Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d018382_T045
CDS Infomation	cds chromosome:B73_RefGen_v4:5:219610343:219617264:-1 gene:Zm00001d018382 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:vacuolar protein sorting2 description:protein kinase family protein / WD-40 repeat family protein
Sequence	ATGGGGAATAAGATCGCGCGGACGACGCAGGCGTCGGCGACGGAGTACTACCTCCACGAC CTGCCGTCCACCTACAATCTCGTGCTCCTCGACGTCGTCAGCCGCGGCCGCTTCCTCAAG TCCGTCCGCTGCAAGCACGACGAGGGGTTGCTCCTCGTCAAGGTCTACTTTAAGCGCGCC GGCGAGTCCATAGACCTCAAGGAGCACGAGCGGAGGCTGGAGCGGATTAGGAACGCGTTC AAGGGGATCGAGGGGTCCCACGTATGGCCCTTCCAGGTTTGGCTGCAAACAGATAAGGCA GCATATCTCTTGAGACAATACTTCTTCAGCAACTTGCAAGATCGGTTGAGTACACGCCCT TTCCTCAGTCAGGTTGCAAAGAAATGGCTTGCCTTTCAGTTAATTCATGCAGTGGAACAG AGCCATAGTAAGGGAATTTGCCATGGTGACATAAAATGTGAAAATGTGCTCGTTACTTCT TGGAATTGGCTATATCTTGCGGACTTTGCATCATTCAAGCCAACGTATATCCCGGATGAT GACCCGTCTGATTTCTCATTCTACTTTGACACTGGAGGAAGACGACGATGCTATCTAGCA CCTGAAAGATTCTATGAAAGTGGTGGTGAATCCCAAGTTGCAGCAGACGCACCTCTGCAA CCATCTATGGATATATTTTCTCTTGGGTGTGTTCTTGCTGAACTTTTCCTTGAAGGCCAG CCACTTTTTGAGCTTTCTCAACTTCTGGCTTACCGGCGTGGTCAATATGACCCCATACAT ACCCTAGAAAAGATACAAGATACTGGTATCCGTGACATGATACTTCACATGATCCAGTTG GACCCCAAAAAAAGGGTACCATGTCGAAGCTATCTGCAGAAATATGAATCTGTTGTGTTC CCATTTTATTTTTCAAAATTTCTGCACAAGTTCTTCTCGGATATCGTTCCACTTGATTCC GATGCTAGGGTTGAGAAGACTCAAGAAAATTTTGGAAAGATACAGGAAATAATGATGGGT AGTTCAACAATTGAACAAATTGAGAGGTCTACATCGTGTGAGCATAGTGAACCATCTGGG AGAAAAGGCATGGAAGGGGAAATTTTAAACTCGCCAGGAAATTATAGAAATAGCACATCT GTATTTAAGAAAAATACTCCTGTAGACCATCAACATATTATTGGAGATATCAATTTCCTC CTCAAAGAAGTGGAGGGCAGGAGTAACAACACAAGCACAAAGGTCACAAAAGACACTTAT CATTTTGTTGCACCGAGCATTACCTGTGCAAATGGTGTTCAGTCCTCTCATCTAGTTAAT CCAGCAGGAAGACAAATTGGAACTGGTTTGATGGGCCACAAACATGTTGTATCTCATGTG AAGATCTCAAAGAGTAACATACGCTCCTTGGTGGCTACTTATGATGATCAATCAGATACC TATAGTTTTGATATTTTTCAGCAGACAGACTCCAAGGTGAGCTGTGAAGGCATGGTCTTG CTTGCCTCATTACTTTGCTCATGCATACGCAGTGTGAAAAAACCTGAGCTAAGAAGGGCC AGCCTCATTCTTCTGAAGTTCTCGTCCACATACATAGATGATGATAGTCGCCTACAGCTA GTGGTTCCCTATGTGATTGCGATGCTTTCAGATCCGTCTGCCATTGTCCGCTGTGCTGCT