Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d018243_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:5:217270039:217273763:-1 gene:Zm00001d018243 gene_biotype:protein_coding transcript_biotype:protein_coding description:Replication factor C subunit 5
Sequence

ATGGCGGGAACCGCCGCCGCCGCTCTCATGGACATCGACGCAGCCGCGCCGCCTCCCCCG
CCGCCTGGTGCGGCGGCCAAGGGCAAGGCGCCGCTCTCCGCTGGCGGCAGGGCAGCGCCC
TGGGTCGAGAAGTACCGGCCCCAGTCCCTCGCTGACGTCGCCGCCCACCGCGATATCGTC
GACACAATTGACAGGCTTACAAACGAGAATAGACTTCCACACTTGTTGCTATATGGGCCA
CCTGGCACTGGGAAAACATCGACGATTCTGGCTGTTGCGAGGAAGCTATATGGGTCTCAG
TATAGCAACATGATCCTGGAGCTCAATGCGTCAGATGAACGTGGCATTGATGTTGTCAGG
CAGCAGATCCAGGATTTTGCTGGGGCACGCAGCCTCTCTTTTGGAGCAAGGCCTTCTGTT
AAGCTGGTTCTCTTGGATGAAGCAGACGCAATGACAAAGGATGCACAATTTGCATTGAGA
AGAGTTATCGAGAAGTATACAAGGAGCACAAGGTTTGCACTCATATGCAACCATGTCAAC
AAAATCATCCCTGCGCTACAATCAAGGTGCACCAGGTTTAGATTTGCTCCACTAGATGGC
AGTCATGTTAGAGAGCGTCTTCAACATATAATAAAATCTGAGGGGCTCAGTGTAGATGAC
GGTGGCTTGACAGCCCTAGTGCGGTTAAGCAATGGTGATATGAGGAAGGCTTTGAATATA
TTGCAGTCAACGCACATGGCATCCCAACAAATCACAGAAGAAGCTGTCTATCTTTGCACA
GGAAACCCCATGCCAAAAGATATCGAGCAGATAGCTTTTTGGCTATTAAATGAACCATTT
TCAACCAGCTTCAAATATATATCTGACATGAAGATGAGAAAAGGGCTGGCCTTGGTTGAT
ATCATACGGGAGGTTACTATGTTTGTGTTCAAAATACAAATGCCATCTGATGTTCGTGTA
AAGCTAATCAATGACTTGGCTGATATTGAGTACAGACTAAGCTTTGCATGCAACGATAAA
CTGCAGCTGGGCGCACTGATCTCAACTTTCACGGACACTCGCACGGCTATGGTTGCTGCT
GCCAGCTAA

Peptide Sequence

PEP ID

Zm00001d018243_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:5:217270039:217273763:-1 gene:Zm00001d018243 transcript:Zm00001d018243_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Replication factor C subunit 5
Sequence

MAGTAAAALMDIDAAAPPPPPPGAAAKGKAPLSAGGRAAPWVEKYRPQSLADVAAHRDIV
DTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLYGSQYSNMILELNASDERGIDVVR
QQIQDFAGARSLSFGARPSVKLVLLDEADAMTKDAQFALRRVIEKYTRSTRFALICNHVN
KIIPALQSRCTRFRFAPLDGSHVRERLQHIIKSEGLSVDDGGLTALVRLSNGDMRKALNI
LQSTHMASQQITEEAVYLCTGNPMPKDIEQIAFWLLNEPFSTSFKYISDMKMRKGLALVD
IIREVTMFVFKIQMPSDVRVKLINDLADIEYRLSFACNDKLQLGALISTFTDTRTAMVAA
AS

Transcript Sequence

Transcript ID

Zm00001d018243_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:217270039:217273763:-1 gene:Zm00001d018243 gene_biotype:protein_coding transcript_biotype:protein_coding description:Replication factor C subunit 5
Sequence

TTCGAATTGGCGCCAAGCCGCCAACCATTCCCCCCAATCCCGCCTGCCAGCCCTAGGGTT
CCTGCTACGCCATGGCGGGAACCGCCGCCGCCGCTCTCATGGACATCGACGCAGCCGCGC
CGCCTCCCCCGCCGCCTGGTGCGGCGGCCAAGGGCAAGGCGCCGCTCTCCGCTGGCGGCA
GGGCAGCGCCCTGGGTCGAGAAGTACCGGCCCCAGTCCCTCGCTGACGTCGCCGCCCACC
GCGATATCGTCGACACAATTGACAGGCTTACAAACGAGAATAGACTTCCACACTTGTTGC
TATATGGGCCACCTGGCACTGGGAAAACATCGACGATTCTGGCTGTTGCGAGGAAGCTAT
ATGGGTCTCAGTATAGCAACATGATCCTGGAGCTCAATGCGTCAGATGAACGTGGCATTG
ATGTTGTCAGGCAGCAGATCCAGGATTTTGCTGGGGCACGCAGCCTCTCTTTTGGAGCAA
GGCCTTCTGTTAAGCTGGTTCTCTTGGATGAAGCAGACGCAATGACAAAGGATGCACAAT
TTGCATTGAGAAGAGTTATCGAGAAGTATACAAGGAGCACAAGGTTTGCACTCATATGCA
ACCATGTCAACAAAATCATCCCTGCGCTACAATCAAGGTGCACCAGGTTTAGATTTGCTC
CACTAGATGGCAGTCATGTTAGAGAGCGTCTTCAACATATAATAAAATCTGAGGGGCTCA
GTGTAGATGACGGTGGCTTGACAGCCCTAGTGCGGTTAAGCAATGGTGATATGAGGAAGG
CTTTGAATATATTGCAGTCAACGCACATGGCATCCCAACAAATCACAGAAGAAGCTGTCT
ATCTTTGCACAGGAAACCCCATGCCAAAAGATATCGAGCAGATAGCTTTTTGGCTATTAA
ATGAACCATTTTCAACCAGCTTCAAATATATATCTGACATGAAGATGAGAAAAGGGCTGG
CCTTGGTTGATATCATACGGGAGGTTACTATGTTTGTGTTCAAAATACAAATGCCATCTG
ATGTTCGTGTAAAGCTAATCAATGACTTGGCTGATATTGAGTACAGACTAAGCTTTGCAT
GCAACGATAAACTGCAGCTGGGCGCACTGATCTCAACTTTCACGGACACTCGCACGGCTA
TGGTTGCTGCTGCCAGCTAATTCCAGTAATGTGAAGGATCTTTCTGCTGCTCCCTCTGGA
ATCTGAAGATGAAGCGCAGCTACATTATGGGGTCAACGTCTTGCCTGTAGTTAGCAAGCT
GAAAGGTTTGGTGAGGGTTGTCTTAGATCTGTATGTCTGCTGGACGTGATGTGGTAACTG
CCTGGAACTTGGGAGTACTCGTATGACTGAACGCTGCCAGGCGTTCTCATGTTATGCGTG
TAAGATTCTATCCAGTAGTATAAACCCTAGTGCCGTTCTTTGACGAAGTTACATATTTTT
GCAAATGCCACGGAGATTTATGGTGTTAG