTCCGCAGACTCCGCTGCGACTCATCTGG
GCTACGACCCACGTCAAGGCTGCTAGTTGCGTTCGTTGGAGTTGCGGCTTCCGCGAATCC
CCCAATCCATCCCAGTCATGGCGTTCTGGGGGGTGGAAGTGAAGCCCGGGAAGCCCTACA
CCCACATCCATCACGCTGACCATGGCCGCCTCCGCATTTGCCAGGCTACACTGGGCAACT
GTGATGCTGCTGCAAGGACGGTGCTGCAATGCAATGTTGGCAACAAGATTCCCATCAAAC
TTTGTAGTCTAAATCCGAAATTGGCCGAGACATGCCATCTAGAGGTTGAGTTTGAGGAGG
TTGATGATGTTATCTTCTCAGTAATTGGTCATAGTTCGATACATCTCTCTGGATACTATG
TCTGTGCAAGCAACAGGTCTAATGTGGGGGATGATGAATCAGAATCTTATGGGGAAGATA
TTGGGCACTCCAGCACCGATGAGGAGCATGATACCAGTGAGGACAGCTATGAATCTGACT
TCATTGATGATCGTGAAGTTCCATTATCTGAGAAGTATGGGTCTGGTTCTATAGATGACA
GTGATGATGAGTGCACCCAACGATGCCACAGACAAAAAGCTGAAAAAACGACTCAAAATG
CTGAAAGACGGCGGCGCTTGAAGAAGCACCAAGTAGGTAGCACTGATTACGATGATGATG
ATACTCCAGTCATGAAACATGTTGCGAAGCGCTGTGCTCCTAAAATATCTGATAGTGGTG
ATGATGACACTCCTGTCACAAAACCTGTTGTCAAACGTAGAGCTTCAATATTTGATAGTG
ACAGTGATGAAGATGATAATGTACCTATTTCTCTTGCATTGGGTAAGAAAGACAATGCTA
AGGTTGCTGAGGAAACTGAACATCAAAATGGACAGGCAAATGGCATCACCAAAAAAAGGA
TTATTGATGTCAAGAAAAGAAAACAGTCTTCCATCAGCGAGGATCCTGCATCGTCAATGG
ATATGACAGATGCTAATGCACCATCTGTTTCAAAACAAGTTGATGAAATAAAAAAGAAAT
CAAAGAAAAAGATGAGAAATCAATCAGGGGAAAATAATGAGAAGCAGTCCAATATAAGAA
CATTGGATGACGGGTTGGTGGTTGAATATTTGTCAATGGGAAACAATGATGCAAAAGTGG
CTTCTGATGGCTGCAAGGTCTATATCAAATATGTTGGCATGTTGAAGGATGGGAAAATTG
TTGAGTCTAATGTTAGTGAAAAGCCTTACAAGTTCAAGCTTGGTGCTGGAAAAGTTATCC
GTGGATGGGATGTTGGTATTCATGGTATGCGTGTTGGCGAGAAAAGAAAGCTTACAGTTC
CACCTTCAATGCTCTCTGGCGGTAAATCAGTGGGAGAAGTACCCGAAAATTCTTCAGTCA
TATATGAAATCGAGTTAGTGAAAGTGAAATAAAGAAAAAATATGTCAGGCTTTTGCATGT
GCCCTATCTCAGCAGCTGCAACAGTTGCAGGAATTTTGTTGATATACAGATGACTCATGC
TCATGTTTTGCTTCCTTCTGGAAGAATTTATATGTGCCACTCGTGCCACACCATAGGACA
TCGAGCAGTGAACTGCAGCGGGTGCTTTATCCATGCATGCCTTGACTGGATACTTGGTTT
TGCACTATCTGGCTACATTACTTTGTAAACTGCATACGATGGTTGAAGCACTATTGTGGT
CTGGTGATTTGCCATATGTTTGTGACTACTTCGCGGTTCACTGCTTTGAATCATGTTTGT
TTTGCCAATA