Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d018600_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:7:471985:474196:1 gene:Zm00001d018600 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGGCGCCGCCGCCCAAGCCAGCCGAATCTTCCACCAACAAGAAGAAGGTCACCCCCGCG
GAGGTCGCATTCCTCGTCGACCGCTACCTGGCCGAAAACGGATTCAACGCCGCCCTCGCC
GCGTTCCGCTCCGAAGCCGCGCACATCTACAGCCCCACCAAATACAGCAAGAAGACGCCC
AAGAGGCTCATCCCGCTCGCCGACATCCTCCACGACTACATCGCCCTCAAGGAGGCCCGC
GTCGCCATCGAATCCGCAATGCAGGCCATGCAATCTCTCGTTTCCACCTACTACGCATCC
GGCTCCTCGTCCGCTGCTCCGCCTCATATGAACATGAACATGAACATGATGATGCCTCCC
CTTCCCCCGCCTCACGCCGCCACCGGTGCCCAGCCGTCATCGCCGCCGCTCTTCTTCTAC
GCGCCGAATTCTTCGTCGCCTCCGTCACAAGGAACCGCCGGCCACGCCTCGCCTCTCGTT
CATCACTACGCTCACGCATCCGCCGCGGGCCTTGTCCACAACTCCTCCTCAGATCTGTCC
ACTCCAGCTCCCACCTCTCTGCCCACTAATAAAAAGAGGAAGGCTTCAGGGAAGACCGCC
GCCGCTTCAGCCTCCAAGAGATCCTGCATTGCTCCTAATACAACCACCGACGCAAAGGGT
AGAGCTGTACCCGCGGCGTTTCAACCGTCGAATCATCAGAAGAACATGGGTTCCGCTGCC
CAACCAACTTCAGCTCAACATTCAGCTCCACTCCAAACTTCATCTGTTGCAAAGAGCTTG
TTTGCGCCGCTCCCACCTCCGGCCCACTCTTCTCCCTACACGCCGCAGCAACAAGATCAG
CCTGCTGCTGCTTATCCGTCTGCAACTCCAGCGTGTGCCGTTGCCCAACAGGAAATCGGC
CCCTCCCAGTGCTCTATCGTTTCTTCTTCCAAGACCCTCATCGTCAGCCCTCTCAAAGGG
AGCGCGTACTATGCTGTCGAGAGGAGCTACCATCTCAGCTCCCCCTTGAAACCGACCGCC
CGCAGTTCCCCCTTGAAACCAACCACCCGCAAGTTGAACTTCGATTGCACCGAGCTAGGT
CCCTGTGAGCAGATTTGCGACAAGGCCTCTGCCTCTGCCTCCTCCGACGAAGACAAGCAA
TATGACTTTGACATGGATTTCACGAACTTCGATATATGTGATGGTGAATTTTCGTTTTCT
GAGCTCCTGCTTGACTTCGATCTTGACAATGAAGGTGTCCTGAACGCTTCCACAAGTGAT
CAAGTTCAAAGGCTAGAGCCTGCTGCTGCTGCTGCTAGTGGTCATATGGCAGCGGGTCCT
GTTCTACCTGATTCAGTGAAGCCAGTCGCAGCAGATTCTGCTCAGGAATTGAATCCCCAA
GGAGCGACCGCTGTTACTTCTGTCAGGGCTATTACGAAGAGGATAAAGATTGTGAGCCCT
GCCAAGGGCCGGGCAGCTTCTTAG

Peptide Sequence

PEP ID

Zm00001d018600_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:7:471985:474196:1 gene:Zm00001d018600 transcript:Zm00001d018600_T001 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MAPPPKPAESSTNKKKVTPAEVAFLVDRYLAENGFNAALAAFRSEAAHIYSPTKYSKKTP
KRLIPLADILHDYIALKEARVAIESAMQAMQSLVSTYYASGSSSAAPPHMNMNMNMMMPP
LPPPHAATGAQPSSPPLFFYAPNSSSPPSQGTAGHASPLVHHYAHASAAGLVHNSSSDLS
TPAPTSLPTNKKRKASGKTAAASASKRSCIAPNTTTDAKGRAVPAAFQPSNHQKNMGSAA
QPTSAQHSAPLQTSSVAKSLFAPLPPPAHSSPYTPQQQDQPAAAYPSATPACAVAQQEIG
PSQCSIVSSSKTLIVSPLKGSAYYAVERSYHLSSPLKPTARSSPLKPTTRKLNFDCTELG
PCEQICDKASASASSDEDKQYDFDMDFTNFDICDGEFSFSELLLDFDLDNEGVLNASTSD
QVQRLEPAAAAASGHMAAGPVLPDSVKPVAADSAQELNPQGATAVTSVRAITKRIKIVSP
AKGRAAS

