Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d019106_T016
CDS Infomation

cds chromosome:B73_RefGen_v4:7:16900065:16907269:1 gene:Zm00001d019106 gene_biotype:protein_coding transcript_biotype:protein_coding description:Coatomer subunit gamma

Sequence

ATGGTGTACCTCATGATCAAGGAACTCTCACCTTCAGCCGATGAGGTCATCATAGTAACA
AGCTCTTTGATGAAGGACATGAATAGCAAAACTGATATGTACCGTGCAAATGCTATTAGA
GTTCTTTGTCGTATTATTGACTCAACCCTTCTCACCCAAATCGAGAGGTATTTGAAGCAA
GCCATTGTTGACAAGAATCCTGTTGTTGCCAGTGCGGCCCTTGTTAGTGGCATCTACTTG
CTTCAAACGAGTCCGGAAGTTGTAAAAAGATGGAGCAATGAAGTTCAAGAGGCTGTGCAG
TCAAGAGCTGCTCTTGTGCAATTTCATGCCCTTGCTCTTCTTCACCAAATTAGACAAAAT
GATCGGTTGGCTGTCAGCAAGCTTGTCACTAGCTTGACCAGGGGTTCAGTTCGCTCTCCG
TTGGCCCAGTGCCTACTTATTCGCTACACTAGCCAGGTGATTAGAGAGTCTGGTGTGTAC
CAAGGTGGAGATCGTCCTTTCTTTGATTTCCTTGAGTCCTGTCTCCGGAATAAAGCAGAA
ATGGTCATACTTGAGGCTGCAAGAGCAATTACAGAACTGAATGGTGTCACAAGCCGAGAG
CTTACACCTGCAATTACTGTGCTGCAGTTGTTCTTAAGTTCATCCAAACCTGTTCTCAGA
TTTGCAGCTGTTCGCACACTTAACAAGGTTGCATCAACTCATCCTTTGGCTGTCACAAAT
TGTAACATAGACATGGAGAGCTTAATCTCTGATCAGAACAGGAGCGTTGCAACCCTTGCA
ATTACAACACTGTTGAAGACAGGCAATGAGTCAAGTGTTGATCGTTTAATGAAACAGATG
ACCAACTTTATGTCAGACATAGCTGATGAGTTTAAGATTGTTGTTGTTGAAGCAATAAGA
TCCCTGTGCTTGAAGTTCCCTCTGAAATATCGCTCATTGATGAACTTCTTGAGTAATATT
CTACGGGAAGAGGGAGGATTCGAGTACAAGAAAGCCATAGTTGATTCAATTATTATACTC
ATTAGAGATATTCCTGATGCGAAGGAAAGCGGTTTATTTCACTTATGCGAATTCATAGAA
GACTGTGAATTCACCTATTTGTCCACTCAGATACTTCACTTTTTGGGAAATGAAGGCCCC
AAAACATCAGATCCCAGTAAATACATACGCTATATATACAATAGGGTGATACTTGAAAAT
GCTACAGTTCGAGCTAGTGCAGTCAGCACATTGGCAAAATTTGGTGCCTTGGTTGACTCA
CTCAAGCCTCGCATATTTGTGCTCCTGAGACGCTGCCTGTTTGATGGAGATGACGAGGTG
CGCGATAGAGCGACCCTTTACCTCAAATTGTTAGGTGGGGAAGCTACAGTGGGTGAGACA
GAGAAGGATGTGAATGAATTTCTCTTCGGCTCACTTGATGTTCCATTAGTAAACTTGGAG
ACGAGTCTGCGGAATTATGAACCTTCGGATGTACCTTTTGATATTTCATCTGTTTCGAAG
GAAACAAAATCCCAACCCCTTGCGGAGAAAAAGTCTACAGGCAAGAAATCAGCAGGTCCA
GCATCTGCTGTCAGTGGCTCTGTTTCTACAGTTGATGCTTCGTATGAGAAGCTTCTTTCG
TCCATTCCGGAATTCGCTGATTTTGGAAAGCTTTTTAAGTCATCTGCACCTGTAGAATTG
ACTGAAGCTGAGACCGAATACTCAGTGAATGTTGTGAAGCATATTTTTGATCGACATGTT
GTGCTCCAATACAACTGTACCAATACAATTCCTGAACAATTGCTTGAACAGGTTATTGTT
TTGGTTGATGCTTCTGAGGCTGACGAATTTTTAGAAGTTGCTTCAAAGCCTTTAGAATCA
TTACCATATGATTCTCCTGGGCAGACCTTTGTGGCTTTTGAAAATCCAGAAGGTGTCATT
GCCACCGGCAAGTTCTCAAATATCCTGAAATTCTTTGTTAAGGAGGTTGATCCATCCACG
GGTGAAGCTGAAGATGATGGTGTCGAGGATGAGTACCAGCTTGAAGATCTTGAAATCGTT
TCTGCTGATTATATGTTGAAGGTGGGAGTATCTAACTTCCGAAATGCCTGGGAAAACATG
GATCCAGAGACTGAGCGAGTTGACGAGTATGGGCTTGGAGTAAGGGAGAGTTTGGCTGAG
GCTGTAAGTGCTGTTATAAGCATCCTTGGCATGCAGCCTTGTGAGGCTTGTAGGGAACTG
ACGTGGTCCCAAGCAATTCAAGGTCGCACACTTGTCTGCTCTCTGGTGTGTTTATTGGCA
ACGTGA

