Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d018207_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:5:216597825:216606598:-1 gene:Zm00001d018207 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ubiquitin ligase protein COP1

Sequence

ATGGGCGACTCCTCGGTGGCCGGCGCGCTCGTGCCGTCCGTGCCCAAGCCGGAGCCCGCG
CCGTCCGGTGACACCTCCGCGGCGGCCGCGGCGACTACAGCGGCGCTGGCGATGCCGGAG
GAGGCGGGTATGCGCGCGGCGTCGGCGTCGCCTCAGGGGCCTGCGGAGGAGGGGGAGGGC
CCCGCCGATAGGGACCTCCTCTGCCCGATCTGCATGGCCGTCATCAAGGACGCCTTCCTC
ACCGCATGCGGCCACAGCTTCTGCTACATGTGCATCGTCACGCACCTCAGCAACAAGAGC
GACTGCCCCTGCTGCGGGCATTACCTTACCAAGGCCCAGCTCTACCCCAACTTTCTCCTT
GACAAGGTTCTGAAGAAAATATCAGCCCAACAAATAGCAAAAACAGCATCGCCGATCGAT
CAATTTCGATGTGCATTGCAACAGGGAAATGAAATGGGGGTTAAAGAGTTGGATAGCCTT
ATGACTTTGATTGCTGAGAAGAAGCGGCAAATGGAACAACAAGAATCAGAGACAAATATG
CAAATATTGCTAGTCTTCTTACACTGCCTTAGAAAGCAAAAGCTAGAAGAGTTGAATGAG
ATTCAAACTGATCTACAATACATCAAAGAGGATATAAGTTCTGTGGAGAGACATAGGGCA
GAATTATATCGCACAAAAGAAAGGTACTCCATGAAGCTGCGCATGCTTTTAGATGAGCCT
ACTGCGCAAAAAATGTGGCCCTCTCCTATAGACAAAGCTAGCTGTCGCTTTCTTCCCAAC
TCTCGGACACCACTTAGTGGATCATGTCCAGGAACTTTACAGAATAAGAAGCTTGATTTG
AAAGCTCAAGTAAGCCATCAAGGATTTCAAAGGAGAGATGCTCTAACTTCTTCTGATCCT
CCTAACTCCCCTATACAATCGGGTAATGTTATTGCTAGGAAGAGGCGAGTTCAAGCACAG
TTCAATGAGCTTCAAGAATACTACCTGCAAAGACGTCGTACTGGAGCACAGGCACGCAGA
CAAGAAGAAAGAGATATAGTTGCAATGAATAGAGAAGGCTATCATGCAGGTCTTCAGGAT
TTCCAGTCTGTGCTAACAACGTTCACTCGATACAGTCGTCTACGTGTCATTGCGGAACTA
AGACATGGAGACTTGTTTCACTCTGCCAATATTGTATCCAGTATTGAATTTGATCGTGAT
GATGAACTATTTGCTACCGCTGGAGTCTCGAAACGTATTAAAGTCTTCGAATTTTCCACT
GTTGTTAATGAACCATCAGATGTGCATTGCCCAGTTGTTGAAATGGCTACCAGATCTAAA
CTTAGCTGCCTAAGCTGGAACAAGTACTCAAAAAATATTATTGCAAGCAGTGACTATGAG
GGTATAGTAACTGTGTGGGATGTTCAGACCCGTCAGAGTGTGATGGAATATGAAGAGCAT
GAGAAGAGAGCATGGAGTGTTGATTTTTCTCGCACAGACTCTTCAATGCTAGTATCTGGG
AGTGATGATTGCAAGGTGAAAGTGTGGTGCACAAATCAAGAAGCAAGTGTGATCAATATT
GATATGAAAGCAAATATTTGCTCGGTTAAATATAATCCTGGATCAAGCTTCTACGTTGCA
GTCGGATCTGCTGATCACCATATTCATTACTTTGATTTACGTAATCCAAGTTCGCCTGTC
CATATTTTTGGGGGGCACAAGAAAGCAGTATCATATGTGAAATTCTTATCTAACAATGAG
CTTGCGTCTGCATCAACAGATAGCACATTACGCTTATGGGATGTCAAGGATAACTGCCCG
GTACGGACATTCAGAGGACACAAAAATGAAAAGAACTTTGTTGGCTTGTCTGTGAACAAT
GAATATATTGCTTGTGGAAGTGAGACAAATGAGGTTTTTGTTTATCACAAGGCTATCTCG
AAACCGGCAGCAAGCCATAGATTTGTATCTTCTGACCTGGATGATGCCGATGATGATCCT
GGTTCTTATTTCATTAGTGCTGTCTGCTGGAAGAGTGATAGCCCTACGATGTTAACTGCT
AACAGTCAGGGGACCATAAAAGTTCTTGTACTTGCTCCTTGA