TTGGAAACCCTATGTGATGTTCTTTGTCTTGTGCAAGATTTCCCTATCAGTGATGCTGTT ATATTCCCTGAGTATATCCTCCCAATGCTCTCTTTGCTCCCTGATGATACGGAAGAGAGT GTTAGGGTTTGCTATGCTAGCAATATTCATAAGCTGGCTTTAACAGCTTATAGGTTCCTA CTTCGTTCTCGTAGCATTGCAGATATTCGACCTCTGGATGAATCAGTGGTAGCTCACAGA TCCCAATCTGCAGATTCACCAGCGAAGAGGCAAGATAATTTTTTTCGCCAGCTTGCAGAA CTGAGGAAATCTATTTATGAGATAGTGCAAGATTTGGTGATGGGACAAAAGCAGACACCT AATACCCGTAGAGCTCTTCTGCAGGATATAGGTTATTTGTGTTACTTCTTTGGGCACAAA CAAAGTAACGATTTTCTTCTTCCTATACTTCCAGCATTTCTAAATGATCATGATGAGCAG CTCCGTGCAGTTTTCTTTGGCCAGATTGTCTATGTTTGCTATTTTATTGGAGCAAGAAGT GTTGAGGAATATCTTCTGCCATATCTTGAACAGGCACTAAGTGATGACATGGAGGCTGTC CTTGTAAATGCACTTGATTGCTTGACCATGATGTGCAGAAGTGGTTATTTGAGGAAAAGA GTAATTGTTGGTCTATTGGTAAAGATTCTCCCCCTGCTCCGGTATCCAATCAATTGGGTT AAACAGTCTGCTGTAAGATTTGTTGCTGCCTGCAGCGAGAGCTTAGGATCTGTAGATACT TATGTGTATCTTTCTCCTCATCTAAGGCAGTTCCTACACATGGAGCCACCTTCATTGGCC TCTGAAACTGCTCTTCTTTCATGTCTTAAGCCTCCACTACCAAAATCAATCTTCTATGAA GGTTTAGAGCATGCTCAGGACATTGGAGACATTTTACTGAAGAGCAGTGGCAAGAAAGAA CAGATAGTACATGGTGGAAGATATCCTGGTACAGCACAAAGTGGATCCTTGGCCAACCTT GAAGATATCCTGCGACCGAAAGGCCCTAATATTTCCAGCAGCATGTCCTTGTATGTCAAA AACTCTGTTTCTTTTGAAAAATCACTATATTCTGGTTTTGCTCTGCATGCATCTGCTGCA AATAGCTCCTTTTATGATGGCTTATCTAAAGGAATACCATCATATTCTTTTTGTACTGAT AATAAGCGGGGTTTAGGAGAAACACACATGGTCCCTGATTCATCAGTGTATAAAGCTTCA ATAAGGCTACCTTGGTTGGAACCAAACCGTCCTGCCATGCAGACCAGAGATGATCATTTT AGTAGCACGCGACAAGATTTCAGCATCAATGACTCTATGAAGAGCAATTCCTCTTTGCAA GGGGATATCATTCCGAACTCTGATACTGGAGGGTTGCCTTTCTCCAGATCAGCAGTGAAC TTGGAGACTGGATGGAAGCCTCGTGGAATTCTAGTGGCACATCTCCAGGAGCATCGCTCT TCTGTCAATGACATTGCCGTATCAAATGATAATACCTTTTTTGTGACTGCTTCTGATGAC TCAAGTATCAAAATATGGGATACAAGAAAATTGGAAAAGGACATTGCTTTCAGATCTAGG TTAACATACAGCATGGGTAATAGCCGAGCTCTATGTACGACAATGGTTCATGGTACTTCA CAGGTTATTGTCGGTGCCAGCGATGGAACATTACACTTGTTTTCTGTGGATTGTGCACGC AGCGTTGGGACTGTTGTGGAAAGGTATGCTGGAATTGTTGATGTAAAAAGGAACGAGATT AAAGAAGACGCAATTCTCAGCGTTGTAAATTGTTCAACCGACAGCTTTAGCCCGACTGTT CTTTTCAGCACTGAACATTGTGGCATCCATAAATGGGATACAAGAACCAACTCAGAATCT TGGTCTTTTAAATCCTCTCCGGAGGAGGGCTATATATCGGCACTTGTTGTGGGCCCGTGT GGGAATTGGTTCATCTCAGGTTCTTCGAGAGGCGTCCTTACACTGTGGGATAATAGGTTT TTAGTACCTGTTAAATCGTGGAATTATTCAACATTAAGCCCAATAGAGAAACTATGCTTG CTTATACCT

