Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d018535_T003
CDS Infomation

cds chromosome:B73_RefGen_v4:5:222626069:222630974:-1 gene:Zm00001d018535 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:brick1 description: brick1
Sequence

ATGCAACATGCTCGAAACAGAGAGCTCCGGGAAGAAGTTTATCGTGCTTATCTGACCCGC
GCCTCAAGCAGTGAACTTGATAACACCAATATCATCTGCCAAATTCTAAAGTTAAGGCTA
GAGAAGGCTAAACTTCTTGGCTACAAGAACTATGCTGAGGTAAGCATGGCTCAGAAAATG
GCAACTGTTGAGCGAGTAGAAGAGCTTCTCGAGAAGCTGCGTGCTGCTTCCTGGGATCAT
GCTGTCAAAGATATGGAAGATCTGAAAGTCTTTGCGAAAGATTCTGGTTCTCCTGAAGCT
AATGATTTGACTCACTGGGACCTTACCTTCTGGAGTGAACGACTGAGAGAGTCTAAATAT
GATATCAATGAGGAAGAGCTGCGCCCTTATTTTGCACTACCCAAGGTTATGGATGGCCTC
TTCACTCTGGCACATAAGCTTTTTGGAGTTACTGTTGAACCTGCAGATGGGCTGGCTCCG
ATCTGGCACAGTGATGTCAAATTTTATTGTGTCAAAGACTCTTCCAGTAGCCCTGTTGCT
TACTTTTACTTCGATCCTTATTCAAGACCATCTGAAAAGCGTGGAGGGGCTTGGATGAAT
GTAGTCTTTTCTCGAAGTCGCGTGCTAGCTCGCAATGGTTTGGCTGCTAGGCTGCCTGTT
GCCCATATAGTGTGCAATCAGACTCCACCAGTTGGCGAGAAGCCCAGTCTCATGACCTTC
CGTGAGGTTGAAACTGTGTTCCATGAATTTGGGCACGCCCTTCAGCACATGCTTACTAAA
CAAGATGAAGGCTTTGTTGCTGGCATTCGTGGAGTTGAATGGGATGCTGTAGAGTTACCC
TCCCAGTTCATGGAGAACTGGTGCTATCACAAGAATACTCTTTTGAGCATTGCAAAACAT
TATGAAACCGGTGAAACTCTTCCAGAGGAAATTTATGCGAAGCTTGTAGCTGCAAAGAAT
TTCCGTGCTGGCACCTTGAGCCTGCGTCAGATACGATTTGCCAGTGTAGATATGGAGCTT
CATACAAGTTATGACCCCAATGGCTCAGTGTCCATATATGATGTGGACCAAAGAGTTGCA
GAACGGACACAAGTTCTTGCTCCTCTGCCGGAGGACAGATTCCTGTGCAGCTTTAGCCAT
ATTTTTGCAGGTGGCTATGCTGCTGGATACTACAGTTACAAGTGGGCTGAAGTACTGTCA
GCTGATGCATTCTCAGCTTTTGAAGACGCTGGTTTGGATGATGAGAAGGTATGCTTCCGC
GCAATCGAGGAAACTGGCAGACGATTCAGAGACACTGTTCTTGCGCTTGGAGGTGGAAAG
TCTCCGCTTGAGGTGTTCGTTTCATTCCGAGGACGGGAGCCTTCGCCTGAACCACTTCTT
AGACAAAACGGCTTGCTTCCTGTTGCTGCCTAG

Peptide Sequence

PEP ID

Zm00001d018535_P003
PEP Infomation

pep chromosome:B73_RefGen_v4:5:222626069:222630974:-1 gene:Zm00001d018535 transcript:Zm00001d018535_T003 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:brick1 description: brick1
Sequence

MQHARNRELREEVYRAYLTRASSSELDNTNIICQILKLRLEKAKLLGYKNYAEVSMAQKM
ATVERVEELLEKLRAASWDHAVKDMEDLKVFAKDSGSPEANDLTHWDLTFWSERLRESKY
DINEEELRPYFALPKVMDGLFTLAHKLFGVTVEPADGLAPIWHSDVKFYCVKDSSSSPVA
YFYFDPYSRPSEKRGGAWMNVVFSRSRVLARNGLAARLPVAHIVCNQTPPVGEKPSLMTF
REVETVFHEFGHALQHMLTKQDEGFVAGIRGVEWDAVELPSQFMENWCYHKNTLLSIAKH
YETGETLPEEIYAKLVAAKNFRAGTLSLRQIRFASVDMELHTSYDPNGSVSIYDVDQRVA
ERTQVLAPLPEDRFLCSFSHIFAGGYAAGYYSYKWAEVLSADAFSAFEDAGLDDEKVCFR
AIEETGRRFRDTVLALGGGKSPLEVFVSFRGREPSPEPLLRQNGLLPVAA

Transcript Sequence

Transcript ID

Zm00001d018535_T003
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:222626069:222630974:-1 gene:Zm00001d018535 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:brick1 description: brick1
Sequence

