Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d018595_T005
CDS Infomation

cds chromosome:B73_RefGen_v4:7:180295:183032:1 gene:Zm00001d018595 gene_biotype:protein_coding transcript_biotype:protein_coding description:Sulfoquinovosyl transferase SQD2
Sequence

ATGGCGGCGGCCGTCCTAGCGCCCAAGCCGCCTCCTCCGCTGCCTACCAGGGCCTTTCCT
TCCTCATCCCCCTCGCGGTTTGCCCCTGCCTTCATCTCCCCGCGTCATCCCCTGAGAAGA
TTGCTCCTCCGCCCCATTCCGTGCGCCTCATCGCCGTCTTCCGTCTTGATGCCGAACCCG
GACCTCGAGACTGAGCCTGCCCACGATGGAGATGGAGATGGAGATGAGGCGCCGCCGGAG
TCCAGGCCCCGCCGCATCGCCCTTTTCGTCGAGCCGTCTCCCTTCGCCTACGTCTCCGGC
TACAAGAACCGCTTCCAGAACTTCATCAAGTACCTACGGGAGATGGGCGACGAGGTGATT
GTGGTCACCACGCACGAGGGCGTGCCTCAGGAATTCCACGGAGCCAAGCTAATTGGCTCA
TGGAGCTTCCCTTGCCCCTGGTATCAAAAGGTTCCGCTGTCGCTGGCCCTCAGTCCTCGA
ATCATCGCAGAAGTTGCTAGATTCAAGCCTGACATTATTCACGCCTCTTCACCTGGGATA
ATGGTATTTGGCGCGCTTATCATAGCAAAGTTGCTCTGCGTCCCTCTGGTAATGTCATAC
CACACCCACGTTCCAATTTATATACCCAGATATACTTTCAGCTGGCTTGTCAAGCCCATG
TGGCTAATAATAAAATTCTTGCACCGAGCTGCAGACCTCACACTGGTACCATCTGTTGCT
ATCGGCAGGGATCTTCAAGCTGCTCGTGTTACAGCAGCCAATAAAATACGCCTTTGGAAC
AAGGGTGTTGACTCAGAAAGCTTCCATCCTCGTTTCCGCAACATGGAAATGCGTTCAAGG
CTAACGAATGGTGAACCAGAAAAGCCACTTGTATTTTATGTTGGACGCTTAGGAGTTGAG
AAAAGCTTGGATTTTCTTAAGAGAGTCATGGACCGACTTCCAGGAGCAAGGATTGCATTT
ATTGGAGACGGACCATTCAGAGCTGAGCTCGAGCAGATGTTCTCAGGTATGCCGGTGGTG
TTCACGGGCACGTTGCAAGGGGAGGAGCTATCACAGGCCTATGCCAGTGGGGATGTGTTT
GTGATGCCTTCCGAGTCAGAGACACTGGGGTTTGTGGTGCTGGAGGCCATGTCATCAGGA
GTTCCGGTAGTCGGGGCTCGCGCCGGAGGAATACCTGATATCATACCTGAGGATCAGGAG
GGGAGGACCAGCTTTTTGTACACACCAGGGGATGTGGATGACTGTGTTGGCAAGATCAAG
CGGCTCCTGTCGAGCGAGGAACTGAGGGAGGCCATGGGGAGAGCTGCCAGGAAGGAGATG
GAGAAGTTTGACTGGCGAGCGGCGACGAGGAAGATCCGCAACGAGCAGTACAGTGCTGCA
ATCTGGTTCTGGCGCAAGAAGAGGGCACAGGTGCTGCGGCCCCTCCAATGGGTGCTGCGG
CTGCTGAGGCGGACAATGCCAGGAGCTGCCGATGCCGCAGCGAAGCAATCCTAG

Peptide Sequence

PEP ID

Zm00001d018595_P005
PEP Infomation

pep chromosome:B73_RefGen_v4:7:180295:183032:1 gene:Zm00001d018595 transcript:Zm00001d018595_T005 gene_biotype:protein_coding transcript_biotype:protein_coding description:Sulfoquinovosyl transferase SQD2
Sequence

MAAAVLAPKPPPPLPTRAFPSSSPSRFAPAFISPRHPLRRLLLRPIPCASSPSSVLMPNP
DLETEPAHDGDGDGDEAPPESRPRRIALFVEPSPFAYVSGYKNRFQNFIKYLREMGDEVI
VVTTHEGVPQEFHGAKLIGSWSFPCPWYQKVPLSLALSPRIIAEVARFKPDIIHASSPGI
MVFGALIIAKLLCVPLVMSYHTHVPIYIPRYTFSWLVKPMWLIIKFLHRAADLTLVPSVA
IGRDLQAARVTAANKIRLWNKGVDSESFHPRFRNMEMRSRLTNGEPEKPLVFYVGRLGVE
KSLDFLKRVMDRLPGARIAFIGDGPFRAELEQMFSGMPVVFTGTLQGEELSQAYASGDVF
VMPSESETLGFVVLEAMSSGVPVVGARAGGIPDIIPEDQEGRTSFLYTPGDVDDCVGKIK
RLLSSEELREAMGRAARKEMEKFDWRAATRKIRNEQYSAAIWFWRKKRAQVLRPLQWVLR
LLRRTMPGAADAAAKQS

