Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d018226_T009
CDS Infomation

cds chromosome:B73_RefGen_v4:5:217010322:217018869:1 gene:Zm00001d018226 gene_biotype:protein_coding transcript_biotype:protein_coding description:UPF0614 C14orf102-like protein
Sequence

ATGGATTCCAAATCTTCATCCTTAGTTCAACTAGAAGTGGGGTTGGTGGATATATTTGTT
AATCTGTGCCGATTTGAGTGGCAGACAGGACATCGGGAACTAGCAACTGGGCTATTTCAG
GCGCAGATGGAGTTTAGCTTATTTGCCCCTCCTTTGTATCTGACAACAAGCAGTAAGCAA
AGGCTCTTTGAACACTTCTGGAACAGTGGTGGTGCCAGAATTGGGGAAGATGGAGCTCTT
GGATGGTCTGAATGGTTAGCAAAAGACGAGGAGAGTAGACAAAAGTTGTCTATGCAAGAA
AATTCACAAGAGACTGAAACAGGAGGCTGGAGTGGTTGGTTTGATCCTTCTCTGGGTAAT
ACTGAGACAAATGATTTATCAAACAAATCACTGGAACCATCATTGACCGATGGAAATGAT
GCTGAAGACCTTGATGCTGAGGACTCACCAGCACAAGATGATGTTGAATCCTTGCTGAAA
AAGCTTGGTATCGATGTAGATGCAGAGTCCAATAGTGAAGTTAAAGACGCAGAAACCTGG
AATAGATGGGCCTCAATGGAGCTGTCACGGGACAATCAGCAATGGATGCCTCTTCATGAA
AATTATGGATCAATTCATTGTGGTGATGCTCCATCTGGGGAAGACAATGACCAGCTTTCC
AGAGTAATTTTGTTTGAGGATGTAACTGAGTTCTTGTTTTCTCTATCTTCAGAGGAGGCC
CGCTTTTCTCTGATGTGCCAATTTATTGATTTTTATGGTGGCAAAATCTCAAGATGGACA
TCAACAAACAGTCCAAGTTGGCTCGATCGAATATTGAGCTTAGAGAATATTACAGATGAC
ATCCTGGAAGATCTAGGTGCTGTATCTGACGTTGTAAACAAGAACCAAAGTTCATATAGT
TGTAAATATAAATTGGAATCATTACTGGGAAGCATGTGTGACCTTTCACAAAGGCCGGGC
CTGATGAAATTTCTCAAAAATGCGATACTGCTTCTGCTTGGTGTTTTCCCTCGTAATCAT
ATCCTGGAGGAAGCTGTTCTTGTTACTACCCAAATGTTTACTCCTCAAGAGAACTCTTCC
TCCATTCAAACTAATGCATCACGGGCTTTGGCCAAAAGTATGTTGAAGAAAGACCGACAG
GATTTTTTGCTTTGTGGGATATATGGACGAACTGAGGCAATGAATGGGAACATTGAACAA
GCAAGGAAGATATTTGACATGGCACTGTTATCAACTGAAGCAACTTCTGAGGATCTTAGG
AAGAAGGTTCCCATCCTTTATCTTTGGTACGCCGAGATGGAGATTACAGTGTCCGCTTCA
AGAAACAACTCTGACTCAATGCATCGTGCAGTTTACATCCTATCCTGCTTAGGGAGCAAT
CTAAAATATTCTCCTTTTGTTGGCCCTATTTCAAGGCTTCAGGTCTTGAGGGCTCGCCAA
GGGTTTAAAGAGCAGATTAGAAGCTCACGATCTGCATTTTCCTGTGGTGCTATAAACAAA
GAATCAGTTGCTCTGATCTGCTCAGCTTCTTTGTTCGAAAGCATGACAACAGGCTGTTAC
TCGGGTCTTGAAGTGATAGAGGAGACTTTTCCAATGACATTTTCAGAGAGCAATAATTTG
GAGTGTGAGGATTTGTGGGTGTACTACATCAAAATGCTTCAAAAAAATCTTAACCAATTG
AATCTATCAAGGGTCTGGCCAAGCATATCACGCGGAGTGCACAAATATCCCTACAATCCA
AAATCATATTCAGCGACGTTAACCCTGAGTTATCTTTACAGTGTATCCAACAATCTCCGT
CTCACACTCGACAAATGTAGTCAAAGGGACCCTTCTGTAATCACCTTGCTCTTTGCTTTG
TCCTTTGAATGGGGTAAAGCTGGATCTGACAATAGAATACACAGCCTGTTTGAGAGAGCT
CTAGCTGATGATAAGTTGCAGAAGTCTGTCCTATTGTGGCGCTGTTATCTAGCCTATGAG
GCAGAAATAGTCTGCAACTCTTCTGCAGCACGGCGTGTGTTCTTCAGAGCTATACATGCC
TGTCCATGGTCTAAAAGATTATGGCTTGATGGTTTCCAAAAGTTGGGCTCTGTTCTGACA
TTGAAGGAGTTGTCAGATCTCCAGGAAGTGATGCGTGACAAGGAATTAAACATCCGCACT
GACATCTATGAGATACTCCTAGAAGAAGAAACAAATACATGA

