Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d018482_T004
CDS Infomation

cds chromosome:B73_RefGen_v4:5:221645398:221649770:1 gene:Zm00001d018482 gene_biotype:protein_coding transcript_biotype:protein_coding description:Homeodomain
Sequence

ATGAGCACCGCCAAGGTCATGATAACATACAAGAGGAAGCGTGCTGCCACACATGCCCAT
ACAGAAGACGACACAGTTCTTGACTCATCTCCTGCTGCCTCAAGCAATGTGGCTGTCAGC
AGTCTACAACTTAAGCCTGAGGGCCCTGCTGAGACTGCCGTGATAAATGAATATAATCAT
ATTACTCCTAAAATGCAGCAGTCTTTCTCCACGTTTCAACAAAACATCAAAGAAGAACGT
GAACCAGAGAAAGGACATGATCAGCTATATGAATCATCACCGTGGAAAGAACAACCTGAG
ATTTGTTCTGCCACTATTGCCTCAACCGCAGAGGCGCATAGCAATAAATCACAATGCATT
GATGGCACAAATAGTCAAACCCCTGTTTCAAGTTCTCTGTGTGGCAACATGCTTGCTGAT
AGGATGATTAACCAGACAAAAGATTCAAATATCTCTGCCCCTGTGGAAATAAATTCTCCT
ACGGGGATGGAAAATGCTGTCGCCCCTGGCCAATGTAAGAGCAGGTTTAGTCCTCTGCTC
ACCTTTCGCAGGCGAGTTAAGAAGAAAACAAATTTGGATGAACCAGCAGAAGAAATTTGT
TCACTTGACAACGACAAACAGTGTTCAACACTGACATGCAGCCCACCACGCTCATCACAG
GATGCTACATCATTACTAAAACATACTGCTCCAAACCCTTTGGATATTGAGGATAAGGTA
GGTAGATTGAAAAATACTGGACCTTCTACAGAAGCTGAACACTCACCTGAACAAGAAAGT
TCCCACGTCGTAAAATCCTCAGTTCAACATGTGGTTCCACAGATTGCTCTAGATGTAAAC
CAAAACATAATTCTGGAAGATGATGTTACACCAATGTCGAACCAAAAGATGTCCTTGGAA
GATGATGTTACACCAATGTCGAAGTTCACTGGTGTGCAAGAGGTCAGTGGGCAAGATACG
CCAGTGGAGGACTTCAACAGAACATCACCAAATACTATTGAAGTGCCAAAAGTTATTGAT
TTGCAGGGGAAGGGACATTGTACTGGGGAAACTACTTCTCTGCAGTCTCCAAGACAAAAA
GTTGATGCCAGTTGGTTGAAACGGACCAATAAATCTGTGGCAGAAGATGTTCCAGAATCT
CAAGGTTCAACAAAAAATATTCCAATAATTCTCTTGGATGATGATAATGATGATAGGGGC
AAGGAGCTCGAAAATTCAGAGGCCCTCGATCAAGGGCTCCATAGTCAAAACAAAAGAACT
TTTGGGAAGATTGACCTGAACTGTACTGAATTAAGACAACAGGGACTTCTCTGTTTAGAT
GACTCAACAATTCAAAGGCTGCCAGATCTGGATCTAGCTGTCAATGCTCGAAAGCAAATG
TCTCGACCGATTGAAAGGCTGTTTTTCACAGAGGAGAAAGATACCATCCGTGGCAAACAA
GAGCATCATGAAGAAAGCTCAACCATGCACGCCCCATACTCAAATTTCTTTGATCTGGGT
CCACCGTGGAACACCGGGAGTTTGAAGGGACCAAAAGGCTTGCCTTCAGAAGTAAAGTTT
GGAATAATGGACAGGGCTCCTGAGTTCAGTCTAGACCTCAGGCTGGATAGTTTCACAGAC
AACAACAGTGTGGCTGCCCTGAGGAGCGACAAGTTGTTTCTCGGAAGCACCTCCAGCACA
TCTCGTAAGTTAACAGAAAAGCTTGGCATGTACTCCTACAAGAGGCAGTCGGCTCCGTGG
TCAGAAGAAGAGCTGGACTTTCTTTGGATCGGGGTTAGGAGGTACGGCGTGAATAACTGG
AATGCAATGCTGAGGGACAGTCGGCTGCGGTTTTCAATCTCAAGGATGCCCGAGGACCTT
GCTAAGCAATGGGACAAGGAGCAGAAGAAACTTGTGGGTCCTGCGCAAGCTGTTGGTTAT
CTTGGTAGAGCTTCGTGCTCTGGATGCTCAAAGTCTGCATCTGTCGGGGCCCAAGCCCAA
ACGGACCTTTCATTGGGCGAATATTACCTTGGTAGAGCTTCGTGCTCTGGATGCTCCAAG
TCTTCATTTCTCGGGGCCCAGACGGACCTTTCATTGGGCGACGTCTACCTTCGCAGTGGC
CGTGCTCCAGAGAGAGGCCACCAGCATCATTTACCAACAAGCCTGGGCGTGGGCGGCTTC
CCTGGGGCTTCTTCATCGTATGGAAGAAGTGGCGGCAGGCGCAGAAGGGCGTCCAAGTCG
TACTACTACGAGAACAAGTCGGCTTGGTTCCAGGAGCCACCATCGGACAGGGTGCCCCAG
CAACCCGGCGGCCGAATGGGCCCTGAGATGTGGCCGAGCATCATGGTGGTGCCACCGCCA
ACGGCAGATCCACCGAGGGACGACGACGTGAAGCCCCATGTCCTCCTCCCTGATGCTACC
CTGAAGCGCGCGATAAGGAGGAGTGCGGACTGGGGGTCGTTCAGCAGGAGGCTGTTCCTG
TCCGGCGATCTCAACGGGGGGGCTGCAGGCGCCCCAGTACCAAGCGACACCGGCGCGTCA
TCCGAAGAGACAGTGTCTGACAGCTGA