Peptide Sequence

PEP ID

Zm00001d018207_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:5:216597825:216606598:-1 gene:Zm00001d018207 transcript:Zm00001d018207_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ubiquitin ligase protein COP1

Sequence

MGDSSVAGALVPSVPKPEPAPSGDTSAAAAATTAALAMPEEAGMRAASASPQGPAEEGEG
PADRDLLCPICMAVIKDAFLTACGHSFCYMCIVTHLSNKSDCPCCGHYLTKAQLYPNFLL
DKVLKKISAQQIAKTASPIDQFRCALQQGNEMGVKELDSLMTLIAEKKRQMEQQESETNM
QILLVFLHCLRKQKLEELNEIQTDLQYIKEDISSVERHRAELYRTKERYSMKLRMLLDEP
TAQKMWPSPIDKASCRFLPNSRTPLSGSCPGTLQNKKLDLKAQVSHQGFQRRDALTSSDP
PNSPIQSGNVIARKRRVQAQFNELQEYYLQRRRTGAQARRQEERDIVAMNREGYHAGLQD
FQSVLTTFTRYSRLRVIAELRHGDLFHSANIVSSIEFDRDDELFATAGVSKRIKVFEFST
VVNEPSDVHCPVVEMATRSKLSCLSWNKYSKNIIASSDYEGIVTVWDVQTRQSVMEYEEH
EKRAWSVDFSRTDSSMLVSGSDDCKVKVWCTNQEASVINIDMKANICSVKYNPGSSFYVA
VGSADHHIHYFDLRNPSSPVHIFGGHKKAVSYVKFLSNNELASASTDSTLRLWDVKDNCP
VRTFRGHKNEKNFVGLSVNNEYIACGSETNEVFVYHKAISKPAASHRFVSSDLDDADDDP
GSYFISAVCWKSDSPTMLTANSQGTIKVLVLAP

Transcript Sequence

Transcript ID

Zm00001d018207_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:216597825:216606598:-1 gene:Zm00001d018207 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ubiquitin ligase protein COP1

