Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d018819_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:7:6342456:6344361:1 gene:Zm00001d018819 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:nine-cis-epoxycarotenoid dioxygenase5 description: nine-cis-epoxycarotenoid dioxygenase5
Sequence	ATGGCGTCCTCCATCTCTGCTCCAGCTCCACCGGCGGCTCCGGCCACCGCGCCGGCTTCG GGCAGACCCAAGAAGCCGTCCCAGTTCAACCCCAGCACCGGCAAGACCAGGACCCCGGTC CCCGCGCGGCCAATGCGCGCCGCCGCTCCCAAGTGGAACCCGCTCCAGCGGCTCGCCGCG GCGGCGCTCGACGCGCTGGAGGAGGGGCTCGTCGCGGGCGTCCTCGAGCGCGCGCACCCG CTGCCACGGACCGCCGACCCGGCCGTCCAGATCGCCGGCAACTACGCGCCCGTCGGGGAG CGCCCGCCCACCGGCGAGCTGCCCGTGTCCGGCCGCGTCCCGGCGTGCCTCGACGGCGTG TACGTCCGCAACGGCGCCAACCCGCTCCACGCGCCGCGCGCGGGGCACCACCTCTTCGAC GGCGACGGCATGCTGCACGCCGTGCGGCTCCGCGGGGGCCGCGCCGAGTCGTACGCGTGC CGGTTCACGGAGACGGCGCGGCTCAGGCAGGAGCGCGCCATCGGCAGGGCCGTGTTCCCC AAGGCCATCGGCGAGCTGCACGGCCACTCGGGCGTGGCGCGCCTGCTCCTCTTCGGCGCC CGCTCCCTCTGCGGCGTGCTCGACGCGTCCCAGGGGATCGGGGTCGCCAACGCCGGCCTG GTGTACCACAACAACCGCCTCCTCGCCATGTCGGAGGACGACCTCCCCTACCACGTGCGC GTCACCGCCGACGGCGACCTCGAGACCGCCGGGCGCTACGACTTCGGCGGCCAGCTCGAC ACCGCCATGATCGCGCACCCCAAGCTGGACCCGGCCACCGGCGAGCTCTTCGCGCTCAGC TACAATGTCGTGTCCAAGCCGTTCCTCAAGTACTTCTACTTCACCGCCGACGGCCGCAAG TCCCCCGACGTCGAGATCCCCGTGGACGCGCCCACCATGATGCACGACTTCGCCGTCACC GAGAACCACGCCATCATCCCGGACCAGCAGATCGTGTTCAAGCTCCAGGAGATGGTGCTG GGCGGCTCCCCCGTGGTGTACGACAGGAACAAGACCGCGCGGTTCGGGGTGCTGCCGAAG CGCGCCACCGACGCGTCGCGGCTGCGGTGGGTGGACGTCCCCGACTGCTTCTGCTTCCAC CTCTGGAACGCGTGGGAGGACGAGGCCACGGGCGAGGTCGTGGTGATCGGGTCCTGCATG ACCCCCGCGGACGCCGTGTTCAACGAGTCCGCCGCCGGCGAGGAGAGCTTCCGCAGCGTG CTGTCGGAGATCCGGCTGGACCCGCGCACCGGCACGTCCTCGCGGCGCGCGGTCCTGAGC GACGCCGACCAGGTGAACCTGGAGGCCGGCATGGTGAACCGGCAGCTGCTGGGCAGGAGG ACGCGCTACGCCTACCTCGCCATCGCCGAGCCGTGGCCCAAGGTGTCGGGCTTCGCCAAG GTGGACCTCGAGGCCGGCACCGTCGACAAGTTCATCTACGGCGACGGCCGGTACGGCGGC GAGCCCTGCTTCGTGCCGCGCCCCGACGCCCCCGCGGGCGCCGCGGAGGACGACGGCTAC GTGCTGTGCTACGTGCACGACGAGGCCCGCGGTGCGTCGGAAATGCTCGTCGTCAACGCC CGCGACATGCGGGCCGAGGCCGCCGTCAAGCTGCCGGGCCGCGTCCCGTACGGGTTGCAC GGCACGTTCATCGCCGGCAAGGAGCTGCAGCGGCAGGCCTAG

Peptide Sequence

PEP ID	Zm00001d018819_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:7:6342456:6344361:1 gene:Zm00001d018819 transcript:Zm00001d018819_T001 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:nine-cis-epoxycarotenoid dioxygenase5 description: nine-cis-epoxycarotenoid dioxygenase5
Sequence	MASSISAPAPPAAPATAPASGRPKKPSQFNPSTGKTRTPVPARPMRAAAPKWNPLQRLAA AALDALEEGLVAGVLERAHPLPRTADPAVQIAGNYAPVGERPPTGELPVSGRVPACLDGV YVRNGANPLHAPRAGHHLFDGDGMLHAVRLRGGRAESYACRFTETARLRQERAIGRAVFP KAIGELHGHSGVARLLLFGARSLCGVLDASQGIGVANAGLVYHNNRLLAMSEDDLPYHVR VTADGDLETAGRYDFGGQLDTAMIAHPKLDPATGELFALSYNVVSKPFLKYFYFTADGRK SPDVEIPVDAPTMMHDFAVTENHAIIPDQQIVFKLQEMVLGGSPVVYDRNKTARFGVLPK RATDASRLRWVDVPDCFCFHLWNAWEDEATGEVVVIGSCMTPADAVFNESAAGEESFRSV LSEIRLDPRTGTSSRRAVLSDADQVNLEAGMVNRQLLGRRTRYAYLAIAEPWPKVSGFAK VDLEAGTVDKFIYGDGRYGGEPCFVPRPDAPAGAAEDDGYVLCYVHDEARGASEMLVVNA RDMRAEAAVKLPGRVPYGLHGTFIAGKELQRQA

