Gene sequences

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SNP Detection
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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d019542_T020
CDS Infomation	cds chromosome:B73_RefGen_v4:7:41594827:41601323:-1 gene:Zm00001d019542 gene_biotype:protein_coding transcript_biotype:protein_coding description:COP1-interacting protein-related
Sequence	ATGTCTACACGCTCTGAATTTCCTCCATTTAACGCATCTGGCATTGTGTTCATGGGAGAC AACATGAAGCCAAACTTGGAATCAGGCTCCATTAATGGAGAGGCAAATGGCGAGGATGGA GCTAAAGCTGATCAGAAGTCCAGCCAGCAGATGGGATCTCATGCTGCATATCCTCCATGG GCAATGCATCCTCCATCTGGTGCAGTTGTTTACCCACCTTATCCTATGCAAGGCATGCCT TTTTATCCTGGGGTGAATCCATACTACCCTCCATATCCTCCAGTGGATGATCCCAGGTAC CACTACTCAGGAAGGAAATCTTCGAGGAAGCACTCCTCGGATAGTAAGGACTCAGAAACT CTTGACGTTGAAAGTGACCATTGCAGTTCAGATAGAGGAAGTTCTCATGGTCGCAAGTCA CATAGAAAGGGGAAGAGGTCCGGAAAGAAAAAACCTAGTGTGGTTGTTATCAAGAATGTG AATGTAACATCTAAAAAGCATGGCTCATCAGAGAGCGAATCACAATCAAGTTCTGAAGTT GAGTCTGCGGACAGTGACAATTCACACTCCAAATCAAGTGAAAGGAAGCATAAAAGCTCA AGTTCAAAGAAAAAGGAGGGTAGGAGAACTACTTTTGCCTCCGGAGATGAATATAGCAAG GATGAAATGTCAAATGGCCACGATGCTGAGCAAGGAAACTGGAGCGCATTCCAAAATTTC TTGTTGAGAGCAGAAGAAAAAACAAGATCTAGTGATGCAGACCTGTTTGCTGGTGAGAAA GAACCCCCATCAAGGAGAAAACAGAATGTAAACACAGCAGATCCTATTCTTTTAGCTGAG AGAGATGGTGGCATTGTCCATGAGCGGAACATAGTAGGTTTTGATTCAGCCAATGGGAGG ACTAGAGCTATCCGGGTCATGTCCAATGATGAACTTGTTATGTCTGGAGAAGGGAGGAAC TATATGCATAGTGAAATAAAGGAGATTGAAGCTGGTGGAGGAAGGTACAGGAGAGGGACA GGTGATGACTACATGGTTTATGGTCAGGGAAGTCAGATAGCCAGACATAGTTTGTTGGAT CCTCTTGCAGAGGCCCAGTACAAGAATCCTGTTCAGCAGGACAAGAATAGGAATGGTGTG GCGGACGAGTCCTTTATGATCCCTCTTAGGTCCAGCTTACATGATAATATCGGAGCAGAA AGCAGAACTACTATTGACATAGATGTTGAGCTTCCTTCTAGAATTCATAAAGCATCAGAT GAAAAGGCTGGACATCAGCTTTTTTACGAACCTGACGAATTGGTGCCAGAGCGTGGATCT GAAGATGTTTCATTTGGATATGATCCAGCAATGGATTATGATAGCCACATGCAGACTACT GTGAAGGTGGAAGATGAAAAAACAGAGGATGACTTGCCAGTTGCTGACAATGATGTACAG AAGGTAGAGAAAGAGAAGCTAAGGAATGCAAAGGATGGTTCAGATAAACGAAGGAAAGAT GCCTTATTGAGGAGGTTATCGGCGCCAAGGACCCCACTGAATGATGCACAAAAACGTGCA CAGAACCTGCGTGCATATAAGGCAGACCTTCAGAAACTGAAGAAAGAACAGGATAGTGAA TGTTTGTGTTTTTAG

