Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d018159_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:5:215718401:215720596:-1 gene:Zm00001d018159 gene_biotype:protein_coding transcript_biotype:protein_coding description:Alpha-amylase 1
Sequence	ATGGCGAACAGGGGCTTGCATCTGGCTCTGTTCCTCGTCCTTCTCGGGCTGTCGTCCAAT TTGGCAGCCGGGCAGATCCTGTTCCAGGGCTTCAACTGGGAGTCGTGGAAGCAGAACGGG GGATGGTACAACTTCCTGATGGGCAAGGTGGACGACATCGCCGAGGCCGGCATCACGCAC GTCTGGCTCCCTCCGGCGTCACACTCTCTCGCCGAGCAAGGCTACCTGCCGGGGCGCCTG TACGACCTTGACGCGTCCAAGTACGGCAACGAGGCGCAGCTCAAGTCCCTGATCGAGGCG TTCCACAGCAAGGGCGTGAAGGTCATCGCCGACATCGTCATCAACCACCGCACGGCGGAG CACCAGGACGGCCGCGGCATCTACTGCATCTTCGAGGGCGGCACGCCGGACTCCCGCCTC GACTGGGGCCCCCACATGATCTGCAGCGACGACAGGGCGTACTCCGACGGCACGGGGAAC CCCGACACCGGCGCCGACTTCGGCGGCGCGCCGGACATCGACCACCTGAACCCGCGCGTC CAGCAGGAGCTCACCGGCTGGCTCAACTGGCTCAAGACGGACGTCGGCTTCGACGCGTGG CGCCTCGACTTCGCCAAGGGCTACTCCGCCGACGTCGCCAAGGTCTACATCGACGGCACC CAGCCCTGCTTCGCCGTCGCCGAGATATGGACCTCGCTGGCCTACGGCGGCGACGGCAAG CCCTTCTACGACCAGAACGCGCACCGGCAGGAGCTGGTGAGCTGGCTGGACCGCGTCGGC GGCAAGGCCAGCCCGGCCACCACGTTCGACTTCACCACCAAGGGCATCCTCAACGTGGCC GTCGACGGCGAGCTGTGGCGGCTGCGCGGCGCTGACGGCAAGGCACCCGGTTTGATCGGG TGGTGGCCGGCCAAGGCCGTCACCTTCGTCGACAACCACGACACTGGCTCCACGCAGCAC ATGTGGCCGTTCCCCGCCGACAAGGTCATGCAGGGCTACGCCTACATCCTCACGCACCCC GGGAACCCATCCATCTTCTACGATCACTTCTTCGACTGGGGCCTCAAGAACGAGATCGCG CACCTGGTGTCCATCAGGGACCGCCACGGGATCCAGGCGGACAGTGAGCTGCGCATCATC GAGGCCGACGCCGACCTCTACCTCGCTGAGATCGACGGCAAGGTCATCGTGAAGATTGGA TCAAGATACGACTGCGGGCACCTCATCCCAGAAGGCTTCCAGGTCGTGGCGCACGGAGAT GGCTATGCCGTCTGGGAGAAAAACTGA

Peptide Sequence

PEP ID	Zm00001d018159_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:5:215718401:215720596:-1 gene:Zm00001d018159 transcript:Zm00001d018159_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Alpha-amylase 1
Sequence	MANRGLHLALFLVLLGLSSNLAAGQILFQGFNWESWKQNGGWYNFLMGKVDDIAEAGITH VWLPPASHSLAEQGYLPGRLYDLDASKYGNEAQLKSLIEAFHSKGVKVIADIVINHRTAE HQDGRGIYCIFEGGTPDSRLDWGPHMICSDDRAYSDGTGNPDTGADFGGAPDIDHLNPRV QQELTGWLNWLKTDVGFDAWRLDFAKGYSADVAKVYIDGTQPCFAVAEIWTSLAYGGDGK PFYDQNAHRQELVSWLDRVGGKASPATTFDFTTKGILNVAVDGELWRLRGADGKAPGLIG WWPAKAVTFVDNHDTGSTQHMWPFPADKVMQGYAYILTHPGNPSIFYDHFFDWGLKNEIA HLVSIRDRHGIQADSELRIIEADADLYLAEIDGKVIVKIGSRYDCGHLIPEGFQVVAHGD GYAVWEKN

