Gene sequences

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SNP Detection
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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d018935_T004
CDS Infomation	cds chromosome:B73_RefGen_v4:7:9652725:9658044:1 gene:Zm00001d018935 gene_biotype:protein_coding transcript_biotype:protein_coding description:Serine/threonine-protein kinase Nek1
Sequence	ATGGAGCAGTACGAGGTGCTGGAGCAGATTGGGAAGGGTTCGTTCGGCTCGGCGCTCCTG GTGAGGCACAAGGCTGAGAGGAAAAGGTATGTCTTGAAGAAGATCCGCCTCGCACGCCAG ACCGACCGGTGCCGCCGATCAGCACACCAGGAGATGGAGCTCATCGCAAAAGTAAGGAAT CCTTACATTGTGGAATACAAAGATGCTTGGGTGGAGAAGGGTTGCTACGTGTGTATTGTC ATTGGTTACTGCGAGGGAGGGGACATGTCAGAGGCCATTAAGAAGGCTAACAGTAACCAT TTCTCAGAAGAGAAACTTTGTGTGTGGCTTGTGCAGCTCCTGACGGCACTTGATTACTTG CATGCCAATCATATCCTTCATCGTGATGTTAAGTGCTCAAACATATTTCTCACAAAGGAT CAAAACATAAGGCTTGGTGATTTTGGTCTTGCTAAAGTCTTAACTTCTGATGATTTAGCT TGTTCAGTTGTGGGAACTCCAAGTTACATGTGCCCTGAACTTCTTGCTGACATTCCATAT GGTTCCAAGTCTGACATATGGTCCCTCGGCTGCTGCATCTATGAGATGGCTGCTTTCAAG CCTCCATTCAAAGCATTTGATATGCAAGCACTGATAAATAAGATTAACAAGTCTGCTGTA CCTCCTCTACCAACGATGTACTCTGGTGCATTTAGGGGACTCGTCAAAAGCATGCTGCGC AAAAGTCCAGATCATAGACCAAGAGCTGCAGAACTGCTTAAGCATCCACACCTTCAGCCA TACGTGTTTGAACTCCAATTGAAATCCACTCCTCGCAATTTGTTCTCTGCTAAGCTTCCT ACCAGATACGTCACAAATAAGGCTGCGGTTTCTGATGCCGAAGACAATTGTCCACCAAAA TACAGCAAGAGCCATTCATTTAAATTGGACAGGCATGGTCGTCCTGGTTCTACAACTCGG AAAGACTGTCCAGAACTAAGTGAACAAATGGAGGGATTGTCAGTCCAAGTCACCAAGAAT GTTAATGATGAACTGATACATGAGAAGTATCCAAAAGTTACAACGTCTCCTGCACCTACT CCGAGAAGAGCTTCATCGACACCAAGACGACGACTAGAAGCTTCAAAGACATTTCATGCT AGAACAGCACATAAGGAGCAATCTCAAAGGTCAAGGTCTTCAGCAAACCAAGCGAGTCAA GCACGGAGAGAATCACTCCCCATGCGTATGATCAAAACTCCTGATAAGAGGCAGGCCACT GACATTCTCACTAGATTGAAATCTCCTGACGTTTCAGTAAACTCTCCTCGAATAGACAGA ATTGCTGAATTCCCACTGGCATCCTTTGAAACCCCATTACATCGCATCACAAAGCTCACA TCGCCATCTATCATTGACCAATATATTACCAAGGACAAGTGCACTTTCCAAGTGCTCCGA AGCGATAGCGAAAACTACACTGACTCTCCTGACGTCGACCTTCTTGGTTCTGACAATTCA CCTAGGAGTTCATCGAATTTGAGGCAGAGGAGGTTTGACACGAGGTCTTACCAGCAGAGA GCTGAGGCTCTAGAGGGATTGCTTGAGTTCAGTGCTCAATTGCTACAGCAGGAGAGGTTT GAGGAGTTGGGGATCTTGCTGAAGCCATTTGGACCCGGTAAGGCATCTCCAAGAGAGACA GCCATATGGTTGTCAAGGAGTTTGAAAGAAACTGGATTATAA

Peptide Sequence

PEP ID	Zm00001d018935_P004
PEP Infomation	pep chromosome:B73_RefGen_v4:7:9652725:9658044:1 gene:Zm00001d018935 transcript:Zm00001d018935_T004 gene_biotype:protein_coding transcript_biotype:protein_coding description:Serine/threonine-protein kinase Nek1
Sequence	MEQYEVLEQIGKGSFGSALLVRHKAERKRYVLKKIRLARQTDRCRRSAHQEMELIAKVRN PYIVEYKDAWVEKGCYVCIVIGYCEGGDMSEAIKKANSNHFSEEKLCVWLVQLLTALDYL HANHILHRDVKCSNIFLTKDQNIRLGDFGLAKVLTSDDLACSVVGTPSYMCPELLADIPY GSKSDIWSLGCCIYEMAAFKPPFKAFDMQALINKINKSAVPPLPTMYSGAFRGLVKSMLR KSPDHRPRAAELLKHPHLQPYVFELQLKSTPRNLFSAKLPTRYVTNKAAVSDAEDNCPPK YSKSHSFKLDRHGRPGSTTRKDCPELSEQMEGLSVQVTKNVNDELIHEKYPKVTTSPAPT PRRASSTPRRRLEASKTFHARTAHKEQSQRSRSSANQASQARRESLPMRMIKTPDKRQAT DILTRLKSPDVSVNSPRIDRIAEFPLASFETPLHRITKLTSPSIIDQYITKDKCTFQVLR SDSENYTDSPDVDLLGSDNSPRSSSNLRQRRFDTRSYQQRAEALEGLLEFSAQLLQQERF EELGILLKPFGPGKASPRETAIWLSRSLKETGL