Peptide Sequence

PEP ID	Zm00001d019542_P020
PEP Infomation	pep chromosome:B73_RefGen_v4:7:41594827:41601323:-1 gene:Zm00001d019542 transcript:Zm00001d019542_T020 gene_biotype:protein_coding transcript_biotype:protein_coding description:COP1-interacting protein-related
Sequence	MSTRSEFPPFNASGIVFMGDNMKPNLESGSINGEANGEDGAKADQKSSQQMGSHAAYPPW AMHPPSGAVVYPPYPMQGMPFYPGVNPYYPPYPPVDDPRYHYSGRKSSRKHSSDSKDSET LDVESDHCSSDRGSSHGRKSHRKGKRSGKKKPSVVVIKNVNVTSKKHGSSESESQSSSEV ESADSDNSHSKSSERKHKSSSSKKKEGRRTTFASGDEYSKDEMSNGHDAEQGNWSAFQNF LLRAEEKTRSSDADLFAGEKEPPSRRKQNVNTADPILLAERDGGIVHERNIVGFDSANGR TRAIRVMSNDELVMSGEGRNYMHSEIKEIEAGGGRYRRGTGDDYMVYGQGSQIARHSLLD PLAEAQYKNPVQQDKNRNGVADESFMIPLRSSLHDNIGAESRTTIDIDVELPSRIHKASD EKAGHQLFYEPDELVPERGSEDVSFGYDPAMDYDSHMQTTVKVEDEKTEDDLPVADNDVQ KVEKEKLRNAKDGSDKRRKDALLRRLSAPRTPLNDAQKRAQNLRAYKADLQKLKKEQDSE CLCF

Transcript Sequence

Transcript ID	Zm00001d019542_T020
Transcript Infomation	cdna chromosome:B73_RefGen_v4:7:41594827:41601323:-1 gene:Zm00001d019542 gene_biotype:protein_coding transcript_biotype:protein_coding description:COP1-interacting protein-related
Sequence	CTTTTTCCCCAGTGGGGAGGTTAGCACCCGGCACAAGCAAAGCGCCGGGTTCTTGTCGCA GTTTCTGCGCGCTCGCTCGCTTTTTGCCCGTAAGATCTGATACAAAGAGGAGAGGGAGAG CCAAGAGAGGAGAGGTTCTCGTGTGGAATTCTTCGGCGATGAGGTCCGACGCCCGTCTGG ATTCGGTGGTCTTCCAGCTCACCCCCACCCGGACCAGGTTCGATTTGGTTCTGATAGCGA ATGGCCGGAAGGAGAAGTTTGCATCTGGTTTGCTGAAACCGTTCGTCGCTCACTTGAAGG CCGCCCAGGATCAGATTGCCAAGGGAGGGTACTCGATCACACTTGAACCAAGCTCAGGGT TCGATGTGCCATGGTTTACGAGAGGCACCGTGGAGAGATTTGTGCGTTTCGTGAGTACTC CGGAGGTCCTTGAGCGAGTCAGAACACTGGAGTCTGAGATCCTGCAGCTCGAGGATGCCA TTGCTATCCAGAGCAACGATAGTCTTGGATTAAAATCTGTCGAAGACCATGGAAGAAAGT TGACTGAAAGCAATGGAGGTAGTATGACACCGCACCAACCTGATTGCTTTCTGTGAGCAT GTTGCATAGAATAGTGCATGCCTTTGAGGATTGTCTAAATCTCAAACATTATTTCGTTGG CCTACCAAAAAGAAAAGCAAGGTGCAATCCACTATGATTATTTTAGAATCTACTCATCAT GGAGTTTGATGCAACATCACATCAAGGGCCATTATTAAGTTGGCACTTATCATTTTAATT CCCAAAATGTTAGAATCTAACCATCATGGAGTTTGATGCGACATCCACTATGATTTGTGG