Transcript Sequence

Transcript ID

Zm00001d018595_T005
Transcript Infomation

cdna chromosome:B73_RefGen_v4:7:180295:183032:1 gene:Zm00001d018595 gene_biotype:protein_coding transcript_biotype:protein_coding description:Sulfoquinovosyl transferase SQD2
Sequence

GACCGAGACAGACACACACCAGAGGGAGAGGGAGACGGAGAGAAGGGCGAGCGGCACTAG
CAAGCATGGCGGCGGCCGTCCTAGCGCCCAAGCCGCCTCCTCCGCTGCCTACCAGGGCCT
TTCCTTCCTCATCCCCCTCGCGGTTTGCCCCTGCCTTCATCTCCCCGCGTCATCCCCTGA
GAAGATTGCTCCTCCGCCCCATTCCGTGCGCCTCATCGCCGTCTTCCGTCTTGATGCCGA
ACCCGGACCTCGAGACTGAGCCTGCCCACGATGGAGATGGAGATGGAGATGAGGCGCCGC
CGGAGTCCAGGCCCCGCCGCATCGCCCTTTTCGTCGAGCCGTCTCCCTTCGCCTACGTCT
CCGGCTACAAGAACCGCTTCCAGAACTTCATCAAGTACCTACGGGAGATGGGCGACGAGG
TGATTGTGGTCACCACGCACGAGGGCGTGCCTCAGGAATTCCACGGAGCCAAGCTAATTG
GCTCATGGAGCTTCCCTTGCCCCTGGTATCAAAAGGTTCCGCTGTCGCTGGCCCTCAGTC
CTCGAATCATCGCAGAAGTTGCTAGATTCAAGCCTGACATTATTCACGCCTCTTCACCTG
GGATAATGGTATTTGGCGCGCTTATCATAGCAAAGTTGCTCTGCGTCCCTCTGGTAATGT
CATACCACACCCACGTTCCAATTTATATACCCAGATATACTTTCAGCTGGCTTGTCAAGC
CCATGTGGCTAATAATAAAATTCTTGCACCGAGCTGCAGACCTCACACTGGTACCATCTG
TTGCTATCGGCAGGGATCTTCAAGCTGCTCGTGTTACAGCAGCCAATAAAATACGCCTTT
GGAACAAGGGTGTTGACTCAGAAAGCTTCCATCCTCGTTTCCGCAACATGGAAATGCGTT
CAAGGCTAACGAATGGTGAACCAGAAAAGCCACTTGTATTTTATGTTGGACGCTTAGGAG
TTGAGAAAAGCTTGGATTTTCTTAAGAGAGTCATGGACCGACTTCCAGGAGCAAGGATTG
CATTTATTGGAGACGGACCATTCAGAGCTGAGCTCGAGCAGATGTTCTCAGGTATGCCGG
TGGTGTTCACGGGCACGTTGCAAGGGGAGGAGCTATCACAGGCCTATGCCAGTGGGGATG
TGTTTGTGATGCCTTCCGAGTCAGAGACACTGGGGTTTGTGGTGCTGGAGGCCATGTCAT
CAGGAGTTCCGGTAGTCGGGGCTCGCGCCGGAGGAATACCTGATATCATACCTGAGGATC
AGGAGGGGAGGACCAGCTTTTTGTACACACCAGGGGATGTGGATGACTGTGTTGGCAAGA
TCAAGCGGCTCCTGTCGAGCGAGGAACTGAGGGAGGCCATGGGGAGAGCTGCCAGGAAGG
AGATGGAGAAGTTTGACTGGCGAGCGGCGACGAGGAAGATCCGCAACGAGCAGTACAGTG
CTGCAATCTGGTTCTGGCGCAAGAAGAGGGCACAGGTGCTGCGGCCCCTCCAATGGGTGC
TGCGGCTGCTGAGGCGGACAATGCCAGGAGCTGCCGATGCCGCAGCGAAGCAATCCTAGG
AGAGGGGGGCTACTATGGTTGATGGTCCTCTTTTTTCCCATTCCTTGTATTATCTCCGTT
TTCGAATATTTGTCGTCCGCTAGTTCATTTTTAACTAAACAGCGACAAATAAAAAAGAAC
GACGAGAGTATAAAATGGGCTAAGGAGGCCATGGCAGATGATTGGATATGTTTCAGGATT
AGAGGGGAGGAAGGTCAAGCTTCAACATTCCAATTCACTGAAGAATATATAATGTACGTT
TAGGACTGTTAGGTTGTAAATCGTCAAAGTGTCTATGTAATGCTTCTTCTTGGCATGCTA
CACTATATAGTACTAATATTGATCCTTTAACAG