Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d018859_T042
CDS Infomation

cds chromosome:B73_RefGen_v4:7:7543097:7554863:-1 gene:Zm00001d018859 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ubiquitin carboxyl-terminal hydrolase 13
Sequence

ATGACGACCTCGCCGCCGCCCGCCGAGCAGCAGCATGAGGAAGAGGAGGTGCTGGTGCCG
TATGGCCCGCACCTGGAGTTGCCCAATGGAGCGCAGCCAATGGAAGTTGTGCCTGCTGAG
CCAGCTGCTACTGTGGAAAACCAACAGATAGAGGATCCACCAATATCGAGATTTACTTGG
ACCATTGAGAACCTATCAAGAGTTAGCACGAAGAAGCTGTACTCCGAAATCTTTGTTGTC
GGAGGCTACAAGTGGCGAATCTTGATTTTCCCAAGGGGAAATAATGTTGAATTCTTATCT
ATGTATTTGGATGTGGCTGATTCTGGGGTATTGCCCTATGGGTGGACTAGATATGCACAA
TTCAGCCTCTCTGTGGTTAATCAAATTCACAACAAATTCACAATAAGAAAAGAAACACAA
CATCAGTTCTCTGCTCGAGAAAGTGATTGGGGTTTCACTTCATTTATGCCGTTGGGTGAA
CTCTACAACCACAGTAGAGGTTATCTTGTAAATGATACTTGTATAGTGGAAGCTGAAGTT
GCTGTATGTAAAGTTGTTGACTATTGGAGTTATGACTCTAAAAAGGAAACTGGCTATGTT
GGTCTTAAAAATCAAGGTGCTACCTGCTATATGAATTCTCTTCTTCAGACGCTGTACCAC
ATCCCATATTTCAGAAAGGCTGTTTATCACATGCCCACCACTGAGAATGATATGCCCTCA
GGAAGCATCCCTTTAGCTCTACAGTCACTCTTCTATAAGTTGCAGTATAATGACAGCAGT
GTCTCTACAAAGGAGCTCACAAAATCATTCGGGTGGGACATGCATGATTCATTTATGCAA
CATGATGTTCAAGAATTGAACAGAGTTCTTTCTGAGAAGTTGGAAGATAAGATGAAGGGA
ACTGTTGTAGAGGGCACAATACAACAATTGTTTGAAGGGCACCACATGAACTACATTGAG
TGCATCAATGTAGATTTCAAATCAACAAGAAAGGAATCCTTCTATGATCTCCAGCTTGAT
GTCAAAGGTTGTCAGGATGTCTACGCTTCATTTGACAAGTACGTAGAAGTGGAGCAATTG
GAAGGTGACAACAAGTATCATGCCGATAAGCATGGTCTGCAGGATGCAAAGAAAGGAGTT
CTTTTTATCGACTTCCCTCCTGTTCTGCAGCTTCAGCTAAAACGTTTTGAATATGATTTC
ATGCGTGACACGATGGTGAAGATAAATGATCGCTATGAATTCCCACTTCAATTGGACCTT
GATAGAGATGATGGAAAATATTTATCTCCTGATGCTGACAGGAATGTGCGTAACCTTTAT
ACCCTTCACAGCGTTCTTGTCCATAGCGGTGGTGTTCATGGTGGACATTATTATGCTTTC
ATACGACCTACCCTTTCTGATCAATGGTTCAAGTTTGATGATGAGCGTGTGACAAAAGAA
GATGCAAAGAGGGCACTGGAAGAACAATATGGTGGTGAGGAGGAGCTACCTCAGACAAAT
CCTGGCTTGAACAACACTCCCTTCAAGTTTACTAAATATTCAAATGCATACATGCTTGTG
TACATTCGTGAAAGCGACAAGGACAAAATTATTTGTAATGTGGATGAGAAAGATATAGCA
GAGCATCTTCGGATTAGATTGGAAAAGGACCGTGAAGAGAAGGAACGTCGGAAGAAGGAA
AAAGCTGAGGCACACCTCTATACCATAATCAAGGTTGCAAGGGATGATGACTTAAAAACT
CAGATAGGGAAAGACATATATTTTGATCTTGTTGACCATGATAAAGTCCCAAGCTTCCGT
ATCCAAAAGCAGATGGCCTTTGCTCAATTCAAGGAGGAGGTAGCAAAAGAGTTTGGTATT
CCCACACAGTTCCAACGATTTTGGCTGTGGGCCAAGCGACAAAACCATACTTACCGACCT
AACAGGCCATTGTGTCCTCAAGACGAAGCGCATACTGTTGGACAGCTAAAGGAATTGGTG
AACAAGGCCCACAACGCTGAATTGAAATTGTTCTTGGAAGTTGAACTTGGACTGGACCTT
AAACCTCTTCCTCTTCCAGACAAGACTAGAGAAGATATATTTCTTCTCTTCAAACTCTAT
GAACCTGAAAAGGAACAGCTACGGTATGTTGGTAGGCTCTTTGTAAAGGCTTCAGGAAGA
CCACAGGACATTCTGCCGAAGCTAAAGATGTTGGCAGGTTTTTCACAAGATGATGATATT
GAACTTTATGAGGAAATTAAGTTCGAACCCAATGTGATGTGTGAATACATTGATAACAGG
CTTCTGTTCCGATCTTGCCAGCTTGAAGATGGGGACATAATCTGTTTTCAAAAATCTTCA
AAGGCAGATAGTGCTGACCGATATCGATTTCCTGACGTACCATCCTTTTTGACGTATATA
CGTAACCGACAGAAAAAATGGACCGGCCTCGACCTTGGGATGGCTTCCAAGTGGAGGTAC
CTCGAAATGCCAGAGCTCTCTTCAACATGGCAGCAATCCTCATAA

