Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Zea mays ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d018943_T003
CDS Infomation	cds chromosome:B73_RefGen_v4:7:10079269:10083105:1 gene:Zm00001d018943 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein
Sequence	ATGGCCTCTCCGTCCCCGTCCTCTCCCACTGACCGCCGCCGCAGGCACACCATCTACCAC GGCCACCGCCGCGCCTCGCCGCACCGGCCCACAGTCCGCGGCGGCCTCTTCACTGATCTC CGCTTCCCCTCCACTATACACCGCCCTTCCTCCTCCCCCTCCACCGCCACCGCCTTCCGC CTCCGTGACTGGGATCCACACTCGCCCTCTTCCTCGTCGTCTGCTCGCTCTCCGTCACCT CCTTCCGCCTCCTCCTCCTCCTCCACATCCGCCTCCGCTCGCCGCCTCTCCCCGCTCGCG CGCTTCCTCCTCGACGCGCTCCGCCGCCACCAGCGCTGGGGACCGCCCGTTGTCGCCGAT CTCTCCAAGCTCCGCCGCGTCCCTCCATCCCTCGTCGCTGAGGTCCTCACCGCGCGCCCT CCCCCGCCGCCTCCGCTCGCGCTCCCGTTCTTCCTCTGGGCGGGCCGCCAGAAGGGCTTC CGTCACTGCTTCCCAGCTTTCCATGCCCTCGCCTCGCTACTGTCCGCGGCGGGCCTCCCA GCCGCGGCTGACCAGCTCCCCGACCTCATGCGCGCGCACGGCAGACCGATCTCCCACCCG CAGCTCACCCTCCTCGTCCGCCTCCACACCGCCGCGCGCCGCCCCCTCCGCGCTCTGCAC GCGCTTCGCCGCTTCCGCCACGAGTTCGACGTCCAACCCCAGGTCCACGCGTGCAACCGC GTCCTTGGCGCGCTGGCTGCTGCGGGCCACGTTGAGGACGCGCTCAAGCTGTTCGATGAA ATGTCGGAGGGTGGTGTGCAGCCCATCCCAGTGACGTTTGCCATCATGGTTCGTGCACTA GCACACGCCGGAATGGTTGATAGGCTTCTGGAGATGATTGGGAGGATGCGGAACGAGGTG TGTCGGCCTGATGTCTTTGTGTACACTGCACTGGTGAAGACAATGGTGCGGAGGGGGTAT ATGGATGGCTGCATGAGGGTTTGGGACGAAATGGAAAAGGATGGGGTGGAGCCAGACACA ATGGCATATGCTACTATGGTCGGGGGACTCTGCAAGGCTGGGATGGTGGAGGAAGCAGCA GAATTGTTCAAGGAGATGAGGAGCAAGGGGTTACTGGTGGACAGGATGGTGTATGCATCG CTCATTGATGGGTATGTTGCTGTTGGCAGGGTTGGGGATGGGTGTAGGTTGTTGAACGAG TTGGTTGATGCTGGCTACCGTGCTGACCTGGGGATATATAACACACTTATTATTGGGCTG TGTGGCATAGGTAGGGAGGATAAGGCTCATAAGTTATTTCAGATTGTTCTTCAGGAGGAC CTTATGCCAAGTTCTGATACTGTTTCACCGTTGCTAGCTTGTTATGCCGAAAAGGGTGAA ATGGTTACATTTTTTGGGTTGGTTAACAAACTGGCAGAGATGGGCTTGTCTGTTGTTGAA ATGTTAGTAGATTTTATGAAGCTCCTTGCAGGAAAGGATGGTAGGGTATTGAAGGCTGTG GAAGTGTTTGATGCATTGAGACAAAAACAGTATTGTAGTGTTGGCATTTATAATATTCTT ATTGAAAATCTGCTGAAGATCAAGGATAGGAAGAAATCACTTTTGTTGTTTGAAGAAATG CAAAGCTCAGTTGATTTTAAACCAGATTCATGTACATATAGTCATATGATCCCATGTTTC GTGGATGAAGGAAATGTCAAAGAGGCCTGCTCATGCTACAACACCATGATGAAGGAAAAT TGGATACCAAGTATGTCAGCCTACTGTGTTCTTGTGAAAGGGCTTTGCAAGATGGGGGAG ATCAACACAGCCATATCACTTGTTAAAGATTGTCTTGGAAATATAGAAAATGGGCCAGCT GAATTTAAATACACCTTGACTATTCTGGAAGCTTGCAGATCAAAAAGACCAGAGAAAGTC ATCAATGTGGTGTATGAGATGATTGAAGTAGGTTGTTCAATGGAAGAAATTGTCTATTCT