Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d019039_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:7:13826135:13833785:1 gene:Zm00001d019039 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PHD-transcription factor 3 description:SHL1

Sequence

ATGGCGGGGAAGTCGCGACCGCCCAAGCGGATCCTCGAGTCCTATACCATCAAGGGTTCG
GACAGAGTCATCAAGCCTGGCGATTGCGTGCTAATGAGGGCATCTGATGCTTCAAAGCCA
CCTTATGTGGCAAGAGTTGAGGCAATTGAAGCAGCAGGATCTCGAGGCACCAATGTGAGA
GTACGAGTGCGGTGGTATTATCGACCAGAGGAGTCCATAGGTGGTCGGCGGCCATTTCAT
GGTTCCAAGGAGGTTTTCCTCTCTGACCACTATGATGTACAAAGTGCTGACACCATTGAG
GGGAAATGCAATGTCCACAGCTTCCGTAGCTATACAAAGCTTGATTCTGTCAATGCTGAG
GATTTCTTCTGCCGCTTCGAGTATAAATCAGCTACTGGCAGCTTTGTACCAGATCGTATA
GCAGTGTTTTGCAAGTGCGAGATGCCATACAATCCAGATGACCTTATGATCCAATGCGAG
GAATGTTCTGACTGGTTTCACCCTGCTTGCATTGGGATGACAATCAAAGAAGCAAAGAAA
CTCGAGCATTTTTTCTGCCAGACCTGTACAGCTGAAAATGGTAAGATGGTTGAGAATTCA
CATGAAGCTACAGCGCAATCAGAAGAAAAGCCGGTGGAGTCAAAAAGGCGGCGAAGGTGA

Peptide Sequence

PEP ID

Zm00001d019039_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:7:13826135:13833785:1 gene:Zm00001d019039 transcript:Zm00001d019039_T002 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PHD-transcription factor 3 description:SHL1

Sequence

MAGKSRPPKRILESYTIKGSDRVIKPGDCVLMRASDASKPPYVARVEAIEAAGSRGTNVR
VRVRWYYRPEESIGGRRPFHGSKEVFLSDHYDVQSADTIEGKCNVHSFRSYTKLDSVNAE
DFFCRFEYKSATGSFVPDRIAVFCKCEMPYNPDDLMIQCEECSDWFHPACIGMTIKEAKK
LEHFFCQTCTAENGKMVENSHEATAQSEEKPVESKRRRR

Transcript Sequence

Transcript ID

Zm00001d019039_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:7:13826135:13833785:1 gene:Zm00001d019039 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PHD-transcription factor 3 description:SHL1

Sequence

GCGACCGCGAGCGCCTCCGCATTTCGAACCAAAGGGGGCAGAACTGAGAGATCGAGAGAA
ATAATAAAAAAAAATCCGTCTTCTTGTGGTCTTCTCCAAACCCTAGCGCCCCCGGCCCCG
GTCTCCGCCCCCCCGCCTTCGCCGTCGCGGTCGCGCCCCATGGCGGGGAAGTCGCGACCG
CCCAAGCGGATCCTCGAGTCCTATACCATCAAGGGTTCGGACAGAGTCATCAAGCCTGGC
GATTGCGTGCTAATGAGGGCATCTGATGCTTCAAAGCCACCTTATGTGGCAAGAGTTGAG
GCAATTGAAGCAGCAGGATCTCGAGGCACCAATGTGAGAGTACGAGTGCGGTGGTATTAT
CGACCAGAGGAGTCCATAGGTGGTCGGCGGCCATTTCATGGTTCCAAGGAGGTTTTCCTC
TCTGACCACTATGATGTACAAAGTGCTGACACCATTGAGGGGAAATGCAATGTCCACAGC
TTCCGTAGCTATACAAAGCTTGATTCTGTCAATGCTGAGGATTTCTTCTGCCGCTTCGAG
TATAAATCAGCTACTGGCAGCTTTGTACCAGATCGTATAGCAGTGTTTTGCAAGTGCGAG
ATGCCATACAATCCAGATGACCTTATGATCCAATGCGAGGAATGTTCTGACTGGTTTCAC
CCTGCTTGCATTGGGATGACAATCAAAGAAGCAAAGAAACTCGAGCATTTTTTCTGCCAG
ACCTGTACAGCTGAAAATGGTAAGATGGTTGAGAATTCACATGAAGCTACAGCGCAATCA
GAAGAAAAGCCGGTGGAGTCAAAAAGGCGGCGAAGGTGATGGCCGTGCTGATTAAATTTA
TGAAATCTATGCTCGGTTGTACAAAGCCTTCCCACGTTTCACGTTTGAGAACTGTAATTT
TATTGTTCGTCGCAGTTTGTGGTCCTGGGCTGGGGTCCCTCTAATGTCAGGCACACTGTA
TATAGCTTGTAACCTGGTCAGATTGTTGTATTAGAGCACACTAGGGTTTGTGTGATAGCA
CGGAAGTTCGGACTACTGAGTATGTGTAGAGTATGGCATTATAATGCCAGCATCAGGTGA
TCAGGCTTCTTCTGGGCATTAGGACTCCTGCATGATCCAGCAATAATACTTCCATGCAGC
TGGACCTGGTTAGTCACTAGTAAGTTGTCAGGAAACTTAGTACTGCCATGTGAACTTTTT
TTGAAACCCTCTATGTAATGTAAGCATCTGTGTCCTACTTGCAAACTGTTGCACGAAATT
GGGCACCCACCCTGGCCCATTGGCTGCGGTTGCATAATTGCGGCAACTAACTTGTGTTTT
AAGTTTGGAGGAACAATAATAAAGTTTAGGCTCATTGAACTGGTCTGGTTC