Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d019397_T008
CDS Infomation

cds chromosome:B73_RefGen_v4:7:31782324:31804613:1 gene:Zm00001d019397 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide repeat (TPR)-like superfamily protein
Sequence

ATGTATTCAGTTTTCGATGCTTTGCTGCCAATGGGCGTGGCTTCAGTGCGGATTCTACCA
ATAAGAGAAAAATTAAAAGCAAGAAGAGGCGAAAGGATGTTGCACTGGAATCAAGGGGTG
CCAGAATTAAGAACTGAAAGTGAAAACAAATCTGGTAAAAAAGTCATGGATAAGAAATTT
TTGGAAAAAGTGGAAGCGGTTCGAAGGTCTGCTCTTGAGAAAAAGAAAGCTGAAGAGAAC
AAAGATTATCAAGCTATTGATTATGATGCTCCAATTGAGTCAGATAAAAGTACTATTGGC
TTTGGTACTAGGGTTGGAATTGGTGTTGCAGTTGTTATATTTGGACTAGTCTTCGCTTTT
GGGGATTTCCTGCCTTATGGAAGTGTTAGCCCTAGCAAAGAAAGTGCAGTAGTTAAACAA
AAGCTTTCTCAAGAGGAAGAAGAAAAATTTAAGAATGCACTGCAAGGCTTTCAAGCAACG
CTGAGTAAGTCGCCTAATGATCCTACTGCTCTTGAGGGTGCAGCAGTATCGTTGTCCGAA
CTAGGTGAGTATGAGAAGGCATCAACATTCCTTGAGAAGCTAATTAAGGTAATCCCTGAT
AAAGCAGAAGCATACCGTTTGCTTGGTGAAGTAAAGTTTGAACTCAAGGATTATGAAGGG
AGTTCATCATCATACAGAAGTGCTTTATCTGTGAGTAAATCTTCATCAGATAATATTGAT
TTTGAAGTTCTCCGTGGACTGACAAATTCATTACTTGCTGCTAAGAAGCCAGATGAGGCA
GTTGATATAATTCTGTTATGCCGTCGAAAGTTGAATGAAAAGAGTCAAACAGGACTAGCA
GATTTGGAGGCTACAAATGACAATGGTCGCCAAAAGCCTCAAGATATTGACCCGATCCAA
GTTGACCTGCTTTTAGGGAAGGCTTATTCCGATTGGGGTCATATCAGTGATGCTATTTCT
GTCTACGATAAGCTAATAACTGATCATCCTGAAGACTTCCGTGGTTATTTAGCAAAGGGA
ATCATATTAAAGGAAAATGGTAAAGCAGGTGATGCAGAAAGAATGTTTATTCAGGCAAAA
TTCTTCGCCCCGGAGGCAGCGAAGGCACTAGTTGATCGCTATGCGCAAAGATAG

Peptide Sequence

PEP ID

Zm00001d019397_P008
PEP Infomation

pep chromosome:B73_RefGen_v4:7:31782324:31804613:1 gene:Zm00001d019397 transcript:Zm00001d019397_T008 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide repeat (TPR)-like superfamily protein
Sequence

MYSVFDALLPMGVASVRILPIREKLKARRGERMLHWNQGVPELRTESENKSGKKVMDKKF
LEKVEAVRRSALEKKKAEENKDYQAIDYDAPIESDKSTIGFGTRVGIGVAVVIFGLVFAF
GDFLPYGSVSPSKESAVVKQKLSQEEEEKFKNALQGFQATLSKSPNDPTALEGAAVSLSE
LGEYEKASTFLEKLIKVIPDKAEAYRLLGEVKFELKDYEGSSSSYRSALSVSKSSSDNID
FEVLRGLTNSLLAAKKPDEAVDIILLCRRKLNEKSQTGLADLEATNDNGRQKPQDIDPIQ
VDLLLGKAYSDWGHISDAISVYDKLITDHPEDFRGYLAKGIILKENGKAGDAERMFIQAK
FFAPEAAKALVDRYAQR

Transcript Sequence

Transcript ID

Zm00001d019397_T008
Transcript Infomation

cdna chromosome:B73_RefGen_v4:7:31782324:31804613:1 gene:Zm00001d019397 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide repeat (TPR)-like superfamily protein
Sequence

