Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d019752_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:7:56251606:56254707:1 gene:Zm00001d019752 gene_biotype:protein_coding transcript_biotype:protein_coding description:hydroxyproline-rich glycoprotein family protein
Sequence

ATGCAGCAGCAGAATGATGACACGGTGCACGCCGCAGCCATCGTCTTGGCCGCCGCCGCG
AGATCCACCAGCACAGGCCTCCAGCGGCACCTCCAGCAGCTCGACGACCACGACCACGAC
CACGCCAACTGCGTCACTGAGAAGAAGACGAGATGGTGGTCGCGTCTGAAGGCCAAGCTC
AAGTCGTTCCGGCCGCACGGCCACCCCCAGCGCATCGCCGACGCGTCGCGGTCGCCGGAG
CCGCCGGGCGCACCATGCGCCGAGCAGGCGCCGGGCAGCTACAACTATGCGCGCCACGCG
CCCCAACCTACGCTGGCCTTCGTGGCGCCGCCGCCGTCGCCCGCCACGTCCGTGCTCACC
TCGGAGTCGCCGTCGCCCGTGGTGCTCCTCAACGCCAACGCCAGCAGCTACAGCTCGCCC
ACGGCCTCCATCTTCGCCATCGGCCCATACGCCAGGGAGCCGCAGCAGCTGGTGTCGCCG
CCGGCCTTTTCCGCGTCCGCGGGCCTCACCGAGCCGTCCACCGCGCCACTCACGCCCCCG
CCGGAGTCCAGCCTCCAACTGCTGGCCACCACGCCGTCGTCGCCGGAGGTCCCCTTCGCC
CAGTTCCTATGGTCTTCCGCTGCGGCAGACCAGCAGGCGCACTGCTCTGGCGGCGGCACC
GGCACCGGCACCGGCACGGCCAGCGACGGTTTCCTCCACGCCTACCAGCTGCAGCCGGGC
AGCCCCGTCCTCAAATCGCCGGGATCGACCTCCTCGTCGCCGCCACCATGGAACATGGAG
CAGCAGCACTGGGTGCCAAGGCACAGTGCTGGTGAGCGCGTCACCATCAAGGACGAATCA
ATTGATGATGGGGCGGCCACTGGCGGGGGCGAGTTTGTGTTCGGCAGTAACGCGGATGCG
GCGGCCGTTGATCGGTTTGCGGGTGGTGAGGTCGGCGGTGGCGGAACCCTGGCGTTGGGA
GACGCGACTGAGCAGTGGCCTTTCCTCCTTCCTTGCTCATACTCATAG

Peptide Sequence

PEP ID

Zm00001d019752_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:7:56251606:56254707:1 gene:Zm00001d019752 transcript:Zm00001d019752_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:hydroxyproline-rich glycoprotein family protein
Sequence

MQQQNDDTVHAAAIVLAAAARSTSTGLQRHLQQLDDHDHDHANCVTEKKTRWWSRLKAKL
KSFRPHGHPQRIADASRSPEPPGAPCAEQAPGSYNYARHAPQPTLAFVAPPPSPATSVLT
SESPSPVVLLNANASSYSSPTASIFAIGPYAREPQQLVSPPAFSASAGLTEPSTAPLTPP
PESSLQLLATTPSSPEVPFAQFLWSSAAADQQAHCSGGGTGTGTGTASDGFLHAYQLQPG
SPVLKSPGSTSSSPPPWNMEQQHWVPRHSAGERVTIKDESIDDGAATGGGEFVFGSNADA
AAVDRFAGGEVGGGGTLALGDATEQWPFLLPCSYS

Transcript Sequence

Transcript ID

Zm00001d019752_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:7:56251606:56254707:1 gene:Zm00001d019752 gene_biotype:protein_coding transcript_biotype:protein_coding description:hydroxyproline-rich glycoprotein family protein
Sequence