Peptide Sequence

PEP ID

Zm00001d018482_P004
PEP Infomation

pep chromosome:B73_RefGen_v4:5:221645398:221649770:1 gene:Zm00001d018482 transcript:Zm00001d018482_T004 gene_biotype:protein_coding transcript_biotype:protein_coding description:Homeodomain
Sequence

MSTAKVMITYKRKRAATHAHTEDDTVLDSSPAASSNVAVSSLQLKPEGPAETAVINEYNH
ITPKMQQSFSTFQQNIKEEREPEKGHDQLYESSPWKEQPEICSATIASTAEAHSNKSQCI
DGTNSQTPVSSSLCGNMLADRMINQTKDSNISAPVEINSPTGMENAVAPGQCKSRFSPLL
TFRRRVKKKTNLDEPAEEICSLDNDKQCSTLTCSPPRSSQDATSLLKHTAPNPLDIEDKV
GRLKNTGPSTEAEHSPEQESSHVVKSSVQHVVPQIALDVNQNIILEDDVTPMSNQKMSLE
DDVTPMSKFTGVQEVSGQDTPVEDFNRTSPNTIEVPKVIDLQGKGHCTGETTSLQSPRQK
VDASWLKRTNKSVAEDVPESQGSTKNIPIILLDDDNDDRGKELENSEALDQGLHSQNKRT
FGKIDLNCTELRQQGLLCLDDSTIQRLPDLDLAVNARKQMSRPIERLFFTEEKDTIRGKQ
EHHEESSTMHAPYSNFFDLGPPWNTGSLKGPKGLPSEVKFGIMDRAPEFSLDLRLDSFTD
NNSVAALRSDKLFLGSTSSTSRKLTEKLGMYSYKRQSAPWSEEELDFLWIGVRRYGVNNW
NAMLRDSRLRFSISRMPEDLAKQWDKEQKKLVGPAQAVGYLGRASCSGCSKSASVGAQAQ
TDLSLGEYYLGRASCSGCSKSSFLGAQTDLSLGDVYLRSGRAPERGHQHHLPTSLGVGGF
PGASSSYGRSGGRRRRASKSYYYENKSAWFQEPPSDRVPQQPGGRMGPEMWPSIMVVPPP
TADPPRDDDVKPHVLLPDATLKRAIRRSADWGSFSRRLFLSGDLNGGAAGAPVPSDTGAS
SEETVSDS

Transcript Sequence

Transcript ID

Zm00001d018482_T004
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:221645398:221649770:1 gene:Zm00001d018482 gene_biotype:protein_coding transcript_biotype:protein_coding description:Homeodomain
Sequence