ACAAGCTTTACTATCGTCTAATGTTATGAAGCAAGTATGTTGAATTTGCAGTGTGATCAA AATAACTTAGATATATAGCTATATTATTTTTGAAGTCCTGAATATTTAGTAATATCTTAT TTCCAACTGGAGAATTCTGGATGGTATTATGTTCTGCATTCAGGGGAGGACTGGAATGGA TCGAGCTGTTTCTTCCTTTTATTTGCCTTACCTGTCACAGCCTGCCATATCTTTTTATTT ATTTCTGCAACATGCCTGACACTGTCCATCAACTAATAGGTGGACGTGCAAATTATGATC CTGATTCAGCCACAGCAATTGTTGTCTACAAGCCTGGATCAAATCCAACGCCACAAATTC AGAATGAAACAGCAGCACATGAGGAGAATTCAAAAGTTCAATTGCTCAGAGTGCTTGAAA CCCGCAAAACTATGTTAAGAAAAGAGCAGGCTATGGCTTTCGCTCGTGCTGTAGCTGCTG GGTTTGACATTGACAACTTGGGTTACTTGATCGCATTTGCAGAGCGCTTTGGTGCTGCAC GTCTGATGTAAGTATAGCCTTACCATTACTTGCTGGTTTTATATGCTGGATTAAACTAGT TGTCTTGATATCTTCTGTGTTTAAGTTGTAACTTGACCTTAGAGCTGCTACCCATGAAGA TTGTATCATCTGTCACTTTTACTCTAGCATGTCATGAAATCACAAGTGTGGAACTCCTGG ATAGTCAGATGTTTTGGTTTGTTTCTATGTGAACAACTGTACTATTGCACTCTTTGCCTT GGTGGTGTTATTGAACTTTGTTGATCAAGTTATAATATTGCACAAGTTTTAGTCAGTTGT TTGTCATCAACTCATCGAACTAATAACATTTTGTCAATAGATCTTACATCTTTGGGAAAA TATCCTATGCAATCACTTATCCTGGTGCAAGCATGCAATCAAGCGATTTGGTGCATCCGA TCTAGATCTAATGATGACTGTTATTTTATATTTAACCCCTTCCACCTAAAACATAGTACC TATTTTACTTTTAACCCCTTCCATATGAAACCGTTGGATCTAGATTGGATGCTCTGGATA GTTTGATTGCACGCTTGCACCAAAATGAGTGATTGCACAGGATATGTTGTCTACATCTTT AACTCCCTCAAATTCACTAATTGAACAGGAAGGCATGTTCACATTTCATCGAACTGTGGA AGCAGAAGCATGAAACTGGACAATGGATTGAAGTTGAACCTGAAGCAATGTCTACACGCT CTGAATTTCCTCCATTTAACGCATCTGGCATTGTGTTCATGGGAGACAACATGAAGCCAA ACTTGGAATCAGGCTCCATTAATGGAGAGGCAAATGGCGAGGATGGAGCTAAAGCTGATC AGAAGTCCAGCCAGCAGATGGGATCTCATGCTGCATATCCTCCATGGGCAATGCATCCTC CATCTGGTGCAGTTGTTTACCCACCTTATCCTATGCAAGGCATGCCTTTTTATCCTGGGG TGAATCCATACTACCCTCCATATCCTCCAGTGGATGATCCCAGGTACCACTACTCAGGAA GGAAATCTTCGAGGAAGCACTCCTCGGATAGTAAGGACTCAGAAACTCTTGACGTTGAAA GTGACCATTGCAGTTCAGATAGAGGAAGTTCTCATGGTCGCAAGTCACATAGAAAGGGGA AGAGGTCCGGAAAGAAAAAACCTAGTGTGGTTGTTATCAAGAATGTGAATGTAACATCTA AAAAGCATGGCTCATCAGAGAGCGAATCACAATCAAGTTCTGAAGTTGAGTCTGCGGACA GTGACAATTCACACTCCAAATCAAGTGAAAGGAAGCATAAAAGCTCAAGTTCAAAGAAAA AGGAGGGTAGGAGAACTACTTTTGCCTCCGGAGATGAATATAGCAAGGATGAAATGTCAA ATGGCCACGATGCTGAGCAAGGAAACTGGAGCGCATTCCAAAATTTCTTGTTGAGAGCAG