GACTGACCCGCACCGATGGAAGGGAAGGGAGTCAAACTTTGGTTTGAGTCGGATCGGAAT
CAGACCATCGGATGGATGAAATGGACGATGAGAGGAGCTGCCTCTGTGTTCCTGCCTTTC
CCGATCCCAACTCCCACGCTTGGCGTGACGCGCCTTTTCCTTTTCACCCATCTCTTCCTT
CCTCAATTCGTGCTCCAAATAAGCAACAAGCCGACCCAACGATTGATCAAGCAAAAAGCT
GCTTCTTCCATATGATCCACCACCGATCACTTCATAACTAGCCTCTTCTTTCCTTCAATT
CGTTCACGACACACAGCATATCCAATTAGGCAACAAGCTGATCCATCGATTGACCGAGCG
AGCAGGAAAAAAAAAGAGAAGAAGATGCAGCAGCAGAATGATGACACGGTGCACGCCGCA
GCCATCGTCTTGGCCGCCGCCGCGAGATCCACCAGCACAGGCCTCCAGCGGCACCTCCAG
CAGCTCGACGACCACGACCACGACCACGCCAACTGCGTCACTGAGAAGAAGACGAGATGG
TGGTCGCGTCTGAAGGCCAAGCTCAAGTCGTTCCGGCCGCACGGCCACCCCCAGCGCATC
GCCGACGCGTCGCGGTCGCCGGAGCCGCCGGGCGCACCATGCGCCGAGCAGGCGCCGGGC
AGCTACAACTATGCGCGCCACGCGCCCCAACCTACGCTGGCCTTCGTGGCGCCGCCGCCG
TCGCCCGCCACGTCCGTGCTCACCTCGGAGTCGCCGTCGCCCGTGGTGCTCCTCAACGCC
AACGCCAGCAGCTACAGCTCGCCCACGGCCTCCATCTTCGCCATCGGCCCATACGCCAGG
GAGCCGCAGCAGCTGGTGTCGCCGCCGGCCTTTTCCGCGTCCGCGGGCCTCACCGAGCCG
TCCACCGCGCCACTCACGCCCCCGCCGGAGTCCAGCCTCCAACTGCTGGCCACCACGCCG
TCGTCGCCGGAGGTCCCCTTCGCCCAGTTCCTATGGTCTTCCGCTGCGGCAGACCAGCAG
GCGCACTGCTCTGGCGGCGGCACCGGCACCGGCACCGGCACGGCCAGCGACGGTTTCCTC
CACGCCTACCAGCTGCAGCCGGGCAGCCCCGTCCTCAAATCGCCGGGATCGACCTCCTCG
TCGCCGCCACCATGGAACATGGAGCAGCAGCACTGGGTGCCAAGGCACAGTGCTGGTGAG
CGCGTCACCATCAAGGACGAATCAATTGATGATGGGGCGGCCACTGGCGGGGGCGAGTTT
GTGTTCGGCAGTAACGCGGATGCGGCGGCCGTTGATCGGTTTGCGGGTGGTGAGGTCGGC
GGTGGCGGAACCCTGGCGTTGGGAGACGCGACTGAGCAGTGGCCTTTCCTCCTTCCTTGC
TCATACTCATAGTTGACTGACTCCACTCCATACAGATTGCAAACTGATTGACATGTTATA
CTAGATTTACATGGTGCTGTCCTGGCTGGCCACGACTGAATTCGGCAGATATGATGTCCT
CGCCGGCAGCGCCCAGTATCGGCGGAAGCGCCCACTGGTTTCCGTTGATGTAGGAGAGGT
CCATGAATGGCGCGGCCTGGCGCTGGTCCAACTGCCTCGCGTACGCCACCCTCTGCGCGG
TGCCACCGCTGGCGCCGGGGCCCGTGCAGTCGTACTCGCCGAAGAACACGGACTGCTGCC
TGGCGGGGTCGTTCCAGTCGTTCCATCCCGCGGGCGCGACGACGGCGGAGAGGTACGTCC
TGGCGAAGACGACGGTAGCGTAGGGGCCCCACGCCCTACCCAGCCACACCTGCCCCGTGC
CCACGACGTTGCAGTCCACGAACGCCAAGCCCGTCCTCTCGGCGAGCGACGCACGCCCGT
GCGCCGTGACGCTCCCCGTGACGGTGCCGTTCGCGGCGGCGTTGGCGACGGAGCTGATGG
TGCAGCCGAGGTAGAGGGAGCGCGCGTTGCCGAAGATAAAGTCGATGGAGCCCTCGACGT
AGCAGCCGCGGAAGAAGTGGCGGCCCTGCTCGTCCAGCAGCGTGTCCTGGGAGCTGTAGA
AGCCGCACCAGTAGAAGGCGGCCTGGTCGCCCCGGACGCGCAGCGCCACCGCCTGGCCGC
CCGCGTCCCCCGGGTCGGCGGGGCGAGCCGTGTTCTGGACGCTGACGTTGTAGGCCACGA
AGTTGGCGGCGAGGACGGCGACGGTGGCGCTGTAGAAGGTGCCGCCGGTGGAGTTGGCGG
TGTCGTTCCAGACGATGGTCGTGTTGAGGTTGCCGCGGCCCTGCAGCGTGACGCCCGTCT
TGTTGCTCCACACCACCACCTTCTCCGCGTACACGCCCGCGTCGACGGCGATCAGCGTGC
GGGCCGCGGCGTAGTCGGGCACGGCGTCCACGGCCTTCTGCAGGCTGGTAAAGTTGGCGC
AGCCCGTGCGGTCGACGGTGAGGACCAGGCTGGCGTTGTGCAGGGACGCCATCTTGGCGA
CCCACCTGGCCTGGTCGTCGCACGCCCGGCGCCGGTGGTGGTGCCGCCCCACTTCCGCTT
CCGCTTCTTCTCCCGACCCGGAGGAGGTGCAGGGAGAAGAAGCAGGCTGCTGGAAGTAGA
ACGATGATCTGGAAGCGAGCAGGATGCCGAGAAGCGCAGAGCAGACGGCCGATGTTGCCC
ATAACAGCAATGGCGCCTTGGCACCAGCTCTGCCTGTGCTTCTTGTACGAAAATGCCTCC
TCATTGTCCTTTCCCTTCTTCGATCAGTTTCAGTTTTAGTACACTGAGGTTAGCTGCTGA
GCAGATCGAGCTTGTGTTCTTCTGTATCATACTGTTGTAGTAGTACGTGTTAACCATCGC
CAGTGGATTTGGCTGCACTACCTTGCGGCCTGCGCTCGTGATGGTGACCCATCAGCCATG
CGTAACGTAATGTGAGTGCAAAGCAAAATAGA