Peptide Sequence

PEP ID

Zm00001d018859_P042
PEP Infomation

pep chromosome:B73_RefGen_v4:7:7543097:7554863:-1 gene:Zm00001d018859 transcript:Zm00001d018859_T042 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ubiquitin carboxyl-terminal hydrolase 13
Sequence

MTTSPPPAEQQHEEEEVLVPYGPHLELPNGAQPMEVVPAEPAATVENQQIEDPPISRFTW
TIENLSRVSTKKLYSEIFVVGGYKWRILIFPRGNNVEFLSMYLDVADSGVLPYGWTRYAQ
FSLSVVNQIHNKFTIRKETQHQFSARESDWGFTSFMPLGELYNHSRGYLVNDTCIVEAEV
AVCKVVDYWSYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDMPS
GSIPLALQSLFYKLQYNDSSVSTKELTKSFGWDMHDSFMQHDVQELNRVLSEKLEDKMKG
TVVEGTIQQLFEGHHMNYIECINVDFKSTRKESFYDLQLDVKGCQDVYASFDKYVEVEQL
EGDNKYHADKHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDL
DRDDGKYLSPDADRNVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWFKFDDERVTKE
DAKRALEEQYGGEEELPQTNPGLNNTPFKFTKYSNAYMLVYIRESDKDKIICNVDEKDIA
EHLRIRLEKDREEKERRKKEKAEAHLYTIIKVARDDDLKTQIGKDIYFDLVDHDKVPSFR
IQKQMAFAQFKEEVAKEFGIPTQFQRFWLWAKRQNHTYRPNRPLCPQDEAHTVGQLKELV
NKAHNAELKLFLEVELGLDLKPLPLPDKTREDIFLLFKLYEPEKEQLRYVGRLFVKASGR
PQDILPKLKMLAGFSQDDDIELYEEIKFEPNVMCEYIDNRLLFRSCQLEDGDIICFQKSS
KADSADRYRFPDVPSFLTYIRNRQKKWTGLDLGMASKWRYLEMPELSSTWQQSS

Transcript Sequence

Transcript ID

Zm00001d018859_T042
Transcript Infomation

cdna chromosome:B73_RefGen_v4:7:7543097:7554863:-1 gene:Zm00001d018859 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ubiquitin carboxyl-terminal hydrolase 13
Sequence