Peptide Sequence

PEP ID	Zm00001d018382_P045
PEP Infomation	pep chromosome:B73_RefGen_v4:5:219610343:219617264:-1 gene:Zm00001d018382 transcript:Zm00001d018382_T045 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:vacuolar protein sorting2 description:protein kinase family protein / WD-40 repeat family protein
Sequence	MGNKIARTTQASATEYYLHDLPSTYNLVLLDVVSRGRFLKSVRCKHDEGLLLVKVYFKRA GESIDLKEHERRLERIRNAFKGIEGSHVWPFQVWLQTDKAAYLLRQYFFSNLQDRLSTRP FLSQVAKKWLAFQLIHAVEQSHSKGICHGDIKCENVLVTSWNWLYLADFASFKPTYIPDD DPSDFSFYFDTGGRRRCYLAPERFYESGGESQVAADAPLQPSMDIFSLGCVLAELFLEGQ PLFELSQLLAYRRGQYDPIHTLEKIQDTGIRDMILHMIQLDPKKRVPCRSYLQKYESVVF PFYFSKFLHKFFSDIVPLDSDARVEKTQENFGKIQEIMMGSSTIEQIERSTSCEHSEPSG RKGMEGEILNSPGNYRNSTSVFKKNTPVDHQHIIGDINFLLKEVEGRSNNTSTKVTKDTY HFVAPSITCANGVQSSHLVNPAGRQIGTGLMGHKHVVSHVKISKSNIRSLVATYDDQSDT YSFDIFQQTDSKVSCEGMVLLASLLCSCIRSVKKPELRRASLILLKFSSTYIDDDSRLQL VVPYVIAMLSDPSAIVRCAALETLCDVLCLVQDFPISDAVIFPEYILPMLSLLPDDTEES VRVCYASNIHKLALTAYRFLLRSRSIADIRPLDESVVAHRSQSADSPAKRQDNFFRQLAE LRKSIYEIVQDLVMGQKQTPNTRRALLQDIGYLCYFFGHKQSNDFLLPILPAFLNDHDEQ LRAVFFGQIVYVCYFIGARSVEEYLLPYLEQALSDDMEAVLVNALDCLTMMCRSGYLRKR VIVGLLVKILPLLRYPINWVKQSAVRFVAACSESLGSVDTYVYLSPHLRQFLHMEPPSLA SETALLSCLKPPLPKSIFYEGLEHAQDIGDILLKSSGKKEQIVHGGRYPGTAQSGSLANL EDILRPKGPNISSSMSLYVKNSVSFEKSLYSGFALHASAANSSFYDGLSKGIPSYSFCTD NKRGLGETHMVPDSSVYKASIRLPWLEPNRPAMQTRDDHFSSTRQDFSINDSMKSNSSLQ GDIIPNSDTGGLPFSRSAVNLETGWKPRGILVAHLQEHRSSVNDIAVSNDNTFFVTASDD SSIKIWDTRKLEKDIAFRSRLTYSMGNSRALCTTMVHGTSQVIVGASDGTLHLFSVDCAR SVGTVVERYAGIVDVKRNEIKEDAILSVVNCSTDSFSPTVLFSTEHCGIHKWDTRTNSES WSFKSSPEEGYISALVVGPCGNWFISGSSRGVLTLWDNRFLVPVKSWNYSTLSPIEKLCL LIP

Transcript Sequence

Transcript ID	Zm00001d018382_T045
Transcript Infomation	cdna chromosome:B73_RefGen_v4:5:219610343:219617264:-1 gene:Zm00001d018382 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:vacuolar protein sorting2 description:protein kinase family protein / WD-40 repeat family protein