GCAGTTAAAGCAGTTGAAAACATTTCCGATACAGCTGGCAAGCTTTACTTCCGATAACAT
TTGTGCTTATCAGGATGAGCACCGCCAAGGTCATGATAACATACAAGAGGAAGCGTGCTG
CCACACATGCCCATACAGAAGACGACACAGTTCTTGACTCATCTCCTGCTGCCTCAAGCA
ATGTGGCTGTCAGCAGTCTACAACTTAAGCCTGAGGGCCCTGCTGAGACTGCCGTGATAA
ATGAATATAATCATATTACTCCTAAAATGCAGCAGTCTTTCTCCACGTTTCAACAAAACA
TCAAAGAAGAACGTGAACCAGAGAAAGGACATGATCAGCTATATGAATCATCACCGTGGA
AAGAACAACCTGAGATTTGTTCTGCCACTATTGCCTCAACCGCAGAGGCGCATAGCAATA
AATCACAATGCATTGATGGCACAAATAGTCAAACCCCTGTTTCAAGTTCTCTGTGTGGCA
ACATGCTTGCTGATAGGATGATTAACCAGACAAAAGATTCAAATATCTCTGCCCCTGTGG
AAATAAATTCTCCTACGGGGATGGAAAATGCTGTCGCCCCTGGCCAATGTAAGAGCAGGT
TTAGTCCTCTGCTCACCTTTCGCAGGCGAGTTAAGAAGAAAACAAATTTGGATGAACCAG
CAGAAGAAATTTGTTCACTTGACAACGACAAACAGTGTTCAACACTGACATGCAGCCCAC
CACGCTCATCACAGGATGCTACATCATTACTAAAACATACTGCTCCAAACCCTTTGGATA
TTGAGGATAAGGTAGGTAGATTGAAAAATACTGGACCTTCTACAGAAGCTGAACACTCAC
CTGAACAAGAAAGTTCCCACGTCGTAAAATCCTCAGTTCAACATGTGGTTCCACAGATTG
CTCTAGATGTAAACCAAAACATAATTCTGGAAGATGATGTTACACCAATGTCGAACCAAA
AGATGTCCTTGGAAGATGATGTTACACCAATGTCGAAGTTCACTGGTGTGCAAGAGGTCA
GTGGGCAAGATACGCCAGTGGAGGACTTCAACAGAACATCACCAAATACTATTGAAGTGC
CAAAAGTTATTGATTTGCAGGGGAAGGGACATTGTACTGGGGAAACTACTTCTCTGCAGT
CTCCAAGACAAAAAGTTGATGCCAGTTGGTTGAAACGGACCAATAAATCTGTGGCAGAAG
ATGTTCCAGAATCTCAAGGTTCAACAAAAAATATTCCAATAATTCTCTTGGATGATGATA
ATGATGATAGGGGCAAGGAGCTCGAAAATTCAGAGGCCCTCGATCAAGGGCTCCATAGTC
AAAACAAAAGAACTTTTGGGAAGATTGACCTGAACTGTACTGAATTAAGACAACAGGGAC
TTCTCTGTTTAGATGACTCAACAATTCAAAGGCTGCCAGATCTGGATCTAGCTGTCAATG
CTCGAAAGCAAATGTCTCGACCGATTGAAAGGCTGTTTTTCACAGAGGAGAAAGATACCA
TCCGTGGCAAACAAGAGCATCATGAAGAAAGCTCAACCATGCACGCCCCATACTCAAATT
TCTTTGATCTGGGTCCACCGTGGAACACCGGGAGTTTGAAGGGACCAAAAGGCTTGCCTT
CAGAAGTAAAGTTTGGAATAATGGACAGGGCTCCTGAGTTCAGTCTAGACCTCAGGCTGG
ATAGTTTCACAGACAACAACAGTGTGGCTGCCCTGAGGAGCGACAAGTTGTTTCTCGGAA
GCACCTCCAGCACATCTCGTAAGTTAACAGAAAAGCTTGGCATGTACTCCTACAAGAGGC
AGTCGGCTCCGTGGTCAGAAGAAGAGCTGGACTTTCTTTGGATCGGGGTTAGGAGGTACG
GCGTGAATAACTGGAATGCAATGCTGAGGGACAGTCGGCTGCGGTTTTCAATCTCAAGGA
TGCCCGAGGACCTTGCTAAGCAATGGGACAAGGAGCAGAAGAAACTTGTGGGTCCTGCGC
AAGCTGTTGGTTATCTTGGTAGAGCTTCGTGCTCTGGATGCTCAAAGTCTGCATCTGTCG
GGGCCCAAGCCCAAACGGACCTTTCATTGGGCGAATATTACCTTGGTAGAGCTTCGTGCT
CTGGATGCTCCAAGTCTTCATTTCTCGGGGCCCAGACGGACCTTTCATTGGGCGACGTCT
ACCTTCGCAGTGGCCGTGCTCCAGAGAGAGGCCACCAGCATCATTTACCAACAAGCCTGG
GCGTGGGCGGCTTCCCTGGGGCTTCTTCATCGTATGGAAGAAGTGGCGGCAGGCGCAGAA
GGGCGTCCAAGTCGTACTACTACGAGAACAAGTCGGCTTGGTTCCAGGAGCCACCATCGG
ACAGGGTGCCCCAGCAACCCGGCGGCCGAATGGGCCCTGAGATGTGGCCGAGCATCATGG
TGGTGCCACCGCCAACGGCAGATCCACCGAGGGACGACGACGTGAAGCCCCATGTCCTCC
TCCCTGATGCTACCCTGAAGCGCGCGATAAGGAGGAGTGCGGACTGGGGGTCGTTCAGCA
GGAGGCTGTTCCTGTCCGGCGATCTCAACGGGGGGGCTGCAGGCGCCCCAGTACCAAGCG
ACACCGGCGCGTCATCCGAAGAGACAGTGTCTGACAGCTGAGCTTCAGTTTATTTGACAT
GTCCCATTCCCATTCCCATTCTTATTGGATGTTGATGAAGCTGCTGGCATGTTCTCTGTA
ATGTCATGGTTGCCTAG