Transcript Sequence

Transcript ID	Zm00001d018819_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:7:6342456:6344361:1 gene:Zm00001d018819 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:nine-cis-epoxycarotenoid dioxygenase5 description: nine-cis-epoxycarotenoid dioxygenase5
Sequence	CACCACACCGAAAACCCAACCCCAGCTCGCTCTTCTCTCCCTCACTCCAAGTCTCACCAT CCACACAGGCCAGCGCGCAAACGCCACAAAGCTAGCCTTTCTGCTCCCGCTCGATCAGCT GGCTCCGTTGATCACCGGGCCGGGCCACAACCCCCAGCTCTCTGACTGATTAGTTTCCGC TGCAATGGCGTCCTCCATCTCTGCTCCAGCTCCACCGGCGGCTCCGGCCACCGCGCCGGC TTCGGGCAGACCCAAGAAGCCGTCCCAGTTCAACCCCAGCACCGGCAAGACCAGGACCCC GGTCCCCGCGCGGCCAATGCGCGCCGCCGCTCCCAAGTGGAACCCGCTCCAGCGGCTCGC CGCGGCGGCGCTCGACGCGCTGGAGGAGGGGCTCGTCGCGGGCGTCCTCGAGCGCGCGCA CCCGCTGCCACGGACCGCCGACCCGGCCGTCCAGATCGCCGGCAACTACGCGCCCGTCGG GGAGCGCCCGCCCACCGGCGAGCTGCCCGTGTCCGGCCGCGTCCCGGCGTGCCTCGACGG CGTGTACGTCCGCAACGGCGCCAACCCGCTCCACGCGCCGCGCGCGGGGCACCACCTCTT CGACGGCGACGGCATGCTGCACGCCGTGCGGCTCCGCGGGGGCCGCGCCGAGTCGTACGC GTGCCGGTTCACGGAGACGGCGCGGCTCAGGCAGGAGCGCGCCATCGGCAGGGCCGTGTT CCCCAAGGCCATCGGCGAGCTGCACGGCCACTCGGGCGTGGCGCGCCTGCTCCTCTTCGG CGCCCGCTCCCTCTGCGGCGTGCTCGACGCGTCCCAGGGGATCGGGGTCGCCAACGCCGG CCTGGTGTACCACAACAACCGCCTCCTCGCCATGTCGGAGGACGACCTCCCCTACCACGT GCGCGTCACCGCCGACGGCGACCTCGAGACCGCCGGGCGCTACGACTTCGGCGGCCAGCT CGACACCGCCATGATCGCGCACCCCAAGCTGGACCCGGCCACCGGCGAGCTCTTCGCGCT CAGCTACAATGTCGTGTCCAAGCCGTTCCTCAAGTACTTCTACTTCACCGCCGACGGCCG CAAGTCCCCCGACGTCGAGATCCCCGTGGACGCGCCCACCATGATGCACGACTTCGCCGT CACCGAGAACCACGCCATCATCCCGGACCAGCAGATCGTGTTCAAGCTCCAGGAGATGGT GCTGGGCGGCTCCCCCGTGGTGTACGACAGGAACAAGACCGCGCGGTTCGGGGTGCTGCC GAAGCGCGCCACCGACGCGTCGCGGCTGCGGTGGGTGGACGTCCCCGACTGCTTCTGCTT CCACCTCTGGAACGCGTGGGAGGACGAGGCCACGGGCGAGGTCGTGGTGATCGGGTCCTG CATGACCCCCGCGGACGCCGTGTTCAACGAGTCCGCCGCCGGCGAGGAGAGCTTCCGCAG CGTGCTGTCGGAGATCCGGCTGGACCCGCGCACCGGCACGTCCTCGCGGCGCGCGGTCCT GAGCGACGCCGACCAGGTGAACCTGGAGGCCGGCATGGTGAACCGGCAGCTGCTGGGCAG GAGGACGCGCTACGCCTACCTCGCCATCGCCGAGCCGTGGCCCAAGGTGTCGGGCTTCGC CAAGGTGGACCTCGAGGCCGGCACCGTCGACAAGTTCATCTACGGCGACGGCCGGTACGG CGGCGAGCCCTGCTTCGTGCCGCGCCCCGACGCCCCCGCGGGCGCCGCGGAGGACGACGG CTACGTGCTGTGCTACGTGCACGACGAGGCCCGCGGTGCGTCGGAAATGCTCGTCGTCAA CGCCCGCGACATGCGGGCCGAGGCCGCCGTCAAGCTGCCGGGCCGCGTCCCGTACGGGTT GCACGGCACGTTCATCGCCGGCAAGGAGCTGCAGCGGCAGGCCTAG