GGGTCCAAAACCTTCTCTCTCTCTCCTCTCCTCTTCCCTTTCTCTCTCCTCCGCCTCCCC
CGACTCGCGAGTCGCGATCTCCACCTCCCTCGACCACCACTCCCGTAACCCACTTCCGGG
TGGGCCCCACGTCGCCGCCGGCGACCAGCACCTCCCCTCCTTGACTCCCTCGCTACCCGC
CGCCCGCGTCCCGCCGGCCATGACGACCTCGCCGCCGCCCGCCGAGCAGCAGCATGAGGA
AGAGGAGGTGCTGGTGCCGTATGGCCCGCACCTGGAGTTGCCCAATGGAGCGCAGCCAAT
GGAAGTTGTGCCTGCTGAGCCAGCTGCTACTGTGGAAAACCAACAGATAGAGGATCCACC
AATATCGAGATTTACTTGGACCATTGAGAACCTATCAAGAGTTAGCACGAAGAAGCTGTA
CTCCGAAATCTTTGTTGTCGGAGGCTACAAGTGGCGAATCTTGATTTTCCCAAGGGGAAA
TAATGTTGAATTCTTATCTATGTATTTGGATGTGGCTGATTCTGGGGTATTGCCCTATGG
GTGGACTAGATATGCACAATTCAGCCTCTCTGTGGTTAATCAAATTCACAACAAATTCAC
AATAAGAAAAGAAACACAACATCAGTTCTCTGCTCGAGAAAGTGATTGGGGTTTCACTTC
ATTTATGCCGTTGGGTGAACTCTACAACCACAGTAGAGGTTATCTTGTAAATGATACTTG
TATAGTGGAAGCTGAAGTTGCTGTATGTAAAGTTGTTGACTATTGGAGTTATGACTCTAA
AAAGGAAACTGGCTATGTTGGTCTTAAAAATCAAGGTGCTACCTGCTATATGAATTCTCT
TCTTCAGACGCTGTACCACATCCCATATTTCAGAAAGGCTGTTTATCACATGCCCACCAC
TGAGAATGATATGCCCTCAGGAAGCATCCCTTTAGCTCTACAGTCACTCTTCTATAAGTT
GCAGTATAATGACAGCAGTGTCTCTACAAAGGAGCTCACAAAATCATTCGGGTGGGACAT
GCATGATTCATTTATGCAACATGATGTTCAAGAATTGAACAGAGTTCTTTCTGAGAAGTT
GGAAGATAAGATGAAGGGAACTGTTGTAGAGGGCACAATACAACAATTGTTTGAAGGGCA
CCACATGAACTACATTGAGTGCATCAATGTAGATTTCAAATCAACAAGAAAGGAATCCTT
CTATGATCTCCAGCTTGATGTCAAAGGTTGTCAGGATGTCTACGCTTCATTTGACAAGTA
CGTAGAAGTGGAGCAATTGGAAGGTGACAACAAGTATCATGCCGATAAGCATGGTCTGCA
GGATGCAAAGAAAGGAGTTCTTTTTATCGACTTCCCTCCTGTTCTGCAGCTTCAGCTAAA
ACGTTTTGAATATGATTTCATGCGTGACACGATGGTGAAGATAAATGATCGCTATGAATT
CCCACTTCAATTGGACCTTGATAGAGATGATGGAAAATATTTATCTCCTGATGCTGACAG
GAATGTGCGTAACCTTTATACCCTTCACAGCGTTCTTGTCCATAGCGGTGGTGTTCATGG
TGGACATTATTATGCTTTCATACGACCTACCCTTTCTGATCAATGGTTCAAGTTTGATGA
TGAGCGTGTGACAAAAGAAGATGCAAAGAGGGCACTGGAAGAACAATATGGTGGTGAGGA
GGAGCTACCTCAGACAAATCCTGGCTTGAACAACACTCCCTTCAAGTTTACTAAATATTC
AAATGCATACATGCTTGTGTACATTCGTGAAAGCGACAAGGACAAAATTATTTGTAATGT
GGATGAGAAAGATATAGCAGAGCATCTTCGGATTAGATTGGAAAAGGACCGTGAAGAGAA