Transcript Sequence

Transcript ID	Zm00001d018935_T004
Transcript Infomation	cdna chromosome:B73_RefGen_v4:7:9652725:9658044:1 gene:Zm00001d018935 gene_biotype:protein_coding transcript_biotype:protein_coding description:Serine/threonine-protein kinase Nek1
Sequence	GGTCCACTGCAAAATTGTAAATTCTCCCATGTCATCAGTTCTTGCTTCGTTCCCTTCACG TTCTGACTTTATTGTTCAAATGCTCATCCATGCAATGGGTTTACAACCAGCATTCGCAAA CTTGAACTTTCCTTTTTTTACATAAAAAAATAATAAAAAAGAGGTGATTTCTGAGCCAGC CAGGAGCTTGACAGTCACAGGGATGGAGCAGTACGAGGTGCTGGAGCAGATTGGGAAGGG TTCGTTCGGCTCGGCGCTCCTGGTGAGGCACAAGGCTGAGAGGAAAAGGTATGTCTTGAA GAAGATCCGCCTCGCACGCCAGACCGACCGGTGCCGCCGATCAGCACACCAGGAGATGGA GCTCATCGCAAAAGTAAGGAATCCTTACATTGTGGAATACAAAGATGCTTGGGTGGAGAA GGGTTGCTACGTGTGTATTGTCATTGGTTACTGCGAGGGAGGGGACATGTCAGAGGCCAT TAAGAAGGCTAACAGTAACCATTTCTCAGAAGAGAAACTTTGTGTGTGGCTTGTGCAGCT CCTGACGGCACTTGATTACTTGCATGCCAATCATATCCTTCATCGTGATGTTAAGTGCTC AAACATATTTCTCACAAAGGATCAAAACATAAGGCTTGGTGATTTTGGTCTTGCTAAAGT CTTAACTTCTGATGATTTAGCTTGTTCAGTTGTGGGAACTCCAAGTTACATGTGCCCTGA ACTTCTTGCTGACATTCCATATGGTTCCAAGTCTGACATATGGTCCCTCGGCTGCTGCAT CTATGAGATGGCTGCTTTCAAGCCTCCATTCAAAGCATTTGATATGCAAGCACTGATAAA TAAGATTAACAAGTCTGCTGTACCTCCTCTACCAACGATGTACTCTGGTGCATTTAGGGG ACTCGTCAAAAGCATGCTGCGCAAAAGTCCAGATCATAGACCAAGAGCTGCAGAACTGCT TAAGCATCCACACCTTCAGCCATACGTGTTTGAACTCCAATTGAAATCCACTCCTCGCAA TTTGTTCTCTGCTAAGCTTCCTACCAGATACGTCACAAATAAGGCTGCGGTTTCTGATGC CGAAGACAATTGTCCACCAAAATACAGCAAGAGCCATTCATTTAAATTGGACAGGCATGG TCGTCCTGGTTCTACAACTCGGAAAGACTGTCCAGAACTAAGTGAACAAATGGAGGGATT GTCAGTCCAAGTCACCAAGAATGTTAATGATGAACTGATACATGAGAAGTATCCAAAAGT TACAACGTCTCCTGCACCTACTCCGAGAAGAGCTTCATCGACACCAAGACGACGACTAGA AGCTTCAAAGACATTTCATGCTAGAACAGCACATAAGGAGCAATCTCAAAGGTCAAGGTC TTCAGCAAACCAAGCGAGTCAAGCACGGAGAGAATCACTCCCCATGCGTATGATCAAAAC TCCTGATAAGAGGCAGGCCACTGACATTCTCACTAGATTGAAATCTCCTGACGTTTCAGT AAACTCTCCTCGAATAGACAGAATTGCTGAATTCCCACTGGCATCCTTTGAAACCCCATT ACATCGCATCACAAAGCTCACATCGCCATCTATCATTGACCAATATATTACCAAGGACAA GTGCACTTTCCAAGTGCTCCGAAGCGATAGCGAAAACTACACTGACTCTCCTGACGTCGA CCTTCTTGGTTCTGACAATTCACCTAGGAGTTCATCGAATTTGAGGCAGAGGAGGTTTGA CACGAGGTCTTACCAGCAGAGAGCTGAGGCTCTAGAGGGATTGCTTGAGTTCAGTGCTCA ATTGCTACAGCAGGAGAGGTTTGAGGAGTTGGGGATCTTGCTGAAGCCATTTGGACCCGG TAAGGCATCTCCAAGAGAGACAGCCATATGGTTGTCAAGGAGTTTGAAAGAAACTGGATT ATAACCAGCGGCCTGTAAGTGCAACACTAAACCTGCAATGACTTTGTATCTTCACAAGCT TCAACCTACCCTGTACAGTTACAGTATTGTGATTTTTTCACTTGACTGGTCTGGTCTTAG TGGAACACTGCAACATGTTGACATGGTTAGTTCGGCAATCATCTGCTTTCTGTAAACCTG TAATAACATGCTTGAGAATTTACCAATCAGATGAAAAATAGCTTAGATGCCTGTGAATTT GTATCTTGAAATCATGTAAATCAGCAAGAGTTGACATTTGGAGAGCCCCTTTCTATGACG CAGCTTGATATCGTTCATTGTCATTGCATTTTGTACTTTTCTTCAGGTCATGAAAACAAT GAAGTGTTCATGGTCC