GCTATCATATATGGCTTCTGCAAGTATGCAAGTTCAACTGAGGCGAGACAGGAGAAAGTG GAGTTTTTGAGGGGCCAGAATTGGAGCGTTACACTGACTAGGAGCAGGGCTTCACCCTCC TCAAGCCAGCCTCCTGGCCCAAGGATACTACGTTGTACATTCCGATCGTGGATTGCACAT GTGGATTGTTGTGCCAAAGTCTTTTGTTTGGTGAAGGTGGAGAAGATGGGCGTGACAGCG TTGTTTCAACAGGAGGGTGAAGGGAGCAACAATATTGGGTTTGTCGTCAACCTTCGGCTT AATTCGCTGACGGAGTTCGGGACGCCGCCAGTTCATCGCGGGCAAACTTCTGCAAGCAGA GAAGAAAAAGGATGTTCTCAGTGGGAGAGAGATCAGGTCATGGCGGCCTGGCAGTGTATG AAATTGAGTACACACTGGATAGCACTAGGTGAGGGATGA

Peptide Sequence

PEP ID	Zm00001d018943_P003
PEP Infomation	pep chromosome:B73_RefGen_v4:7:10079269:10083105:1 gene:Zm00001d018943 transcript:Zm00001d018943_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein
Sequence	MASPSPSSPTDRRRRHTIYHGHRRASPHRPTVRGGLFTDLRFPSTIHRPSSSPSTATAFR LRDWDPHSPSSSSSARSPSPPSASSSSSTSASARRLSPLARFLLDALRRHQRWGPPVVAD LSKLRRVPPSLVAEVLTARPPPPPPLALPFFLWAGRQKGFRHCFPAFHALASLLSAAGLP AAADQLPDLMRAHGRPISHPQLTLLVRLHTAARRPLRALHALRRFRHEFDVQPQVHACNR VLGALAAAGHVEDALKLFDEMSEGGVQPIPVTFAIMVRALAHAGMVDRLLEMIGRMRNEV CRPDVFVYTALVKTMVRRGYMDGCMRVWDEMEKDGVEPDTMAYATMVGGLCKAGMVEEAA ELFKEMRSKGLLVDRMVYASLIDGYVAVGRVGDGCRLLNELVDAGYRADLGIYNTLIIGL CGIGREDKAHKLFQIVLQEDLMPSSDTVSPLLACYAEKGEMVTFFGLVNKLAEMGLSVVE MLVDFMKLLAGKDGRVLKAVEVFDALRQKQYCSVGIYNILIENLLKIKDRKKSLLLFEEM QSSVDFKPDSCTYSHMIPCFVDEGNVKEACSCYNTMMKENWIPSMSAYCVLVKGLCKMGE INTAISLVKDCLGNIENGPAEFKYTLTILEACRSKRPEKVINVVYEMIEVGCSMEEIVYS AIIYGFCKYASSTEARQEKVEFLRGQNWSVTLTRSRASPSSSQPPGPRILRCTFRSWIAH VDCCAKVFCLVKVEKMGVTALFQQEGEGSNNIGFVVNLRLNSLTEFGTPPVHRGQTSASR EEKGCSQWERDQVMAAWQCMKLSTHWIALGEG

Transcript Sequence

Transcript ID	Zm00001d018943_T003
Transcript Infomation	cdna chromosome:B73_RefGen_v4:7:10079269:10083105:1 gene:Zm00001d018943 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein
Sequence	ATGGCCTCTCCGTCCCCGTCCTCTCCCACTGACCGCCGCCGCAGGCACACCATCTACCAC GGCCACCGCCGCGCCTCGCCGCACCGGCCCACAGTCCGCGGCGGCCTCTTCACTGATCTC CGCTTCCCCTCCACTATACACCGCCCTTCCTCCTCCCCCTCCACCGCCACCGCCTTCCGC CTCCGTGACTGGGATCCACACTCGCCCTCTTCCTCGTCGTCTGCTCGCTCTCCGTCACCT CCTTCCGCCTCCTCCTCCTCCTCCACATCCGCCTCCGCTCGCCGCCTCTCCCCGCTCGCG CGCTTCCTCCTCGACGCGCTCCGCCGCCACCAGCGCTGGGGACCGCCCGTTGTCGCCGAT CTCTCCAAGCTCCGCCGCGTCCCTCCATCCCTCGTCGCTGAGGTCCTCACCGCGCGCCCT CCCCCGCCGCCTCCGCTCGCGCTCCCGTTCTTCCTCTGGGCGGGCCGCCAGAAGGGCTTC CGTCACTGCTTCCCAGCTTTCCATGCCCTCGCCTCGCTACTGTCCGCGGCGGGCCTCCCA GCCGCGGCTGACCAGCTCCCCGACCTCATGCGCGCGCACGGCAGACCGATCTCCCACCCG