Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d018742_T006
CDS Infomation

cds chromosome:B73_RefGen_v4:7:3845196:3851169:1 gene:Zm00001d018742 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:rough sheath1 description: rough sheath1
Sequence

ATGTCGGCAGCGGAGGCCGAGGCCATCAAGGCCAAGATCGTGGCGCACCCGCAGTACTCG
GCGCTCCTCGCCGCCTACCTCGACTGCCAGAAAGTACTTCGCTTGAGCTACCCCGACCCC
GGCTGGCGTGACGTGGGCGCGCCGCCGGACGTGCTGGAGAGGCTGACGGCCATGGCGGCA
AAGCTGGACGCGCGCCCGCCGGGCCGCCACGAGCCGCGCGACCCGGAGCTGGACCAGTTC
ATGGAGGCGTACTGTAACATGCTCGTCAAGTACCGGGAGGAGCTCACCCGGCCGATCGAC
GAGGCCATGGAGTTCCTCAAGCGGGTGGAGGCGCAGCTCGACTGCATCTCCGGCGGCGGC
GGCTCCTCCTCAGCGCGCCTCTCGCTCGCCGATGGTAAATCAGAAGGTGTTGGCTCTTCT
GAAGATGACATGGACCCGAATGGTCGCGAGAACGATCCGCCGGAGATTGACCCACGAGCG
GAGGACAAGGAGCTCAAGTACCAGCTGCTGAAGAAGTACAGTGGCTACCTGAGCAGCCTC
AGGCAGGAGTTTTCCAAGAAGAAGAAGAAAGGGAAGCTCCCAAAGGAGGCCAGGCAGAAA
CTCCTCCACTGGTGGGAGCTGCACTACAAGTGGCCGTACCCTTCAGAGACGGAGAAGATT
GCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAGATCAACAACTGGTTCATCAACCAG
AGGAAACGGCACTGGAAGCCATCGGAGGACATGCCTTTCGTGATGATGGAAGGCTTCCAC
CCGCAGAACGCCGCTGCTCTGTACATGGACGGGCCGTTCATGGCCGACGGCATGTATCGC
CTCGGTTCATGA

Peptide Sequence

PEP ID

Zm00001d018742_P006
PEP Infomation

pep chromosome:B73_RefGen_v4:7:3845196:3851169:1 gene:Zm00001d018742 transcript:Zm00001d018742_T006 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:rough sheath1 description: rough sheath1
Sequence

MSAAEAEAIKAKIVAHPQYSALLAAYLDCQKVLRLSYPDPGWRDVGAPPDVLERLTAMAA
KLDARPPGRHEPRDPELDQFMEAYCNMLVKYREELTRPIDEAMEFLKRVEAQLDCISGGG
GSSSARLSLADGKSEGVGSSEDDMDPNGRENDPPEIDPRAEDKELKYQLLKKYSGYLSSL
RQEFSKKKKKGKLPKEARQKLLHWWELHYKWPYPSETEKIALAESTGLDQKQINNWFINQ
RKRHWKPSEDMPFVMMEGFHPQNAAALYMDGPFMADGMYRLGS

Transcript Sequence

Transcript ID

Zm00001d018742_T006
Transcript Infomation

cdna chromosome:B73_RefGen_v4:7:3845196:3851169:1 gene:Zm00001d018742 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:rough sheath1 description: rough sheath1
Sequence

GCGAGAGGCAGGGAGTGCGCTCGACGGCCGCCGCCATTAGTGATTTAGTGTTGAGAGAGG
GAGAGAATCTAAAGTGACCGGACGCTGTCCTTCCTTGCTGATCGGCGACACGGTCCATCC
CTCCCTCGCTCGCTAGGGTTCCTTTTCGTCCATGGATCAGAGCTTCGGGAATCTCGGGGC
CGGAGCTGGGAGCAGCAGCGGGGGCTCCAACTCCAAGGCGGCGGCAGCCGCCGTGTCCTC
CTCGTCTTTCCTGCAGCTGCCGCTGTCGACGGCCAGCACCAGCAGCAGCAGCACCACCAC
CACTACGCCAGGCACGGCGCCGAGATGTCGGCAGCGGAGGCCGAGGCCATCAAGGCCAAG
ATCGTGGCGCACCCGCAGTACTCGGCGCTCCTCGCCGCCTACCTCGACTGCCAGAAAGTA
CTTCGCTTGAGCTACCCCGACCCCGGCTGGCGTGACGTGGGCGCGCCGCCGGACGTGCTG
GAGAGGCTGACGGCCATGGCGGCAAAGCTGGACGCGCGCCCGCCGGGCCGCCACGAGCCG
CGCGACCCGGAGCTGGACCAGTTCATGGAGGCGTACTGTAACATGCTCGTCAAGTACCGG
GAGGAGCTCACCCGGCCGATCGACGAGGCCATGGAGTTCCTCAAGCGGGTGGAGGCGCAG
CTCGACTGCATCTCCGGCGGCGGCGGCTCCTCCTCAGCGCGCCTCTCGCTCGCCGATGGT
AAATCAGAAGGTGTTGGCTCTTCTGAAGATGACATGGACCCGAATGGTCGCGAGAACGAT
CCGCCGGAGATTGACCCACGAGCGGAGGACAAGGAGCTCAAGTACCAGCTGCTGAAGAAG
TACAGTGGCTACCTGAGCAGCCTCAGGCAGGAGTTTTCCAAGAAGAAGAAGAAAGGGAAG
CTCCCAAAGGAGGCCAGGCAGAAACTCCTCCACTGGTGGGAGCTGCACTACAAGTGGCCG
TACCCTTCAGAGACGGAGAAGATTGCGCTCGCAGAATCAACGGGCCTAGACCAGAAGCAG
ATCAACAACTGGTTCATCAACCAGAGGAAACGGCACTGGAAGCCATCGGAGGACATGCCT
TTCGTGATGATGGAAGGCTTCCACCCGCAGAACGCCGCTGCTCTGTACATGGACGGGCCG
TTCATGGCCGACGGCATGTATCGCCTCGGTTCATGAACTACACACTTCCATGGACGACTG
TGGGGGCCTATCCAATCGTCGGACCGTGGGAGTATATTTCAGTGTTGCGGTGCAAGGACA
TTGTTGTGGAATTTTTGTTGCTGATTGCCAAGGGGTGGGTCGGTCGATGTAGCGTCTATG
CATGGCTTGTAGTTCTCCTGTAATGTTGTTGTTAATTTCCGCTTGGCGGCTTGTAATCTA
GGTGTATCTCTGGAACTTGAATCCTGGGTGATTAATCCGGCAAGCAGCTGCCTGTTTGTA
TGATTGTATGGTTCGGGTTGGTGGAACATGATGCATGCTAAGGCGTGGCCTGTCTGGATC
AAAAAAAAAGAAGATGTCTTTTGTACCAG