GGAACGTCGGAAGAAGGAAAAAGCTGAGGCACACCTCTATACCATAATCAAGGTTGCAAG
GGATGATGACTTAAAAACTCAGATAGGGAAAGACATATATTTTGATCTTGTTGACCATGA
TAAAGTCCCAAGCTTCCGTATCCAAAAGCAGATGGCCTTTGCTCAATTCAAGGAGGAGGT
AGCAAAAGAGTTTGGTATTCCCACACAGTTCCAACGATTTTGGCTGTGGGCCAAGCGACA
AAACCATACTTACCGACCTAACAGGCCATTGTGTCCTCAAGACGAAGCGCATACTGTTGG
ACAGCTAAAGGAATTGGTGAACAAGGCCCACAACGCTGAATTGAAATTGTTCTTGGAAGT
TGAACTTGGACTGGACCTTAAACCTCTTCCTCTTCCAGACAAGACTAGAGAAGATATATT
TCTTCTCTTCAAACTCTATGAACCTGAAAAGGAACAGCTACGGTATGTTGGTAGGCTCTT
TGTAAAGGCTTCAGGAAGACCACAGGACATTCTGCCGAAGCTAAAGATGTTGGCAGGTTT
TTCACAAGATGATGATATTGAACTTTATGAGGAAATTAAGTTCGAACCCAATGTGATGTG
TGAATACATTGATAACAGGCTTCTGTTCCGATCTTGCCAGCTTGAAGATGGGGACATAAT
CTGTTTTCAAAAATCTTCAAAGGCAGATAGTGCTGACCGATATCGATTTCCTGACGTACC
ATCCTTTTTGACGTATATACGTAACCGACAGAAAAAATGGACCGGCCTCGACCTTGGGAT
GGCTTCCAAGTGGAGGTACCTCGAAATGCCAGAGCTCTCTTCAACATGGCAGCAATCCTC
ATAATTGGCAATGGTAAAAGAATTGATTCTGGAAAGACAGGTGGCTGGATGGAAAGAACT
TCGCTGAATTAGCACCCAATCTGTTGTCAACCATTGGCAAGCGAACAGTAAAAAAGGACA
GTTGCAGAAGTTTTGAGCAACAGAAGATGGGTGTCAGATATTAAAGGGGCTTTAACTATT
CAAGTTCTAGAGGAATATCTTATGATCTGGGACCATGTGGGAAGAATTAATGTACAACCT
GAGGTCCCTGACACTTTCAGATGGAAATTAACACAAACAGGGGATTACAGCAGCAAATCA
GCATGTACAGCTCTTTTCACTGGATCTATTCGTTATGCTCCCTGGAAAAAGATTTGGAAA
AGCTGGGCACCACTTCGATGCAGATTTTTCATTTGGTTGGTTTTCAAAAAAATGATGCTG
GACTGCAGACAAGTTGGCTAAAAGGGGGCTGCCCCATCCTAATGTTTTCTCCAGGCAGCT
TTGGTTTTATATTTTTCAGGCTCTAAAACTTACAGAGCTGGTATCTAACATAGCTGAACC
TTCCTTTCCTAATTGGTGGAGGAAAGTGGTCAAATTGGTTCCAAAGGAAAGAAGACAAGG
GCTGAACTCTTTAACCATTCTAACGACCTGGGAGATTTGGAAGCACAGGAATTCCTGTGT
CTTTGAGAATACATAACCTTGCATTGCTGTTCTGATGACAAGAATTGTGGAGGAATGTCG
ACTTTGGTGGTGGGATGGTGCCTCCAAACTGCATGATTTCTTGGTTTGGGCAAGGGCCAG
GGCAGAACAGACCCGAACTGCATGATTTTTGGTTTAGGCAAGGGTCAGGGATGAACAGAT
CCTGATGGCCTGACCCTTTTCTTTTTTGGTCTAGGTTTCACCCCTGTAACAGACTGAGTT
CTAGTAGCTCAGATCCTGTTTGCAGGGGTGCTGGTCTGGTGGTCTTGTTTTGTTTTTGTT
TGTTGTTTTTGCCTAAGTCTGTATCTAGACCCTCTTTTTCTTCTTAATGAAAGATCTCCT
GCGTGGTTC