Transcript Sequence

Transcript ID

Zm00001d018600_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:7:471985:474196:1 gene:Zm00001d018600 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

CCTGCTTCTGCTTCAGACGAGGCGAGATCCCCAATCCATCACCACATCACACTAGATCAC
CCAACCTCCCTCCACATCCATCTTGCAGCATCCGCCATGGCGCCGCCGCCCAAGCCAGCC
GAATCTTCCACCAACAAGAAGAAGGTCACCCCCGCGGAGGTCGCATTCCTCGTCGACCGC
TACCTGGCCGAAAACGGATTCAACGCCGCCCTCGCCGCGTTCCGCTCCGAAGCCGCGCAC
ATCTACAGCCCCACCAAATACAGCAAGAAGACGCCCAAGAGGCTCATCCCGCTCGCCGAC
ATCCTCCACGACTACATCGCCCTCAAGGAGGCCCGCGTCGCCATCGAATCCGCAATGCAG
GCCATGCAATCTCTCGTTTCCACCTACTACGCATCCGGCTCCTCGTCCGCTGCTCCGCCT
CATATGAACATGAACATGAACATGATGATGCCTCCCCTTCCCCCGCCTCACGCCGCCACC
GGTGCCCAGCCGTCATCGCCGCCGCTCTTCTTCTACGCGCCGAATTCTTCGTCGCCTCCG
TCACAAGGAACCGCCGGCCACGCCTCGCCTCTCGTTCATCACTACGCTCACGCATCCGCC
GCGGGCCTTGTCCACAACTCCTCCTCAGATCTGTCCACTCCAGCTCCCACCTCTCTGCCC
ACTAATAAAAAGAGGAAGGCTTCAGGGAAGACCGCCGCCGCTTCAGCCTCCAAGAGATCC
TGCATTGCTCCTAATACAACCACCGACGCAAAGGGTAGAGCTGTACCCGCGGCGTTTCAA
CCGTCGAATCATCAGAAGAACATGGGTTCCGCTGCCCAACCAACTTCAGCTCAACATTCA
GCTCCACTCCAAACTTCATCTGTTGCAAAGAGCTTGTTTGCGCCGCTCCCACCTCCGGCC
CACTCTTCTCCCTACACGCCGCAGCAACAAGATCAGCCTGCTGCTGCTTATCCGTCTGCA
ACTCCAGCGTGTGCCGTTGCCCAACAGGAAATCGGCCCCTCCCAGTGCTCTATCGTTTCT
TCTTCCAAGACCCTCATCGTCAGCCCTCTCAAAGGGAGCGCGTACTATGCTGTCGAGAGG
AGCTACCATCTCAGCTCCCCCTTGAAACCGACCGCCCGCAGTTCCCCCTTGAAACCAACC
ACCCGCAAGTTGAACTTCGATTGCACCGAGCTAGGTCCCTGTGAGCAGATTTGCGACAAG
GCCTCTGCCTCTGCCTCCTCCGACGAAGACAAGCAATATGACTTTGACATGGATTTCACG
AACTTCGATATATGTGATGGTGAATTTTCGTTTTCTGAGCTCCTGCTTGACTTCGATCTT
GACAATGAAGGTGTCCTGAACGCTTCCACAAGTGATCAAGTTCAAAGGCTAGAGCCTGCT
GCTGCTGCTGCTAGTGGTCATATGGCAGCGGGTCCTGTTCTACCTGATTCAGTGAAGCCA
GTCGCAGCAGATTCTGCTCAGGAATTGAATCCCCAAGGAGCGACCGCTGTTACTTCTGTC
AGGGCTATTACGAAGAGGATAAAGATTGTGAGCCCTGCCAAGGGCCGGGCAGCTTCTTAG
AGCAGCTAGCAGGTAGATTTTCAGATCTCGCCAAATCAGGTGGCATTCCATGACCAACTG
CCCTGCTCTGTCTGTCTGAGGGCATTTTCAATGTAGCATGCATGACTCTAATGTTATGTT
AGCATTTTATGTTCACGATGTAAAGGCTAATATCGCGTTACTAATTACTACTTTTCACAA
GTTTGCTGTGCTGC