ACCACCGCACGCCTCCCACTCGCCGTCTCCGCTCGCCTCCCAAACCCTACCAACACCACC
CGCCTCATCTTCGCCGGCCTACCTGCCTCCTCCCCGGTCCGCGCCTTCTGCCCCAGGGCG
CGCCCCTCCCCCTCCACTTGCGCCGCCTTCTCCTCCACCATGGCCGCCTCCGACAACCCC
CTCCTCGTCGCCGACTTCGACTTCCCGCCCTTCGACCGCGTCGAGCCCAGCCACGTCCGC
CCCGGCATCCACGAACTGCTAACACGACTCGAGGGCGAGCTTGAAGAGCTCGAGAAGGGC
ATCGAGCCCACGTGGGCGAAGCTGGTCGAGCCGCTAGAACGCATCACCGACAGGCTCGAG
GTGATCTGGGGCATGGTCGATCACCTCAAGTCCGTCAAGGACTCCGCTGATCTCCGCGCC
GCCGTAGAGGAAGTCCCGTAAAAGTCAGTTTCCAACTAAGGCTAGGACAGAGCAAGCCTA
TCTATGAAGCTTTCAAGGCCATCAGGAACTCTTCTAATTGGGACAGTCTCAGCGATGCTC
GCAAGCGTATAGTTGAAGCTCAAATAAAGGAAGCTGTTCTCAGTGGAGTTGCACTTGAGG
ATGAACAAAGGAAGAAATTTAACCAAATCGAACAAGAGCTTGAAAAACTGACACAAAAGT
TTAGTGAAAATGTGCTGGATGCCACAAAGAAATTCGAGAAGTTAATTACTGATAAGAAAG
AAATTGAGGGTTTACCTGCTACAGCCCTTGGTTTAGCAGCGCAGACTGCTGTGTCAAAGG
GCCATGAAAATGCTACAGCTGAAAATGGACCTTGGGTTATCACGTTGGATGCACCAAGCT
ATATTCCTGTTATGCAACATGCTCGAAACAGAGAGCTCCGGGAAGAAGTTTATCGTGCTT
ATCTGACCCGCGCCTCAAGCAGTGAACTTGATAACACCAATATCATCTGCCAAATTCTAA
AGTTAAGGCTAGAGAAGGCTAAACTTCTTGGCTACAAGAACTATGCTGAGGTAAGCATGG
CTCAGAAAATGGCAACTGTTGAGCGAGTAGAAGAGCTTCTCGAGAAGCTGCGTGCTGCTT
CCTGGGATCATGCTGTCAAAGATATGGAAGATCTGAAAGTCTTTGCGAAAGATTCTGGTT
CTCCTGAAGCTAATGATTTGACTCACTGGGACCTTACCTTCTGGAGTGAACGACTGAGAG
AGTCTAAATATGATATCAATGAGGAAGAGCTGCGCCCTTATTTTGCACTACCCAAGGTTA
TGGATGGCCTCTTCACTCTGGCACATAAGCTTTTTGGAGTTACTGTTGAACCTGCAGATG
GGCTGGCTCCGATCTGGCACAGTGATGTCAAATTTTATTGTGTCAAAGACTCTTCCAGTA
GCCCTGTTGCTTACTTTTACTTCGATCCTTATTCAAGACCATCTGAAAAGCGTGGAGGGG
CTTGGATGAATGTAGTCTTTTCTCGAAGTCGCGTGCTAGCTCGCAATGGTTTGGCTGCTA
GGCTGCCTGTTGCCCATATAGTGTGCAATCAGACTCCACCAGTTGGCGAGAAGCCCAGTC
TCATGACCTTCCGTGAGGTTGAAACTGTGTTCCATGAATTTGGGCACGCCCTTCAGCACA
TGCTTACTAAACAAGATGAAGGCTTTGTTGCTGGCATTCGTGGAGTTGAATGGGATGCTG
TAGAGTTACCCTCCCAGTTCATGGAGAACTGGTGCTATCACAAGAATACTCTTTTGAGCA
TTGCAAAACATTATGAAACCGGTGAAACTCTTCCAGAGGAAATTTATGCGAAGCTTGTAG
CTGCAAAGAATTTCCGTGCTGGCACCTTGAGCCTGCGTCAGATACGATTTGCCAGTGTAG
ATATGGAGCTTCATACAAGTTATGACCCCAATGGCTCAGTGTCCATATATGATGTGGACC
AAAGAGTTGCAGAACGGACACAAGTTCTTGCTCCTCTGCCGGAGGACAGATTCCTGTGCA
GCTTTAGCCATATTTTTGCAGGTGGCTATGCTGCTGGATACTACAGTTACAAGTGGGCTG
AAGTACTGTCAGCTGATGCATTCTCAGCTTTTGAAGACGCTGGTTTGGATGATGAGAAGG
TATGCTTCCGCGCAATCGAGGAAACTGGCAGACGATTCAGAGACACTGTTCTTGCGCTTG
GAGGTGGAAAGTCTCCGCTTGAGGTGTTCGTTTCATTCCGAGGACGGGAGCCTTCGCCTG
AACCACTTCTTAGACAAAACGGCTTGCTTCCTGTTGCTGCCTAGTGCCCCAAAGATTTCT
CTGTTATTTATGCTTAAACAGGGACCATTTTCATCCGGTCAATTATTTGATGAAGATAGA
CATTTCACCCTTGTTTGTTTACCCTCCTCTAGATTATTAAATAAGTTAGAAGACAAACAA
ACAACATATATTATTAATGTATGTGTTTTTTATATGTGTCTAGATTCATCGTCTGCTATT
TGAATATAGACATAAAAATGAAATGAATACCAGTTTTTT