Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d018355_T007
CDS Infomation

cds chromosome:B73_RefGen_v4:5:219132986:219137130:-1 gene:Zm00001d018355 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:autophagy18e description:homolog of yeast autophagy 18 (ATG18) B
Sequence

ATGTGCAGGCTTGTTGTTGTATTGCAGGATAGGACTTTTGTTTATGATCTAAATAGCACT
ACTATATTGGACGAAATTGAAACGGTACCCAATACAAAAGGTCTATGCGCATTTGCTCCT
AATTCTGAAGAGTGTTATTTGGCTCTCCCAGCAAGCACATCCAAAGGATCTGCTTTAGTA
TACAAAGCATCAAAACCGGAATTAATATGCCAGATAGATGCTCATCTGGCTCCGTTAGCT
GCAATGGTTTTTTCTTTGAACGGCATGTACCTGGCAACGGCTTCTGAAAAGGGTACCATG
ATTAGGGTGCATCTTGTTGCACAAGCAACCAAGTCACATAGCTTTCGGCGAGGAACATAC
CCATCGACAATCTATTCACTGGCATTTAGTCCCTCTGTTGATCTGCCTGACGTTCTTGTT
GCCACAAGTTCATCAGGATCTTTGCACATGTTTTTCCTTGATGCTTCCAGGAACGCAAGG
AGACAAGCAAATACATTGTTCAGCTCAGTGATTCCTGGATCTGTAACTGATGCTTTGGAT
CCAGCTAATCATCATGTTATTCACAATGTTGTCACTGCAGACATCAAGAGGTCCATTCAT
TATTGTTGTCTAGCAGTACACAGTGTTGAAAATTCCCAAAATTCTTCCAAATTTCCCTCG
CTGAAGACTGTTATTTACATTGTAACACACAATGGATACTTCCGAGAGTATCTGATCGGC
ACAACCAAGTCAAATGAATCTTCATGGTTGTTGGAGCGTGAATTTAATCTCCTGGATGCT
TATTCGGGTAGTCCCAAGCAGAACGAGCTGCACATAGACTGA

Peptide Sequence

PEP ID

Zm00001d018355_P007
PEP Infomation

pep chromosome:B73_RefGen_v4:5:219132986:219137130:-1 gene:Zm00001d018355 transcript:Zm00001d018355_T007 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:autophagy18e description:homolog of yeast autophagy 18 (ATG18) B
Sequence

MCRLVVVLQDRTFVYDLNSTTILDEIETVPNTKGLCAFAPNSEECYLALPASTSKGSALV
YKASKPELICQIDAHLAPLAAMVFSLNGMYLATASEKGTMIRVHLVAQATKSHSFRRGTY
PSTIYSLAFSPSVDLPDVLVATSSSGSLHMFFLDASRNARRQANTLFSSVIPGSVTDALD
PANHHVIHNVVTADIKRSIHYCCLAVHSVENSQNSSKFPSLKTVIYIVTHNGYFREYLIG
TTKSNESSWLLEREFNLLDAYSGSPKQNELHID

Transcript Sequence

Transcript ID

Zm00001d018355_T007
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:219132986:219137130:-1 gene:Zm00001d018355 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:autophagy18e description:homolog of yeast autophagy 18 (ATG18) B
Sequence