Sequence	GCCTACGCCCCACGCAACGCCACGAGCCCACGACGCACCCCGCAAGCGAAGCAAAGCAAG CCCCAGGCGGCGCCGCCGGCGGAGGACGCGATGGGGAATAAGATCGCGCGGACGACGCAG GCGTCGGCGACGGAGTACTACCTCCACGACCTGCCGTCCACCTACAATCTCGTGCTCCTC GACGTCGTCAGCCGCGGCCGCTTCCTCAAGTCCGTCCGCTGCAAGCACGACGAGGGGTTG CTCCTCGTCAAGGTCTACTTTAAGCGCGCCGGCGAGTCCATAGACCTCAAGGAGCACGAG CGGAGGCTGGAGCGGATTAGGAACGCGTTCAAGGGGATCGAGGGGTCCCACGTATGGCCC TTCCAGGTTTGGCTGCAAACAGATAAGGCAGCATATCTCTTGAGACAATACTTCTTCAGC AACTTGCAAGATCGGTTGAGTACACGCCCTTTCCTCAGTCAGGTTGCAAAGAAATGGCTT GCCTTTCAGTTAATTCATGCAGTGGAACAGAGCCATAGTAAGGGAATTTGCCATGGTGAC ATAAAATGTGAAAATGTGCTCGTTACTTCTTGGAATTGGCTATATCTTGCGGACTTTGCA TCATTCAAGCCAACGTATATCCCGGATGATGACCCGTCTGATTTCTCATTCTACTTTGAC ACTGGAGGAAGACGACGATGCTATCTAGCACCTGAAAGATTCTATGAAAGTGGTGGTGAA TCCCAAGTTGCAGCAGACGCACCTCTGCAACCATCTATGGATATATTTTCTCTTGGGTGT GTTCTTGCTGAACTTTTCCTTGAAGGCCAGCCACTTTTTGAGCTTTCTCAACTTCTGGCT TACCGGCGTGGTCAATATGACCCCATACATACCCTAGAAAAGATACAAGATACTGGTATC CGTGACATGATACTTCACATGATCCAGTTGGACCCCAAAAAAAGGGTACCATGTCGAAGC TATCTGCAGAAATATGAATCTGTTGTGTTCCCATTTTATTTTTCAAAATTTCTGCACAAG TTCTTCTCGGATATCGTTCCACTTGATTCCGATGCTAGGGTTGAGAAGACTCAAGAAAAT TTTGGAAAGATACAGGAAATAATGATGGGTAGTTCAACAATTGAACAAATTGAGAGGTCT ACATCGTGTGAGCATAGTGAACCATCTGGGAGAAAAGGCATGGAAGGGGAAATTTTAAAC TCGCCAGGAAATTATAGAAATAGCACATCTGTATTTAAGAAAAATACTCCTGTAGACCAT CAACATATTATTGGAGATATCAATTTCCTCCTCAAAGAAGTGGAGGGCAGGAGTAACAAC ACAAGCACAAAGGTCACAAAAGACACTTATCATTTTGTTGCACCGAGCATTACCTGTGCA AATGGTGTTCAGTCCTCTCATCTAGTTAATCCAGCAGGAAGACAAATTGGAACTGGTTTG ATGGGCCACAAACATGTTGTATCTCATGTGAAGATCTCAAAGAGTAACATACGCTCCTTG GTGGCTACTTATGATGATCAATCAGATACCTATAGTTTTGATATTTTTCAGCAGACAGAC TCCAAGGTGAGCTGTGAAGGCATGGTCTTGCTTGCCTCATTACTTTGCTCATGCATACGC AGTGTGAAAAAACCTGAGCTAAGAAGGGCCAGCCTCATTCTTCTGAAGTTCTCGTCCACA TACATAGATGATGATAGTCGCCTACAGCTAGTGGTTCCCTATGTGATTGCGATGCTTTCA GATCCGTCTGCCATTGTCCGCTGTGCTGCTTTGGAAACCCTATGTGATGTTCTTTGTCTT GTGCAAGATTTCCCTATCAGTGATGCTGTTATATTCCCTGAGTATATCCTCCCAATGCTC TCTTTGCTCCCTGATGATACGGAAGAGAGTGTTAGGGTTTGCTATGCTAGCAATATTCAT