AGGCGGGGGGCTACTGCCGCCGCCTAACGCCAGGTTCCGAGGCCTTCGTCGGTCTATTTG
CCGGCGATGAACATCCACCAGGGATGGTTGCAACAATTTGGGCATAGCGTTGGTATCAGT
GGTTCGAAGATGGTTCTCCATATGACCCACAATGTATTCAGTTTTCGATGCTTTGCTGCC
AATGGGCGTGGCTTCAGTGCGGATTCTACCAATAAGAGAAAAATTAAAAGCAAGAAGAGG
CGAAAGGATGTTGCACTGGAATCAAGGGGTGCCAGAATTAAGAACTGAAAGTGAAAACAA
ATCTGGTAAAAAAGTCATGGATAAGAAATTTTTGGAAAAAGTGGAAGCGGTTCGAAGGTC
TGCTCTTGAGAAAAAGAAAGCTGAAGAGAACAAAGATTATCAAGCTATTGATTATGATGC
TCCAATTGAGTCAGATAAAAGTACTATTGGCTTTGGTACTAGGGTTGGAATTGGTGTTGC
AGTTGTTATATTTGGACTAGTCTTCGCTTTTGGGGATTTCCTGCCTTATGGAAGTGTTAG
CCCTAGCAAAGAAAGTGCAGTAGTTAAACAAAAGCTTTCTCAAGAGGAAGAAGAAAAATT
TAAGAATGCACTGCAAGGCTTTCAAGCAACGCTGAGTAAGTCGCCTAATGATCCTACTGC
TCTTGAGGGTGCAGCAGTATCGTTGTCCGAACTAGGTGAGTATGAGAAGGCATCAACATT
CCTTGAGAAGCTAATTAAGGTAATCCCTGATAAAGCAGAAGCATACCGTTTGCTTGGTGA
AGTAAAGTTTGAACTCAAGGATTATGAAGGGAGTTCATCATCATACAGAAGTGCTTTATC
TGTGAGTAAATCTTCATCAGATAATATTGATTTTGAAGTTCTCCGTGGACTGACAAATTC
ATTACTTGCTGCTAAGAAGCCAGATGAGGCAGTTGATATAATTCTGTTATGCCGTCGAAA
GTTGAATGAAAAGAGTCAAACAGGACTAGCAGATTTGGAGGCTACAAATGACAATGGTCG
CCAAAAGCCTCAAGATATTGACCCGATCCAAGTTGACCTGCTTTTAGGGAAGGCTTATTC
CGATTGGGGTCATATCAGTGATGCTATTTCTGTCTACGATAAGCTAATAACTGATCATCC
TGAAGACTTCCGTGGTTATTTAGCAAAGGGAATCATATTAAAGGAAAATGGTAAAGCAGG
TGATGCAGAAAGAATGTTTATTCAGGCAAAATTCTTCGCCCCGGAGGCAGCGAAGGCACT
AGTTGATCGCTATGCGCAAAGATAGTCGATAAGAGATTGAATGGTGTTGTTTTAAACCAA
TGAGATCATTCGGATTCCAGAAAAACGATCAACATGTTTGGAACGTCTTGTATGATAGCA
ACATTATGGGATCTGGGACATTTTGAATTGTATTGTTTTAGAACAGGCCTGACGCAGTAT
CGAAAAAAGCCTTCCCACTGAGACAAGAGATTCTGGGTTCGACAGTCTCTGAAAAAATGC
AGGGCAAGCCCTGCCCTTGGTTATTCCTTCTTTCTGAAAAAAATGCAGGGTAAGCCTTGC
CCTTGGTTATTCCTTCTCTCTGAAAAAATGCTGGGTAAGCCTTGCCCTGGGTTATTCCTT
GCTCAGACCTCGCTCACGCGGAAGCCGCCAGCAGCCCTTTTATTGCTTTAGAACAGCAGA
AATGAAACATGTATGCTTTGCCTGGGAACAATGCTCAGTTAAACATTTTGATATACGTGT
TTAGTCCATTATATAAAAAATTATTTCGATGTGTTGG