CAGCTCACCCTCCTCGTCCGCCTCCACACCGCCGCGCGCCGCCCCCTCCGCGCTCTGCAC GCGCTTCGCCGCTTCCGCCACGAGTTCGACGTCCAACCCCAGGTCCACGCGTGCAACCGC GTCCTTGGCGCGCTGGCTGCTGCGGGCCACGTTGAGGACGCGCTCAAGCTGTTCGATGAA ATGTCGGAGGGTGGTGTGCAGCCCATCCCAGTGACGTTTGCCATCATGGTTCGTGCACTA GCACACGCCGGAATGGTTGATAGGCTTCTGGAGATGATTGGGAGGATGCGGAACGAGGTG TGTCGGCCTGATGTCTTTGTGTACACTGCACTGGTGAAGACAATGGTGCGGAGGGGGTAT ATGGATGGCTGCATGAGGGTTTGGGACGAAATGGAAAAGGATGGGGTGGAGCCAGACACA ATGGCATATGCTACTATGGTCGGGGGACTCTGCAAGGCTGGGATGGTGGAGGAAGCAGCA GAATTGTTCAAGGAGATGAGGAGCAAGGGGTTACTGGTGGACAGGATGGTGTATGCATCG CTCATTGATGGGTATGTTGCTGTTGGCAGGGTTGGGGATGGGTGTAGGTTGTTGAACGAG TTGGTTGATGCTGGCTACCGTGCTGACCTGGGGATATATAACACACTTATTATTGGGCTG TGTGGCATAGGTAGGGAGGATAAGGCTCATAAGTTATTTCAGATTGTTCTTCAGGAGGAC CTTATGCCAAGTTCTGATACTGTTTCACCGTTGCTAGCTTGTTATGCCGAAAAGGGTGAA ATGGTTACATTTTTTGGGTTGGTTAACAAACTGGCAGAGATGGGCTTGTCTGTTGTTGAA ATGTTAGTAGATTTTATGAAGCTCCTTGCAGGAAAGGATGGTAGGGTATTGAAGGCTGTG GAAGTGTTTGATGCATTGAGACAAAAACAGTATTGTAGTGTTGGCATTTATAATATTCTT ATTGAAAATCTGCTGAAGATCAAGGATAGGAAGAAATCACTTTTGTTGTTTGAAGAAATG CAAAGCTCAGTTGATTTTAAACCAGATTCATGTACATATAGTCATATGATCCCATGTTTC GTGGATGAAGGAAATGTCAAAGAGGCCTGCTCATGCTACAACACCATGATGAAGGAAAAT TGGATACCAAGTATGTCAGCCTACTGTGTTCTTGTGAAAGGGCTTTGCAAGATGGGGGAG ATCAACACAGCCATATCACTTGTTAAAGATTGTCTTGGAAATATAGAAAATGGGCCAGCT GAATTTAAATACACCTTGACTATTCTGGAAGCTTGCAGATCAAAAAGACCAGAGAAAGTC ATCAATGTGGTGTATGAGATGATTGAAGTAGGTTGTTCAATGGAAGAAATTGTCTATTCT GCTATCATATATGGCTTCTGCAAGTATGCAAGTTCAACTGAGGCGAGACAGGAGAAAGTG GAGTTTTTGAGGGGCCAGAATTGGAGCGTTACACTGACTAGGAGCAGGGCTTCACCCTCC TCAAGCCAGCCTCCTGGCCCAAGGATACTACGTTGTACATTCCGATCGTGGATTGCACAT GTGGATTGTTGTGCCAAAGTCTTTTGTTTGGTGAAGGTGGAGAAGATGGGCGTGACAGCG TTGTTTCAACAGGAGGGTGAAGGGAGCAACAATATTGGGTTTGTCGTCAACCTTCGGCTT AATTCGCTGACGGAGTTCGGGACGCCGCCAGTTCATCGCGGGCAAACTTCTGCAAGCAGA GAAGAAAAAGGATGTTCTCAGTGGGAGAGAGATCAGGTCATGGCGGCCTGGCAGTGTATG AAATTGAGTACACACTGGATAGCACTAGGTGAGGGATGAAACAGATCTTCTCGGGTGCAT TTGTTGCTTCAAGGAAGCTTTATCTGCTCAACATAGCCTATTCAGACACCCGGACAGTGA GTCAAGAATTGTTCTGGACAAAGCATTCCATTCTTTTGATTATGTATAGTTTATATTTTC TATGGCAGAAAATATAGTCGTGAGTATTTGTTTGTTTGTAAAAAGAGTGCTAATCAAAAG GTTGCATTGTCGTCTTGTCCAGTACTATTGCACCTTTATCAGTGATGTCAGGCTATAAGT AATTTCAGTTTAGATAATGAACTTCATCTTGCACATATTGGTAACATTATTTGTGTCGAA AGCAGTAAAATGTCGTGATCTTAATTCCTAGCCTAACACTACTGCATTTGTAATATCTTG GACTTGAAATTTTATACAGTGGAGTACATCTATATTTTTTTGAGACTT