Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d019703_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:7:52140538:52181214:-1 gene:Zm00001d019703 gene_biotype:protein_coding transcript_biotype:protein_coding description:Na+/H+ antiporter%2C probable CP0838

Sequence

ATGGCGCTCTCCTGTTACTTGCTCGCCGGCGCCCGGGCGGCAGCCTCCCCTTCCTTCTCA
TCCTCCGCTGCCATCCGCCGGCGGGACCACCGTCTGCTGACCTTGTCCGTGGTTCCGCTT
TCGCTCTCTCAGCGATGTCGCCACGGCCTCCGCGTGTGCTGCGCCTCCTCCACCTCTTCC
TCATCTCCGCCGCCGGCAACTCCCGAGGAGCCCGACGACTACGAGTTATTGGACACAGCT
GGGAATTGTGACCCTCTATGCTCGGCTGATGAAGTTAGCTCACAATACTTTGAAGCTAAC
TACAAACCAAAAAATGACCTTCTAAAAGCTTTAACTATCATTGGCACAGCCTTGACTGGA
GCAGCCGCAATAAACCATTCCTGGGTTGCTGCTAATCAGGACATTGCAATGGTGTTGGTT
TTTGCTATTGGCTATGCAGGTATCGTTTTTGAGGAATCACTAGCATTTAACAAAAGTGGA
GTTGCGTTATTGATGGCTGTCTGCCTATGGGTTATCAGAGGCATTGGGGCTCCCTCGACT
GATGTAGCTGTTCAAGAGTTGAGCCAGTCAACTTCTGAAGTTAGTGAAATTGTGTTTTTC
TTGCTTGGTGCAATGACTATTGTGGAAATTGTTGATGCACATCAAGGTTTTAAGCTGGTG
ACTGATAATATATCTACTCGAAACCCAAAAACTCTTCTGTGGGTGATTGGTATTGTAACT
TTCTTCCTGAGTTCGATCCTCGACAACCTGACTTCCACTATTGTGATGGTATCCTTGCTT
CGAAAACTAGTACCTCCATCAGAATATAGAAAATTGTTAGGTGCTGTTGTTGTAATAGCA
GCGAATGCTGGCGGTGCATGGACACCAATTGGTGATGTGACAACCACTATGTTGTGGATT
CATGGTCAGATTACAACATTGAAAATAATGCAGGGCTTGTTTATTCCCTCCACTGTTTCG
TTGGCTGTCCCACTGGCTCTGATGTCCCTCACCAGTGAAGCAAATGGGTCATCTGAGAAA
TCTTCCAGCTTGCTGTCATCAGAGCAGGTGGCTCCTCGGGGACAACTTGTACTAGGTGTT
GGAATTGGAGCATTAATGTTTGTTCCAGTCTTTAAAGCTCTCACTGGTCTGCCACCTTTC
ATGGGTATGCTACTTGGTCTTGGGATTCTCTGGATCCTGACAGATGCAATACATTACGGA
GACTCTGAAAGGCAGCGGCTGAAAGTTCCACAAGCACTATCACGGATTGATACACAAGGA
ATTTTATTCTTCTTAGGTATTCTTTTATCAGTTGGCAGCTTGGAATCTGCAGGGATTTTG
AGGCAGTTAGCAAATTATCTTGATGCCAATATTCCAAATGCTGATCTTATTGCTAGTGCA
ATTGGTGTGGCATCAGCAATTATAGACAATGTTCCACTTGTTGCTGCAACCATGGGGATG
TATGACCTGACTTCGTTCCCTCAAGACTCGGACTTCTGGCAGCTTGTTGCATTCTGTGCG
GGTACTGGTGGTTCAATGCTTATCATTGGCTCCGCAGCAGGAGTTGCTTTTATGGGAGTG
GAGAAGGTGGATTTCTTTTGGTATTTTCGCAAGGTGAGCGGTTTTGCCTTTGCAGGTTAT
GCAGCTGGTATAATCTCTTACCTTGCTGTTCAAAATCTCCATCTATCCCTTCCCACGTCG
CTGGTTGAGATCCCTTTTATTTCGGGATCATAA

Peptide Sequence

PEP ID

Zm00001d019703_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:7:52140538:52181214:-1 gene:Zm00001d019703 transcript:Zm00001d019703_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Na+/H+ antiporter%2C probable CP0838

Sequence

MALSCYLLAGARAAASPSFSSSAAIRRRDHRLLTLSVVPLSLSQRCRHGLRVCCASSTSS
SSPPPATPEEPDDYELLDTAGNCDPLCSADEVSSQYFEANYKPKNDLLKALTIIGTALTG
AAAINHSWVAANQDIAMVLVFAIGYAGIVFEESLAFNKSGVALLMAVCLWVIRGIGAPST
DVAVQELSQSTSEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNISTRNPKTLLWVIGIVT
FFLSSILDNLTSTIVMVSLLRKLVPPSEYRKLLGAVVVIAANAGGAWTPIGDVTTTMLWI
HGQITTLKIMQGLFIPSTVSLAVPLALMSLTSEANGSSEKSSSLLSSEQVAPRGQLVLGV
GIGALMFVPVFKALTGLPPFMGMLLGLGILWILTDAIHYGDSERQRLKVPQALSRIDTQG
ILFFLGILLSVGSLESAGILRQLANYLDANIPNADLIASAIGVASAIIDNVPLVAATMGM
YDLTSFPQDSDFWQLVAFCAGTGGSMLIIGSAAGVAFMGVEKVDFFWYFRKVSGFAFAGY
AAGIISYLAVQNLHLSLPTSLVEIPFISGS