GAACACGATTCCATACAGGACCTCACCTCCCTACTCGCGTAGTCATCGTCGTCGTCGTCC
TCGTCCTCCCGACGTCTGGTGGTATCGGACTTGCGTGGCGTGGAGGTCCTTCCGAACTTG
GGATCGATTTGCTTGTCAGCGCCGAACCCTAGCTTTGCTTCGACGGCACCCACCTACGGT
ACGCCCGCGGCCCCAAGCAGTCAGGCGACACCGAATAATTTGGTTACAGAGACGAGCGGG
TGCGCCGGCGAGAGGGCCCGATTCTCACCGCGCCGGCGATGGCGAGCAGCTCGTCTCCGT
CACAGGTCATCTGCGCCTCCTTCAATCAGGACAACAGCATGTTTTCTGTCGGGACCAAGG
ATGGGTTCAAGATCTTTGACGCTCGTAATGGGAGGCTCTGCTACGAAAAGAGTCTTGGGG
GATTCAACATTGTGGAAATGCTATTTGGCACAAACCTACTTGCCATTGTCGGAACCGGTG
AACAGCCTGCAATGTCTCCTCGTCGTTTGTGCCTGTTCAATACCAAAACAGGAGCATCAA
AGAGAGATCTGAACTTTAAGACTTCAATTTTGGCTGTTCGGTTAAGTAGGAAGAGGTTAG
CTACTACTTCAATATATTTAGGGAACATATCAGGTGCATATGAGCCTTTGGTGCACATAT
TATCCACGACTATCAATCTTAGATCTAACGTTTTTCCACACCTCCTTTGTTGTCCTATAT
ATTTTGCAAAGAACATCCTCCATCACTTCCCCTCTACTCCGTGCACGAAGGGGTATGTGT
GGGAGGACGTTGGATCTAAAATGGATGGTCACGATTTAATATGTGCATCAGGTGCATCAA
AATCACATGTGCACTTGATATGTCAGTTTCTGTTGTGGCTTATACTTATGTTTTGTTAAT
TGATGCATGCAATCTAGTCCCAGTCAGGATCCACAAATATTGTGCTGTAGTGCTCACTTT
AGTTGATGTGTTGATGTGTTCTTTTGAATAGAGTAGTAACCACATTATGTGCAGGCTTGT
TGTTGTATTGCAGGATAGGACTTTTGTTTATGATCTAAATAGCACTACTATATTGGACGA
AATTGAAACGGTACCCAATACAAAAGGTCTATGCGCATTTGCTCCTAATTCTGAAGAGTG
TTATTTGGCTCTCCCAGCAAGCACATCCAAAGGATCTGCTTTAGTATACAAAGCATCAAA
ACCGGAATTAATATGCCAGATAGATGCTCATCTGGCTCCGTTAGCTGCAATGGTTTTTTC
TTTGAACGGCATGTACCTGGCAACGGCTTCTGAAAAGGGTACCATGATTAGGGTGCATCT
TGTTGCACAAGCAACCAAGTCACATAGCTTTCGGCGAGGAACATACCCATCGACAATCTA
TTCACTGGCATTTAGTCCCTCTGTTGATCTGCCTGACGTTCTTGTTGCCACAAGTTCATC
AGGATCTTTGCACATGTTTTTCCTTGATGCTTCCAGGAACGCAAGGAGACAAGCAAATAC
ATTGTTCAGCTCAGTGATTCCTGGATCTGTAACTGATGCTTTGGATCCAGCTAATCATCA
TGTTATTCACAATGTTGTCACTGCAGACATCAAGAGGTCCATTCATTATTGTTGTCTAGC
AGTACACAGTGTTGAAAATTCCCAAAATTCTTCCAAATTTCCCTCGCTGAAGACTGTTAT
TTACATTGTAACACACAATGGATACTTCCGAGAGTATCTGATCGGCACAACCAAGTCAAA
TGAATCTTCATGGTTGTTGGAGCGTGAATTTAATCTCCTGGATGCTTATTCGGGTAGTCC
CAAGCAGAACGAGCTGCACATAGACTGACTTGTAATGCTCGCTCCTCTGACCGGAACCTG
AGCATCTCCAACAGAAGTTCTATATTTGAGTCCTTAAAATTAAAATATGACCTGATTTAA
AGTGTTTAGGGCTATAAAACTGTTTGTAACTCCAACAATTGAGTTCTATATCATATTATT
AGGAAATAAATCATGTTATTTAGGAAATAAAAGATTAAAAATAGTGTAGAAAATGAAGAT
ATGGCTCTAGTAGATGGGGTACTATATTTAAGACCCGGGAGACTGAGCCCTATAACTGTT
TGATGAGTTTTTATAAAATAGGACCCCTGTTGGAGTATGTTGGAGTATGTTTCTGGTGTT
AGGGTCCTATATTTCAAAATAGGATCCTATTTAGGACTCTTGTTGGAGA