AAGCTGGCTTTAACAGCTTATAGGTTCCTACTTCGTTCTCGTAGCATTGCAGATATTCGA CCTCTGGATGAATCAGTGGTAGCTCACAGATCCCAATCTGCAGATTCACCAGCGAAGAGG CAAGATAATTTTTTTCGCCAGCTTGCAGAACTGAGGAAATCTATTTATGAGATAGTGCAA GATTTGGTGATGGGACAAAAGCAGACACCTAATACCCGTAGAGCTCTTCTGCAGGATATA GGTTATTTGTGTTACTTCTTTGGGCACAAACAAAGTAACGATTTTCTTCTTCCTATACTT CCAGCATTTCTAAATGATCATGATGAGCAGCTCCGTGCAGTTTTCTTTGGCCAGATTGTC TATGTTTGCTATTTTATTGGAGCAAGAAGTGTTGAGGAATATCTTCTGCCATATCTTGAA CAGGCACTAAGTGATGACATGGAGGCTGTCCTTGTAAATGCACTTGATTGCTTGACCATG ATGTGCAGAAGTGGTTATTTGAGGAAAAGAGTAATTGTTGGTCTATTGGTAAAGATTCTC CCCCTGCTCCGGTATCCAATCAATTGGGTTAAACAGTCTGCTGTAAGATTTGTTGCTGCC TGCAGCGAGAGCTTAGGATCTGTAGATACTTATGTGTATCTTTCTCCTCATCTAAGGCAG TTCCTACACATGGAGCCACCTTCATTGGCCTCTGAAACTGCTCTTCTTTCATGTCTTAAG CCTCCACTACCAAAATCAATCTTCTATGAAGGTTTAGAGCATGCTCAGGACATTGGAGAC ATTTTACTGAAGAGCAGTGGCAAGAAAGAACAGATAGTACATGGTGGAAGATATCCTGGT ACAGCACAAAGTGGATCCTTGGCCAACCTTGAAGATATCCTGCGACCGAAAGGCCCTAAT ATTTCCAGCAGCATGTCCTTGTATGTCAAAAACTCTGTTTCTTTTGAAAAATCACTATAT TCTGGTTTTGCTCTGCATGCATCTGCTGCAAATAGCTCCTTTTATGATGGCTTATCTAAA GGAATACCATCATATTCTTTTTGTACTGATAATAAGCGGGGTTTAGGAGAAACACACATG GTCCCTGATTCATCAGTGTATAAAGCTTCAATAAGGCTACCTTGGTTGGAACCAAACCGT CCTGCCATGCAGACCAGAGATGATCATTTTAGTAGCACGCGACAAGATTTCAGCATCAAT GACTCTATGAAGAGCAATTCCTCTTTGCAAGGGGATATCATTCCGAACTCTGATACTGGA GGGTTGCCTTTCTCCAGATCAGCAGTGAACTTGGAGACTGGATGGAAGCCTCGTGGAATT CTAGTGGCACATCTCCAGGAGCATCGCTCTTCTGTCAATGACATTGCCGTATCAAATGAT AATACCTTTTTTGTGACTGCTTCTGATGACTCAAGTATCAAAATATGGGATACAAGAAAA TTGGAAAAGGACATTGCTTTCAGATCTAGGTTAACATACAGCATGGGTAATAGCCGAGCT CTATGTACGACAATGGTTCATGGTACTTCACAGGTTATTGTCGGTGCCAGCGATGGAACA TTACACTTGTTTTCTGTGGATTGTGCACGCAGCGTTGGGACTGTTGTGGAAAGGTATGCT GGAATTGTTGATGTAAAAAGGAACGAGATTAAAGAAGACGCAATTCTCAGCGTTGTAAAT TGTTCAACCGACAGCTTTAGCCCGACTGTTCTTTTCAGCACTGAACATTGTGGCATCCAT AAATGGGATACAAGAACCAACTCAGAATCTTGGTCTTTTAAATCCTCTCCGGAGGAGGGC TATATATCGGCACTTGTTGTGGGCCCGTGTGGGAATTGGTTCATCTCAGGTTCTTCGAGA GGCGTCCTTACACTGTGGGATAATAGGTTTTTAGTACCTGTTAAATCGTGGAATTATTCA ACATTAAGCCCAATAGAGAAACTATGCTTGCTTATACCTC