Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d019754_T004
CDS Infomation

cds chromosome:B73_RefGen_v4:7:56516741:56522481:-1 gene:Zm00001d019754 gene_biotype:protein_coding transcript_biotype:protein_coding description:Short-chain dehydrogenase TIC 32 chloroplastic
Sequence

ATGGCCGTCAGGAGCCTTCCCGCTGCCCAGGCCGTCAAGGACGCCGTCCTCGCCCAGGCG
CCGGGGGCCAAGCTCGACGTCATGGAGCTCGACCTCTCGTCCATGGCCTCTGTCCGCGCT
TTCGCGTCCCAATTCATCGACAGGGGTCTCCCCCTCAACATCCTTATCAACAATGCAGGA
GTAATGGCAATACCTTTTGCGCTTTCAAAGGATGGAATTGAGATGCAGTTTGCAACTAAT
CATGTTGGGCATTTCCTGCTCACACACCTTCTATTGGATACCATGAAGAGGACCTCTCAT
GAATCAAATTTGGAAGGAAGAATTGTCAACGTGTCATCAGAGGGGCACAGACTTGCATAT
CGGGAAGGAATCCGTTTTGACAAGATCAACGATGAATCAGTGTATAGTAGCATTGGTGCA
TATGGGCAATCAAAGCTTGCAAACATATTGCATGCTAATGAACTTGCCAGGCGATTTGAG
GAAGATAATGTCAACATAACTGCAAATTCTCTTCATCCTGGTTCCATTATCACGAACCTT
CTTCGCTACCACAGTATCCTAGATGTTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAA
AATGCTGAGCAGGGTGCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGC
GTGTCCGGGAAGTACTTCTGCGACTGTAACCTGTACGAGCCAAGCGCGAACGCCAAGGAC
ATGGAGTTGGCCAAGAGGCTCTGGGACTTCGGCGTCGAGCTCATCACCTAG

Peptide Sequence

PEP ID

Zm00001d019754_P004
PEP Infomation

pep chromosome:B73_RefGen_v4:7:56516741:56522481:-1 gene:Zm00001d019754 transcript:Zm00001d019754_T004 gene_biotype:protein_coding transcript_biotype:protein_coding description:Short-chain dehydrogenase TIC 32 chloroplastic
Sequence

MAVRSLPAAQAVKDAVLAQAPGAKLDVMELDLSSMASVRAFASQFIDRGLPLNILINNAG
VMAIPFALSKDGIEMQFATNHVGHFLLTHLLLDTMKRTSHESNLEGRIVNVSSEGHRLAY
REGIRFDKINDESVYSSIGAYGQSKLANILHANELARRFEEDNVNITANSLHPGSIITNL
LRYHSILDVLHRTLGKLVLKNAEQGAATTCYLALHPHVKGVSGKYFCDCNLYEPSANAKD
MELAKRLWDFGVELIT

Transcript Sequence

Transcript ID

Zm00001d019754_T004
Transcript Infomation

cdna chromosome:B73_RefGen_v4:7:56516741:56522481:-1 gene:Zm00001d019754 gene_biotype:protein_coding transcript_biotype:protein_coding description:Short-chain dehydrogenase TIC 32 chloroplastic
Sequence

ATAGTATTTATTATTAGTAATCCAGCCCAATCCCATCCAGGGGCGTCCAGCGGCATCGGC
GCGGAGACGGCGCGAACGCTGGCGCTGCGCGGGGCCCACGTCATCATGGCCGTCAGGAGC
CTTCCCGCTGCCCAGGCCGTCAAGGACGCCGTCCTCGCCCAGGCGCCGGGGGCCAAGCTC
GACGTCATGGAGCTCGACCTCTCGTCCATGGCCTCTGTCCGCGCTTTCGCGTCCCAATTC
ATCGACAGGGGTCTCCCCCTCAACATCCTTATCAACAATGCAGGAGTAATGGCAATACCT
TTTGCGCTTTCAAAGGATGGAATTGAGATGCAGTTTGCAACTAATCATGTTGGGCATTTC
CTGCTCACACACCTTCTATTGGATACCATGAAGAGGACCTCTCATGAATCAAATTTGGAA
GGAAGAATTGTCAACGTGTCATCAGAGGGGCACAGACTTGCATATCGGGAAGGAATCCGT
TTTGACAAGATCAACGATGAATCAGTGTATAGTAGCATTGGTGCATATGGGCAATCAAAG
CTTGCAAACATATTGCATGCTAATGAACTTGCCAGGCGATTTGAGGAAGATAATGTCAAC
ATAACTGCAAATTCTCTTCATCCTGGTTCCATTATCACGAACCTTCTTCGCTACCACAGT
ATCCTAGATGTTCTCCATCGGACGCTGGGTAAATTGGTGTTGAAAAATGCTGAGCAGGGT
GCGGCAACTACATGCTATTTGGCACTCCACCCGCATGTGAAGGGCGTGTCCGGGAAGTAC
TTCTGCGACTGTAACCTGTACGAGCCAAGCGCGAACGCCAAGGACATGGAGTTGGCCAAG
AGGCTCTGGGACTTCGGCGTCGAGCTCATCACCTAGCTCATGCTTCTTGTTGTTAGCGAC
TTGTTTTCAGACATGGATGTAATGTAAATCCCTTGACAGATGGTAAATTCTGTAGGCCCT
CGAGGAGCTCCTGTGTGGTAAACTCATTCACCTCAATCTATCTACGTGTATTAAGGTGGA
TTAGGGTGTAAATTAAATTAATTTACACT