Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d018696_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:7:2698898:2701382:-1 gene:Zm00001d018696 gene_biotype:protein_coding transcript_biotype:protein_coding description:SKU5 similar 17
Sequence

ATGGCGGCACCCCCGCCCGCGCCGTTCCTCCTCCTGCTCGCCGTGGCAGCAGCGTCGCTC
GCCGGCGCCGACGACCCTTACCGCTACTTCACCTGGACCGTCACCTACGGGCCAATCAGC
CCGCTCGGCACCACGCAGCAGTTTTTTTCTTCTTCTCCCCTTCCGGTCCCCCAACTCCTC
CATGCTTTGCACCTGAGTCAGTTTTTCCCCCCTTCTTCTCCCCTTCCGGTCCCCCAACTC
CGCCAGGGCATCCTGATCAACGGCCAGTTCCCGGGCCCGCGCATCGACTGCGTGACGAAC
GACAACCTGGTGGTGAACGTGGTCAACAGCCTGGACGAGCCGTTCCTGCTCACCTGGAAC
GGCGTCAAGCAGCGCAAGAACTCGTGGCAGGACGGGGTAGCGGGCACCAACTGCGGCATC
CCGCCGGGCGCCAACTACACGTACCGCTTCCAGGCCAAGGACCAGATCGGAACCTTCTTC
TACTTCCCGTCCCTGGCCCTGCACCGCGCCGCGGGCGGCTTCGGCGCGCTCAACGTGTAC
CAGCGGCCCGCCATCCCGGTGCCCTACCCGCCGCCGGCCGGGGACTTCACGCTGCTCGTC
GGCGACTGGTACGCCGCCGCGTCCCCGCACGCGGACCTCCGGCGCGCGCTGGACGACGGC
GGCGGCGGAGCGCTCCCGCCGCCCGCCGCGCTGCTCATCAACGGCGCCGCCGCGTCCGGG
GCCGCGCCGTTCGTCGGCGCCCAAGGCGGGACGTACCTGTTCCGGGTGTCCAACATCGGG
CTCCGCGCCTCCGTCAACGTCCGGGTGCAGGGCCACGCGCTGCGGCTGGTGGAGGTGGAG
GGCACCCACCCGGTGCAGAGCGCCTACGACTCGCTCGACGTCCACGCGGGCCAGTCGCTG
GCGTTCCTCGTCACGCTGGACCAGGCGCCGCTGGACTACGCCGTGGTGGCGTCCACGCGC
TTCGCCGCCGCCGAGCTCACGGCCGTCGCCACGCTGCATTACGCGGGGGCCACGGCCCGC
GCGCCCGGCCCGCTGCCGCCGGCCCCGCCGCCCGGCTACGGCTGGTCGCTGGGCCAGGCG
CGGTCGTTCCGGTGGAACCTCACGGCCAGCGCGGCGCGCCCCAACCCGCAGGGCTCCTTC
CACTACGGCGCCATCCCGACGTCCAGGACGCTGGTGCTGGCCAGCTCCGCTTCCCTCGAC
GGCGCCGGGCGTAGGCGCTGCGCCGTCAACGCCGTGTCCTTCGTCGTGCCCGACACGCCG
CTCAAGCTCGCCGACAGATACGACATCGCCGGCGTCATCGACTGGGACGGCCTCCCCGCG
CGGCTCGACGGCGCCGCGGCGGTGCCGCGCGCCGGGACGCCCGTGCTCAGGCTCGGCCTG
CACGAGTTCGTGGAGGTGGTGTTCCAGAACACGGAGGAGGAGCTGCAGTCGTGGCACCTC
GATGGATACGACTTCTGGGTTGTAGGGTACGGCGATGGCCAGTGGAATGAGACGCAGCGG
CAGACGTACAACTTGGTGGACGCGCAGGCAAGACACACCGTTCAGGTGTACCCCAACGGG
TGGTCGGCGATCCTGGTGTCGCTGGACAACCAGGGGATGTGGAACCTGCGGTCGGCGATG
TGGGACCGGCAGTACCTCGGGCAGCAGCTCTACCTCAGGGTGTGGACGCCGGAGCAGAGC
CTCTCCAACGAGTACGCCATCCCCGCCAACGCCATCCTCTGCGGGAAGGCCGCCGCCCTC
CCACACTGA

Peptide Sequence

PEP ID

Zm00001d018696_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:7:2698898:2701382:-1 gene:Zm00001d018696 transcript:Zm00001d018696_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:SKU5 similar 17
Sequence

MAAPPPAPFLLLLAVAAASLAGADDPYRYFTWTVTYGPISPLGTTQQFFSSSPLPVPQLL
HALHLSQFFPPSSPLPVPQLRQGILINGQFPGPRIDCVTNDNLVVNVVNSLDEPFLLTWN
GVKQRKNSWQDGVAGTNCGIPPGANYTYRFQAKDQIGTFFYFPSLALHRAAGGFGALNVY
QRPAIPVPYPPPAGDFTLLVGDWYAAASPHADLRRALDDGGGGALPPPAALLINGAAASG
AAPFVGAQGGTYLFRVSNIGLRASVNVRVQGHALRLVEVEGTHPVQSAYDSLDVHAGQSL
AFLVTLDQAPLDYAVVASTRFAAAELTAVATLHYAGATARAPGPLPPAPPPGYGWSLGQA
RSFRWNLTASAARPNPQGSFHYGAIPTSRTLVLASSASLDGAGRRRCAVNAVSFVVPDTP
LKLADRYDIAGVIDWDGLPARLDGAAAVPRAGTPVLRLGLHEFVEVVFQNTEEELQSWHL
DGYDFWVVGYGDGQWNETQRQTYNLVDAQARHTVQVYPNGWSAILVSLDNQGMWNLRSAM
WDRQYLGQQLYLRVWTPEQSLSNEYAIPANAILCGKAAALPH