Peptide Sequence

PEP ID

Zm00001d019106_P016
PEP Infomation

pep chromosome:B73_RefGen_v4:7:16900065:16907269:1 gene:Zm00001d019106 transcript:Zm00001d019106_T016 gene_biotype:protein_coding transcript_biotype:protein_coding description:Coatomer subunit gamma

Sequence

MVYLMIKELSPSADEVIIVTSSLMKDMNSKTDMYRANAIRVLCRIIDSTLLTQIERYLKQ
AIVDKNPVVASAALVSGIYLLQTSPEVVKRWSNEVQEAVQSRAALVQFHALALLHQIRQN
DRLAVSKLVTSLTRGSVRSPLAQCLLIRYTSQVIRESGVYQGGDRPFFDFLESCLRNKAE
MVILEAARAITELNGVTSRELTPAITVLQLFLSSSKPVLRFAAVRTLNKVASTHPLAVTN
CNIDMESLISDQNRSVATLAITTLLKTGNESSVDRLMKQMTNFMSDIADEFKIVVVEAIR
SLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIIILIRDIPDAKESGLFHLCEFIE
DCEFTYLSTQILHFLGNEGPKTSDPSKYIRYIYNRVILENATVRASAVSTLAKFGALVDS
LKPRIFVLLRRCLFDGDDEVRDRATLYLKLLGGEATVGETEKDVNEFLFGSLDVPLVNLE
TSLRNYEPSDVPFDISSVSKETKSQPLAEKKSTGKKSAGPASAVSGSVSTVDASYEKLLS
SIPEFADFGKLFKSSAPVELTEAETEYSVNVVKHIFDRHVVLQYNCTNTIPEQLLEQVIV
LVDASEADEFLEVASKPLESLPYDSPGQTFVAFENPEGVIATGKFSNILKFFVKEVDPST
GEAEDDGVEDEYQLEDLEIVSADYMLKVGVSNFRNAWENMDPETERVDEYGLGVRESLAE
AVSAVISILGMQPCEACRELTWSQAIQGRTLVCSLVCLLAT

Transcript Sequence

Transcript ID

Zm00001d019106_T016
Transcript Infomation

cdna chromosome:B73_RefGen_v4:7:16900065:16907269:1 gene:Zm00001d019106 gene_biotype:protein_coding transcript_biotype:protein_coding description:Coatomer subunit gamma