Peptide Sequence

PEP ID

Zm00001d018226_P009
PEP Infomation

pep chromosome:B73_RefGen_v4:5:217010322:217018869:1 gene:Zm00001d018226 transcript:Zm00001d018226_T009 gene_biotype:protein_coding transcript_biotype:protein_coding description:UPF0614 C14orf102-like protein
Sequence

MDSKSSSLVQLEVGLVDIFVNLCRFEWQTGHRELATGLFQAQMEFSLFAPPLYLTTSSKQ
RLFEHFWNSGGARIGEDGALGWSEWLAKDEESRQKLSMQENSQETETGGWSGWFDPSLGN
TETNDLSNKSLEPSLTDGNDAEDLDAEDSPAQDDVESLLKKLGIDVDAESNSEVKDAETW
NRWASMELSRDNQQWMPLHENYGSIHCGDAPSGEDNDQLSRVILFEDVTEFLFSLSSEEA
RFSLMCQFIDFYGGKISRWTSTNSPSWLDRILSLENITDDILEDLGAVSDVVNKNQSSYS
CKYKLESLLGSMCDLSQRPGLMKFLKNAILLLLGVFPRNHILEEAVLVTTQMFTPQENSS
SIQTNASRALAKSMLKKDRQDFLLCGIYGRTEAMNGNIEQARKIFDMALLSTEATSEDLR
KKVPILYLWYAEMEITVSASRNNSDSMHRAVYILSCLGSNLKYSPFVGPISRLQVLRARQ
GFKEQIRSSRSAFSCGAINKESVALICSASLFESMTTGCYSGLEVIEETFPMTFSESNNL
ECEDLWVYYIKMLQKNLNQLNLSRVWPSISRGVHKYPYNPKSYSATLTLSYLYSVSNNLR
LTLDKCSQRDPSVITLLFALSFEWGKAGSDNRIHSLFERALADDKLQKSVLLWRCYLAYE
AEIVCNSSAARRVFFRAIHACPWSKRLWLDGFQKLGSVLTLKELSDLQEVMRDKELNIRT
DIYEILLEEETNT

Transcript Sequence

Transcript ID

Zm00001d018226_T009
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:217010322:217018869:1 gene:Zm00001d018226 gene_biotype:protein_coding transcript_biotype:protein_coding description:UPF0614 C14orf102-like protein
Sequence