Transcript Sequence

Transcript ID

Zm00001d018696_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:7:2698898:2701382:-1 gene:Zm00001d018696 gene_biotype:protein_coding transcript_biotype:protein_coding description:SKU5 similar 17
Sequence

CCGAGACAGACAGGTTGTCCGACGCTGTCCCTCCCTGTCCCGCTCCCGGCGGCCGGTGCC
GGACGCGGAGACGCCTCTCTGGCTCCGCTCCTCGCCACCGCCCCCGCCGCTTTGCTTTAC
CACCTCCTCTCCTGTGCTGTGCATTCATCAAAGCTCCGAACGAATGCGCGTTTCTCTTTC
CGCATGCATTTGATTAATCTGCAACACATACCAGTCCAGCTATAAAGCCTGCCTCGCCTC
GTCTTCCCCACACTCCACTCCACTGCCTGCTGGCGGCTGCTGCTTCCTTCCAGATCTAGG
GGATCAAGCAACCAGCCTTCCCCGCGCCGCCAGCAATGGCGGCACCCCCGCCCGCGCCGT
TCCTCCTCCTGCTCGCCGTGGCAGCAGCGTCGCTCGCCGGCGCCGACGACCCTTACCGCT
ACTTCACCTGGACCGTCACCTACGGGCCAATCAGCCCGCTCGGCACCACGCAGCAGTTTT
TTTCTTCTTCTCCCCTTCCGGTCCCCCAACTCCTCCATGCTTTGCACCTGAGTCAGTTTT
TCCCCCCTTCTTCTCCCCTTCCGGTCCCCCAACTCCGCCAGGGCATCCTGATCAACGGCC
AGTTCCCGGGCCCGCGCATCGACTGCGTGACGAACGACAACCTGGTGGTGAACGTGGTCA
ACAGCCTGGACGAGCCGTTCCTGCTCACCTGGAACGGCGTCAAGCAGCGCAAGAACTCGT
GGCAGGACGGGGTAGCGGGCACCAACTGCGGCATCCCGCCGGGCGCCAACTACACGTACC
GCTTCCAGGCCAAGGACCAGATCGGAACCTTCTTCTACTTCCCGTCCCTGGCCCTGCACC
GCGCCGCGGGCGGCTTCGGCGCGCTCAACGTGTACCAGCGGCCCGCCATCCCGGTGCCCT
ACCCGCCGCCGGCCGGGGACTTCACGCTGCTCGTCGGCGACTGGTACGCCGCCGCGTCCC
CGCACGCGGACCTCCGGCGCGCGCTGGACGACGGCGGCGGCGGAGCGCTCCCGCCGCCCG
CCGCGCTGCTCATCAACGGCGCCGCCGCGTCCGGGGCCGCGCCGTTCGTCGGCGCCCAAG
GCGGGACGTACCTGTTCCGGGTGTCCAACATCGGGCTCCGCGCCTCCGTCAACGTCCGGG
TGCAGGGCCACGCGCTGCGGCTGGTGGAGGTGGAGGGCACCCACCCGGTGCAGAGCGCCT
ACGACTCGCTCGACGTCCACGCGGGCCAGTCGCTGGCGTTCCTCGTCACGCTGGACCAGG
CGCCGCTGGACTACGCCGTGGTGGCGTCCACGCGCTTCGCCGCCGCCGAGCTCACGGCCG
TCGCCACGCTGCATTACGCGGGGGCCACGGCCCGCGCGCCCGGCCCGCTGCCGCCGGCCC
CGCCGCCCGGCTACGGCTGGTCGCTGGGCCAGGCGCGGTCGTTCCGGTGGAACCTCACGG
CCAGCGCGGCGCGCCCCAACCCGCAGGGCTCCTTCCACTACGGCGCCATCCCGACGTCCA
GGACGCTGGTGCTGGCCAGCTCCGCTTCCCTCGACGGCGCCGGGCGTAGGCGCTGCGCCG
TCAACGCCGTGTCCTTCGTCGTGCCCGACACGCCGCTCAAGCTCGCCGACAGATACGACA
TCGCCGGCGTCATCGACTGGGACGGCCTCCCCGCGCGGCTCGACGGCGCCGCGGCGGTGC
CGCGCGCCGGGACGCCCGTGCTCAGGCTCGGCCTGCACGAGTTCGTGGAGGTGGTGTTCC
AGAACACGGAGGAGGAGCTGCAGTCGTGGCACCTCGATGGATACGACTTCTGGGTTGTAG
GGTACGGCGATGGCCAGTGGAATGAGACGCAGCGGCAGACGTACAACTTGGTGGACGCGC
AGGCAAGACACACCGTTCAGGTGTACCCCAACGGGTGGTCGGCGATCCTGGTGTCGCTGG
ACAACCAGGGGATGTGGAACCTGCGGTCGGCGATGTGGGACCGGCAGTACCTCGGGCAGC
AGCTCTACCTCAGGGTGTGGACGCCGGAGCAGAGCCTCTCCAACGAGTACGCCATCCCCG
CCAACGCCATCCTCTGCGGGAAGGCCGCCGCCCTCCCACACTGACACGACGACGTTCAGC
AGCCATACTACTGCCTGCTCCATTCGACCAACCAAGTGAAAGAAGAAGAGGAGAATCTAT
TTTTGTTGCTGCAAGAATTAATGTGAAAAAAAACACAATTACTGCCACTGGTATACGTAT
CTCCTAACTCCTAATTGTCCAGCAACAGTTACAGCGTTTTTTT