Sequence

TACTCGCCATTCCTGGGCATAGAGAAGGGCGCCGTGCTGCAGGAGGCCCGAGTCTTCCAT
GACCCTCAGCTCGACGCGCGGCGATGCTGCCAGGTTATCACCAAGCTCCTGTACCTGCTC
AACCAGGGTGATACCTTTACCAAGGTACACTGGCACATCGTTTATCCTACCACGATCATA
ATTTGGCAGGGTTTTTAGATTCAGAGTGCTGGTACTCTTTTTATATTTAAAATTAGTGTG
AAGTTTGGCCATACTTATCGTCCTCCAAATCATAATTTGGCTGGTTATTTAGATTCAGAT
TGATGGTACTTGTCATATATATTTAAAATTAGTGTGAAGTTTGACCATACTCAATGTCCT
CTGAAAAGAAGTTGGTACCTACAAAGTTAGGTTCAACACCTGGTACCCTGAATAACATTA
GGTGAGAAGTTACTTGCTAGCTTAATGTGTAGAGTAGACCTTATGCATGCTTCAAACACT
GCAAGTACAAAGGGGGGCCAGGAGTACATATAATCACATGTGATGTAGTGCAGTTTCTTC
AATACATTAGTGTGGCCATTGTGCTCTACTCCAGGATCTGTGCTACTTGATAGTTTTCTA
TGAGTGGAAAAATTGCAGGTTGGCCATTGTGCTATAGTCCATGACTTGTGCTACTTGATA
GTTTTATGAGTGGAAAATTGTAGGTTGAGGCTACAGAGGTCTTCTTTGCAACGACCAAGC
TGTTCCAGTCTAAAGATGCGGGCCTTAGGAGGATGGTGTACCTCATGATCAAGGAACTCT
CACCTTCAGCCGATGAGGTCATCATAGTAACAAGCTCTTTGATGAAGGACATGAATAGCA
AAACTGATATGTACCGTGCAAATGCTATTAGAGTTCTTTGTCGTATTATTGACTCAACCC
TTCTCACCCAAATCGAGAGGTATTTGAAGCAAGCCATTGTTGACAAGAATCCTGTTGTTG
CCAGTGCGGCCCTTGTTAGTGGCATCTACTTGCTTCAAACGAGTCCGGAAGTTGTAAAAA
GATGGAGCAATGAAGTTCAAGAGGCTGTGCAGTCAAGAGCTGCTCTTGTGCAATTTCATG
CCCTTGCTCTTCTTCACCAAATTAGACAAAATGATCGGTTGGCTGTCAGCAAGCTTGTCA
CTAGCTTGACCAGGGGTTCAGTTCGCTCTCCGTTGGCCCAGTGCCTACTTATTCGCTACA
CTAGCCAGGTGATTAGAGAGTCTGGTGTGTACCAAGGTGGAGATCGTCCTTTCTTTGATT
TCCTTGAGTCCTGTCTCCGGAATAAAGCAGAAATGGTCATACTTGAGGCTGCAAGAGCAA
TTACAGAACTGAATGGTGTCACAAGCCGAGAGCTTACACCTGCAATTACTGTGCTGCAGT
TGTTCTTAAGTTCATCCAAACCTGTTCTCAGATTTGCAGCTGTTCGCACACTTAACAAGG
TTGCATCAACTCATCCTTTGGCTGTCACAAATTGTAACATAGACATGGAGAGCTTAATCT
CTGATCAGAACAGGAGCGTTGCAACCCTTGCAATTACAACACTGTTGAAGACAGGCAATG
AGTCAAGTGTTGATCGTTTAATGAAACAGATGACCAACTTTATGTCAGACATAGCTGATG
AGTTTAAGATTGTTGTTGTTGAAGCAATAAGATCCCTGTGCTTGAAGTTCCCTCTGAAAT