Sequence

ATCGTCGGTTGGTGCGCGCGGCGCGTCTGGCGTGCAGCGGCGGCACGACACGCAACTAGC
GCGAGGAGGGCGCGGCAGCAGCCGCTCCAGTCGACTTCTCCGACGTGGTCTCCTCCCACC
CATACACCCATCCCTTCCCCTCCCACACAGGCACACACACACCCACAGCACCCAATTCCC
TCGCGCTCCCCCTCTCCCGCATCACACATCCCACCGCCGCCGCCACCACCACCACCCGCC
CTATACCCGTATATAATTACTCGTACCCGGACGCCACCGCCGCCTGCGCCATGGGCGACT
CCTCGGTGGCCGGCGCGCTCGTGCCGTCCGTGCCCAAGCCGGAGCCCGCGCCGTCCGGTG
ACACCTCCGCGGCGGCCGCGGCGACTACAGCGGCGCTGGCGATGCCGGAGGAGGCGGGTA
TGCGCGCGGCGTCGGCGTCGCCTCAGGGGCCTGCGGAGGAGGGGGAGGGCCCCGCCGATA
GGGACCTCCTCTGCCCGATCTGCATGGCCGTCATCAAGGACGCCTTCCTCACCGCATGCG
GCCACAGCTTCTGCTACATGTGCATCGTCACGCACCTCAGCAACAAGAGCGACTGCCCCT
GCTGCGGGCATTACCTTACCAAGGCCCAGCTCTACCCCAACTTTCTCCTTGACAAGGTTC
TGAAGAAAATATCAGCCCAACAAATAGCAAAAACAGCATCGCCGATCGATCAATTTCGAT
GTGCATTGCAACAGGGAAATGAAATGGGGGTTAAAGAGTTGGATAGCCTTATGACTTTGA
TTGCTGAGAAGAAGCGGCAAATGGAACAACAAGAATCAGAGACAAATATGCAAATATTGC
TAGTCTTCTTACACTGCCTTAGAAAGCAAAAGCTAGAAGAGTTGAATGAGATTCAAACTG
ATCTACAATACATCAAAGAGGATATAAGTTCTGTGGAGAGACATAGGGCAGAATTATATC
GCACAAAAGAAAGGTACTCCATGAAGCTGCGCATGCTTTTAGATGAGCCTACTGCGCAAA
AAATGTGGCCCTCTCCTATAGACAAAGCTAGCTGTCGCTTTCTTCCCAACTCTCGGACAC
CACTTAGTGGATCATGTCCAGGAACTTTACAGAATAAGAAGCTTGATTTGAAAGCTCAAG
TAAGCCATCAAGGATTTCAAAGGAGAGATGCTCTAACTTCTTCTGATCCTCCTAACTCCC
CTATACAATCGGGTAATGTTATTGCTAGGAAGAGGCGAGTTCAAGCACAGTTCAATGAGC
TTCAAGAATACTACCTGCAAAGACGTCGTACTGGAGCACAGGCACGCAGACAAGAAGAAA
GAGATATAGTTGCAATGAATAGAGAAGGCTATCATGCAGGTCTTCAGGATTTCCAGTCTG
TGCTAACAACGTTCACTCGATACAGTCGTCTACGTGTCATTGCGGAACTAAGACATGGAG
ACTTGTTTCACTCTGCCAATATTGTATCCAGTATTGAATTTGATCGTGATGATGAACTAT
TTGCTACCGCTGGAGTCTCGAAACGTATTAAAGTCTTCGAATTTTCCACTGTTGTTAATG
AACCATCAGATGTGCATTGCCCAGTTGTTGAAATGGCTACCAGATCTAAACTTAGCTGCC
TAAGCTGGAACAAGTACTCAAAAAATATTATTGCAAGCAGTGACTATGAGGGTATAGTAA
CTGTGTGGGATGTTCAGACCCGTCAGAGTGTGATGGAATATGAAGAGCATGAGAAGAGAG
CATGGAGTGTTGATTTTTCTCGCACAGACTCTTCAATGCTAGTATCTGGGAGTGATGATT
GCAAGGTGAAAGTGTGGTGCACAAATCAAGAAGCAAGTGTGATCAATATTGATATGAAAG
CAAATATTTGCTCGGTTAAATATAATCCTGGATCAAGCTTCTACGTTGCAGTCGGATCTG
CTGATCACCATATTCATTACTTTGATTTACGTAATCCAAGTTCGCCTGTCCATATTTTTG
GGGGGCACAAGAAAGCAGTATCATATGTGAAATTCTTATCTAACAATGAGCTTGCGTCTG
CATCAACAGATAGCACATTACGCTTATGGGATGTCAAGGATAACTGCCCGGTACGGACAT
TCAGAGGACACAAAAATGAAAAGAACTTTGTTGGCTTGTCTGTGAACAATGAATATATTG
CTTGTGGAAGTGAGACAAATGAGGTTTTTGTTTATCACAAGGCTATCTCGAAACCGGCAG
CAAGCCATAGATTTGTATCTTCTGACCTGGATGATGCCGATGATGATCCTGGTTCTTATT
TCATTAGTGCTGTCTGCTGGAAGAGTGATAGCCCTACGATGTTAACTGCTAACAGTCAGG
GGACCATAAAAGTTCTTGTACTTGCTCCTTGATGTTATGGAGGGCGTTCAAGAGGTTCAC
AGTACTGTCCAGTTGTTTCCTTTCGTGTCATTATATTCCCCCAAAATTGGGAACGGGGGC
ATAATTGATCTCCGGTTAGGGAATGAAGTTTTGCAGATGGTCAGCTGACGTAGGGTTTTG
AGGTATCAGAATGTGCATAGTCATGTTTATGTTGTATAGGTGTAATTGTGTAAAGCAGCC
AAGTTATTGGTTACAAGTGTAACACGAGAAATACACATTAATAAAAAAAAAACCTCCAGC
TCGTTTGTACAGAGATTGTGCTTGAACCCAGAACCTTATGTGGTAATTGCGATTGGTAAT
ATATCTACCTGATATG