Transcript Sequence

Transcript ID

Zm00001d019703_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:7:52140538:52181214:-1 gene:Zm00001d019703 gene_biotype:protein_coding transcript_biotype:protein_coding description:Na+/H+ antiporter%2C probable CP0838

Sequence

TATTCCTATTCGAGTGAAAGCGGCCCCCAATTTCTACTGTAAGCAGCAATGGCGCTCTCC
TGTTACTTGCTCGCCGGCGCCCGGGCGGCAGCCTCCCCTTCCTTCTCATCCTCCGCTGCC
ATCCGCCGGCGGGACCACCGTCTGCTGACCTTGTCCGTGGTTCCGCTTTCGCTCTCTCAG
CGATGTCGCCACGGCCTCCGCGTGTGCTGCGCCTCCTCCACCTCTTCCTCATCTCCGCCG
CCGGCAACTCCCGAGGAGCCCGACGACTACGAGTTATTGGACACAGCTGGGAATTGTGAC
CCTCTATGCTCGGCTGATGAAGTTAGCTCACAATACTTTGAAGCTAACTACAAACCAAAA
AATGACCTTCTAAAAGCTTTAACTATCATTGGCACAGCCTTGACTGGAGCAGCCGCAATA
AACCATTCCTGGGTTGCTGCTAATCAGGACATTGCAATGGTGTTGGTTTTTGCTATTGGC
TATGCAGGTATCGTTTTTGAGGAATCACTAGCATTTAACAAAAGTGGAGTTGCGTTATTG
ATGGCTGTCTGCCTATGGGTTATCAGAGGCATTGGGGCTCCCTCGACTGATGTAGCTGTT
CAAGAGTTGAGCCAGTCAACTTCTGAAGTTAGTGAAATTGTGTTTTTCTTGCTTGGTGCA
ATGACTATTGTGGAAATTGTTGATGCACATCAAGGTTTTAAGCTGGTGACTGATAATATA
TCTACTCGAAACCCAAAAACTCTTCTGTGGGTGATTGGTATTGTAACTTTCTTCCTGAGT
TCGATCCTCGACAACCTGACTTCCACTATTGTGATGGTATCCTTGCTTCGAAAACTAGTA
CCTCCATCAGAATATAGAAAATTGTTAGGTGCTGTTGTTGTAATAGCAGCGAATGCTGGC
GGTGCATGGACACCAATTGGTGATGTGACAACCACTATGTTGTGGATTCATGGTCAGATT
ACAACATTGAAAATAATGCAGGGCTTGTTTATTCCCTCCACTGTTTCGTTGGCTGTCCCA
CTGGCTCTGATGTCCCTCACCAGTGAAGCAAATGGGTCATCTGAGAAATCTTCCAGCTTG
CTGTCATCAGAGCAGGTGGCTCCTCGGGGACAACTTGTACTAGGTGTTGGAATTGGAGCA
TTAATGTTTGTTCCAGTCTTTAAAGCTCTCACTGGTCTGCCACCTTTCATGGGTATGCTA
CTTGGTCTTGGGATTCTCTGGATCCTGACAGATGCAATACATTACGGAGACTCTGAAAGG
CAGCGGCTGAAAGTTCCACAAGCACTATCACGGATTGATACACAAGGAATTTTATTCTTC
TTAGGTATTCTTTTATCAGTTGGCAGCTTGGAATCTGCAGGGATTTTGAGGCAGTTAGCA
AATTATCTTGATGCCAATATTCCAAATGCTGATCTTATTGCTAGTGCAATTGGTGTGGCA
TCAGCAATTATAGACAATGTTCCACTTGTTGCTGCAACCATGGGGATGTATGACCTGACT
TCGTTCCCTCAAGACTCGGACTTCTGGCAGCTTGTTGCATTCTGTGCGGGTACTGGTGGT
TCAATGCTTATCATTGGCTCCGCAGCAGGAGTTGCTTTTATGGGAGTGGAGAAGGTGGAT
TTCTTTTGGTATTTTCGCAAGGTGAGCGGTTTTGCCTTTGCAGGTTATGCAGCTGGTATA
ATCTCTTACCTTGCTGTTCAAAATCTCCATCTATCCCTTCCCACGTCGCTGGTTGAGATC
CCTTTTATTTCGGGATCATAAAAGCTTGGCCTTTGTGGTCATTTTAGAATGATCACACTC
TACATATGGAGGTGAACATCATTATTGTTTCCATATCTTATGTAAGGTCCAGTGTGTCGG
CATGTAGAGTATTCAGAATTTGGGGGATAAGACAGCCCTGAGCTTCAAGGCCAGACATCA
GTTTTGGACAGGCTTATCTCGTGCTGATGAACTTTAGGGTAGGGTTGAGCTCCTTACTAG
GGGGCTGTTTGGTTCGTGGCTAAATATGCCACACTTTGCCTAAGGTTAGTCGTTCGAATT
GAAGAATTAACCTTAGGCAAAAAAGTTAAGCAAAGTGTGGCAAGTTAGACATCAAACCAA
ACAAGCCCTAGAACTGTGGGTTCGAACCAAAGTATGCCACTCTGGATATTTGTGAACCTA
CTCGGCAAACAAAGGAGCAACTTAGAAATGTGCAATTTTGTAAGAAACAATCCCTTGTAA
GCTAAGAGTGTAATAAGATACAGAAATCTTGTATAACTGCTGTCTGGTAATCTCATTGAT
GGTCTTGTTAGGCAGCTGCATAGTTCAAAACTTCATACCACATCACTAGGGATGAGTTTT
GCATCTGACATGGATACCTGGTTGAACAAGCGGCAACAGGGGCT