ATCGCTCATTGATGAACTTCTTGAGTAATATTCTACGGGAAGAGGGAGGATTCGAGTACA
AGAAAGCCATAGTTGATTCAATTATTATACTCATTAGAGATATTCCTGATGCGAAGGAAA
GCGGTTTATTTCACTTATGCGAATTCATAGAAGACTGTGAATTCACCTATTTGTCCACTC
AGATACTTCACTTTTTGGGAAATGAAGGCCCCAAAACATCAGATCCCAGTAAATACATAC
GCTATATATACAATAGGGTGATACTTGAAAATGCTACAGTTCGAGCTAGTGCAGTCAGCA
CATTGGCAAAATTTGGTGCCTTGGTTGACTCACTCAAGCCTCGCATATTTGTGCTCCTGA
GACGCTGCCTGTTTGATGGAGATGACGAGGTGCGCGATAGAGCGACCCTTTACCTCAAAT
TGTTAGGTGGGGAAGCTACAGTGGGTGAGACAGAGAAGGATGTGAATGAATTTCTCTTCG
GCTCACTTGATGTTCCATTAGTAAACTTGGAGACGAGTCTGCGGAATTATGAACCTTCGG
ATGTACCTTTTGATATTTCATCTGTTTCGAAGGAAACAAAATCCCAACCCCTTGCGGAGA
AAAAGTCTACAGGCAAGAAATCAGCAGGTCCAGCATCTGCTGTCAGTGGCTCTGTTTCTA
CAGTTGATGCTTCGTATGAGAAGCTTCTTTCGTCCATTCCGGAATTCGCTGATTTTGGAA
AGCTTTTTAAGTCATCTGCACCTGTAGAATTGACTGAAGCTGAGACCGAATACTCAGTGA
ATGTTGTGAAGCATATTTTTGATCGACATGTTGTGCTCCAATACAACTGTACCAATACAA
TTCCTGAACAATTGCTTGAACAGGTTATTGTTTTGGTTGATGCTTCTGAGGCTGACGAAT
TTTTAGAAGTTGCTTCAAAGCCTTTAGAATCATTACCATATGATTCTCCTGGGCAGACCT
TTGTGGCTTTTGAAAATCCAGAAGGTGTCATTGCCACCGGCAAGTTCTCAAATATCCTGA
AATTCTTTGTTAAGGAGGTTGATCCATCCACGGGTGAAGCTGAAGATGATGGTGTCGAGG
ATGAGTACCAGCTTGAAGATCTTGAAATCGTTTCTGCTGATTATATGTTGAAGGTGGGAG
TATCTAACTTCCGAAATGCCTGGGAAAACATGGATCCAGAGACTGAGCGAGTTGACGAGT
ATGGGCTTGGAGTAAGGGAGAGTTTGGCTGAGGCTGTAAGTGCTGTTATAAGCATCCTTG
GCATGCAGCCTTGTGAGGCTTGTAGGGAACTGACGTGGTCCCAAGCAATTCAAGGTCGCA
CACTTGTCTGCTCTCTGGTGTGTTTATTGGCAACGTGAAAGTCTTGGTGAGACTGTCATT
TGGAATTAGTGCACCGAAGGAGGTGGCCATGAAGCTGGCAGTTAGATCTGACGATCCAGA
GATCAGTGACAGGATCCACGAAATTGTCGCTAATGGCTAAAAACAATGGTAGTATCTTTT
TTTTACTCCTTTTCTTTTGGCTTTCATGCTACGGGAAGTTTGAGGGGATTCAATTAATTA
GAGTATATGTAAGTTTGGTTTCCAGTCGAATCTATCATTCGTTGCACCATCATTCTTCCT
TGACACAGTACACCAGTTTTTGGTTGTTTTGGATCTGTACAATTTTCCTTATATACTGAG
GACTTAAAATAGTATACGCAATAATATGCAGGTAAAGTTTTGC