AAGAAAAAACAAGATCTAGTGATGCAGACCTGTTTGCTGGTGAGAAAGAACCCCCATCAA GGAGAAAACAGAATGTAAACACAGCAGATCCTATTCTTTTAGCTGAGAGAGATGGTGGCA TTGTCCATGAGCGGAACATAGTAGGTTTTGATTCAGCCAATGGGAGGACTAGAGCTATCC GGGTCATGTCCAATGATGAACTTGTTATGTCTGGAGAAGGGAGGAACTATATGCATAGTG AAATAAAGGAGATTGAAGCTGGTGGAGGAAGGTACAGGAGAGGGACAGGTGATGACTACA TGGTTTATGGTCAGGGAAGTCAGATAGCCAGACATAGTTTGTTGGATCCTCTTGCAGAGG CCCAGTACAAGAATCCTGTTCAGCAGGACAAGAATAGGAATGGTGTGGCGGACGAGTCCT TTATGATCCCTCTTAGGTCCAGCTTACATGATAATATCGGAGCAGAAAGCAGAACTACTA TTGACATAGATGTTGAGCTTCCTTCTAGAATTCATAAAGCATCAGATGAAAAGGCTGGAC ATCAGCTTTTTTACGAACCTGACGAATTGGTGCCAGAGCGTGGATCTGAAGATGTTTCAT TTGGATATGATCCAGCAATGGATTATGATAGCCACATGCAGACTACTGTGAAGGTGGAAG ATGAAAAAACAGAGGATGACTTGCCAGTTGCTGACAATGATGTACAGAAGGTAGAGAAAG AGAAGCTAAGGAATGCAAAGGATGGTTCAGATAAACGAAGGAAAGATGCCTTATTGAGGA GGTTATCGGCGCCAAGGACCCCACTGAATGATGCACAAAAACGTGCACAGAACCTGCGTG CATATAAGGCAGACCTTCAGAAACTGAAGAAAGAACAGGATAGTGAATGTTTGTGTTTTT AGTCAGTAGTCTTGGGTTCCATTTCTAGCCTACGCCATCTTGCTTGGGATAATAGGCTTT ATTGTTTTGTGATCACCCTTTCAAATGGTCAACTAGCTAAGTTTAAACACAATTCAGTAC AGTCCTTGTAAGGCAGAATTTCAAACAGTTAACCTCAGTAGTTTTCCCTATTTCAGAAAT CTTATAAGTTTTACTTATAATATACTCCACATCCAGAAAAAAGAGAGGATATATATTTTA CTCCGTAACTTTGTATTACATTTACTTTTTTACTATTTAATATGATAATCTGCCTACTTG ATGATTTAATTGTTGAGAAAAGCTTAAGAAAACCAAGCACACAATTACTTTCCCACACAT TAATTTTCAGCTGAGCGTGTCAGACATTGTTTCATTCTTATGGCATGTTTCTAATTCTGA TTGACAAACTGTACAATGAGTCATCTTTGTAGCTGAATGGCTAGTAACTTTTAATATTTT CAGGAAGAAGAGCAAATAAAGCGATTGGAGAGGCTCAAATTGGAGCGGCAAAAGAGGATC GCCGCAAGAGGTAATGGAAAGGGTCCAGGGAATGGTTCTCCTAAAGCGAATGGTACGAAT GGACTCAGTAAATCAGTTCCAACCTTCACTGGGTTGAAAAAGGAGAAAAATGGAACAACT GAATCACTCAGCGATCGACTGAAGAGGCTTTCTGAACCCAAAAGCATTGCTGGGGCAGAG CATTCCTTGAATCCAAAGTCAACTGGCGCAGACCATTCACGAAGAAGAAGCATGGCGTGA GACGGAGAACCGAGCATCTTGAATCCATCGTACCACTCGCTAGCTCAGCAACCATGAATG GCATATCAAAAGGCTTCTTGTACAGAAAGAGGAAATGGCTGGCGCTGTAGCACTGCCTGC TTCCAAGATTTGTGATGGAAAATCAAGTTACCTTTTCAATGGCATGGCGTTGTACTTCCA ATTTTAACATAATTATTTCATTCTTTTATTGAGGATGGCTTGTAATAGCTGTAAACCTGG ATTTTTCGGCGACGCGGAGCTATATTTTGGTTTTTGGCTGTATTTATGGAATGGATTGAT CGTTGTTT