AGGGGAATTCTCCAGATTCAAAGTTTCTGAAATTCGGAAGTCCTACGTGTATGCTGTACA
GGCTCTATCTGCAGCTTGCACCAAGTTATGTAGGCAGGATAATAAAAGCATGGATTCCAA
ATCTTCATCCTTAGTTCAACTAGAAGTGGGGTTGGTGGATATATTTGTTAATCTGTGCCG
ATTTGAGTGGCAGACAGGACATCGGGAACTAGCAACTGGGCTATTTCAGGCGCAGATGGA
GTTTAGCTTATTTGCCCCTCCTTTGTATCTGACAACAAGCAGTAAGCAAAGGCTCTTTGA
ACACTTCTGGAACAGTGGTGGTGCCAGAATTGGGGAAGATGGAGCTCTTGGATGGTCTGA
ATGGTTAGCAAAAGACGAGGAGAGTAGACAAAAGTTGTCTATGCAAGAAAATTCACAAGA
GACTGAAACAGGAGGCTGGAGTGGTTGGTTTGATCCTTCTCTGGGTAATACTGAGACAAA
TGATTTATCAAACAAATCACTGGAACCATCATTGACCGATGGAAATGATGCTGAAGACCT
TGATGCTGAGGACTCACCAGCACAAGATGATGTTGAATCCTTGCTGAAAAAGCTTGGTAT
CGATGTAGATGCAGAGTCCAATAGTGAAGTTAAAGACGCAGAAACCTGGAATAGATGGGC
CTCAATGGAGCTGTCACGGGACAATCAGCAATGGATGCCTCTTCATGAAAATTATGGATC
AATTCATTGTGGTGATGCTCCATCTGGGGAAGACAATGACCAGCTTTCCAGAGTAATTTT
GTTTGAGGATGTAACTGAGTTCTTGTTTTCTCTATCTTCAGAGGAGGCCCGCTTTTCTCT
GATGTGCCAATTTATTGATTTTTATGGTGGCAAAATCTCAAGATGGACATCAACAAACAG
TCCAAGTTGGCTCGATCGAATATTGAGCTTAGAGAATATTACAGATGACATCCTGGAAGA
TCTAGGTGCTGTATCTGACGTTGTAAACAAGAACCAAAGTTCATATAGTTGTAAATATAA
ATTGGAATCATTACTGGGAAGCATGTGTGACCTTTCACAAAGGCCGGGCCTGATGAAATT
TCTCAAAAATGCGATACTGCTTCTGCTTGGTGTTTTCCCTCGTAATCATATCCTGGAGGA
AGCTGTTCTTGTTACTACCCAAATGTTTACTCCTCAAGAGAACTCTTCCTCCATTCAAAC
TAATGCATCACGGGCTTTGGCCAAAAGTATGTTGAAGAAAGACCGACAGGATTTTTTGCT
TTGTGGGATATATGGACGAACTGAGGCAATGAATGGGAACATTGAACAAGCAAGGAAGAT
ATTTGACATGGCACTGTTATCAACTGAAGCAACTTCTGAGGATCTTAGGAAGAAGGTTCC
CATCCTTTATCTTTGGTACGCCGAGATGGAGATTACAGTGTCCGCTTCAAGAAACAACTC
TGACTCAATGCATCGTGCAGTTTACATCCTATCCTGCTTAGGGAGCAATCTAAAATATTC
TCCTTTTGTTGGCCCTATTTCAAGGCTTCAGGTCTTGAGGGCTCGCCAAGGGTTTAAAGA
GCAGATTAGAAGCTCACGATCTGCATTTTCCTGTGGTGCTATAAACAAAGAATCAGTTGC
TCTGATCTGCTCAGCTTCTTTGTTCGAAAGCATGACAACAGGCTGTTACTCGGGTCTTGA
AGTGATAGAGGAGACTTTTCCAATGACATTTTCAGAGAGCAATAATTTGGAGTGTGAGGA
TTTGTGGGTGTACTACATCAAAATGCTTCAAAAAAATCTTAACCAATTGAATCTATCAAG
GGTCTGGCCAAGCATATCACGCGGAGTGCACAAATATCCCTACAATCCAAAATCATATTC
AGCGACGTTAACCCTGAGTTATCTTTACAGTGTATCCAACAATCTCCGTCTCACACTCGA
CAAATGTAGTCAAAGGGACCCTTCTGTAATCACCTTGCTCTTTGCTTTGTCCTTTGAATG
GGGTAAAGCTGGATCTGACAATAGAATACACAGCCTGTTTGAGAGAGCTCTAGCTGATGA
TAAGTTGCAGAAGTCTGTCCTATTGTGGCGCTGTTATCTAGCCTATGAGGCAGAAATAGT
CTGCAACTCTTCTGCAGCACGGCGTGTGTTCTTCAGAGCTATACATGCCTGTCCATGGTC
TAAAAGATTATGGCTTGATGGTTTCCAAAAGTTGGGCTCTGTTCTGACATTGAAGGAGTT
GTCAGATCTCCAGGAAGTGATGCGTGACAAGGAATTAAACATCCGCACTGACATCTATGA
GATACTCCTAGAAGAAGAAACAAATACATGATTCTGGTTTGTGTGAAGATCCCGAAACTG
CCCCGCATGACATGCTCTGCAGTTATAAGTTTCCAAAGGTTCATGAAATATTGGTTCTGC
ATTGCTGTTTTGTGGCCTATAAGCATCGAACTCTGAAGTCTCAATCAAGAACCTGCTATC
TATCATCAAATAAGATGGATGGGAAGTACAATGGGCATGCCTTGGATTGACAATCTTGCC
AAATATGACCATGTTTTACTATTTTTGTTCTTTCAAGATGGACCTTGTTGGCTGCCGTTC
TGAATATCTCACATGATTCATTATCGGTATATAGATAGAAGTGGCTTCAGTGGGCCCTTC
AACTGCACGATAAGATCAATGTTAGGAAGGCCTATTACAAATTCCTGTACGGAAATCATG
CCACGAACAAAACCGAAACATCAAAAGCAGCATATATTTTTGTTTGACTATCAGTAAAGC
AACTGCAGCCAGGTTAGGGGATCCTGCAGTGTGCTTGAGTGTCCAAACAAAAAGGCTTCG
AATGTATAGCTTCACCTGGCGTTTTGTTGAAGGTCCCCAAAGTTATGGACTTTAAGATGC
TGGTATATACTGGCTGGGAGCACAGATAAGAGAAGTAGCAGCACTGACATGACGGCCTCA
GATTCGAGCCATCTGTTGTTCATGTGTGCAGTGTGCTTGTGCATACTGTATTGAGTGTTC
ATTTCTGGAGGAATCAAGCCATCTGTTTATGTGTGCTAGCTGGATAAAGCGCTGCTTGAT
GTACCTACAGGGATATGGCCACATGGCTATGTACGCCATAGGTCAACCTGCATTACAGGG
TTGTTAATGTATCTCATCCTGGGTTGCGCCTTGATAATGTGACAGGCACGAAATGGTAGT
GTAATTTGATTTAAGTAGTTGAGTTTTGTAGAAACACAGTTCCTGGCACGATGGTTTGTT
GAGTGCATGACAGCATGAGACACCAAGCTCAGGGATGCAGGCATCCTCATGAAATTATGA
AACCACGCTGCTGTGGTAGCTGGTATGTTGGACAAAGTTCCGAGGCTGCAGCTTATGTAC
GTCCAATTTAAATCCAGTGGAGTTTTAGCGT