Transcript Sequence

Transcript ID	Zm00001d018159_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:5:215718401:215720596:-1 gene:Zm00001d018159 gene_biotype:protein_coding transcript_biotype:protein_coding description:Alpha-amylase 1
Sequence	ATCCAGCCATCGATTCTCCTCCAGTTCATAGGCACAGCAGCAGAAAGCGCCAGGAGCTTA AGAACATGGCGAACAGGGGCTTGCATCTGGCTCTGTTCCTCGTCCTTCTCGGGCTGTCGT CCAATTTGGCAGCCGGGCAGATCCTGTTCCAGGGCTTCAACTGGGAGTCGTGGAAGCAGA ACGGGGGATGGTACAACTTCCTGATGGGCAAGGTGGACGACATCGCCGAGGCCGGCATCA CGCACGTCTGGCTCCCTCCGGCGTCACACTCTCTCGCCGAGCAAGGCTACCTGCCGGGGC GCCTGTACGACCTTGACGCGTCCAAGTACGGCAACGAGGCGCAGCTCAAGTCCCTGATCG AGGCGTTCCACAGCAAGGGCGTGAAGGTCATCGCCGACATCGTCATCAACCACCGCACGG CGGAGCACCAGGACGGCCGCGGCATCTACTGCATCTTCGAGGGCGGCACGCCGGACTCCC GCCTCGACTGGGGCCCCCACATGATCTGCAGCGACGACAGGGCGTACTCCGACGGCACGG GGAACCCCGACACCGGCGCCGACTTCGGCGGCGCGCCGGACATCGACCACCTGAACCCGC GCGTCCAGCAGGAGCTCACCGGCTGGCTCAACTGGCTCAAGACGGACGTCGGCTTCGACG CGTGGCGCCTCGACTTCGCCAAGGGCTACTCCGCCGACGTCGCCAAGGTCTACATCGACG GCACCCAGCCCTGCTTCGCCGTCGCCGAGATATGGACCTCGCTGGCCTACGGCGGCGACG GCAAGCCCTTCTACGACCAGAACGCGCACCGGCAGGAGCTGGTGAGCTGGCTGGACCGCG TCGGCGGCAAGGCCAGCCCGGCCACCACGTTCGACTTCACCACCAAGGGCATCCTCAACG TGGCCGTCGACGGCGAGCTGTGGCGGCTGCGCGGCGCTGACGGCAAGGCACCCGGTTTGA TCGGGTGGTGGCCGGCCAAGGCCGTCACCTTCGTCGACAACCACGACACTGGCTCCACGC AGCACATGTGGCCGTTCCCCGCCGACAAGGTCATGCAGGGCTACGCCTACATCCTCACGC ACCCCGGGAACCCATCCATCTTCTACGATCACTTCTTCGACTGGGGCCTCAAGAACGAGA TCGCGCACCTGGTGTCCATCAGGGACCGCCACGGGATCCAGGCGGACAGTGAGCTGCGCA TCATCGAGGCCGACGCCGACCTCTACCTCGCTGAGATCGACGGCAAGGTCATCGTGAAGA TTGGATCAAGATACGACTGCGGGCACCTCATCCCAGAAGGCTTCCAGGTCGTGGCGCACG GAGATGGCTATGCCGTCTGGGAGAAAAACTGAGCCAAATCTGTGCCTGATCCGTCCGTCC GGTCCGGCACGACGAGTTTTAGCGGATTTGACCTGCATTTTCCTTAGCTTATTATTACTC CAAATACGGGATATATATAGCGACAACCTGTATTCGAGATACATGCGTGCCCCCAGGGAC GCGGAAAAAGAAAGAGAAGCACGCGTGTCAGGACAGCCGAAAGAAGAACTTGTGAAGATT ATTTTTTCCCCTTAAGGGCTAGTTTGGAAACCCTTTTTTATGGGATTTTCATTAATTTTC CTTGGGAAAATTAGAATCACTTAGGGGGGATTTGAGTTTCGAAACTAGCCCTTAGGAAAA CGGTGTTTACAAACTAGCCTAGAAATAAAAAAGTCACGGAAGGTGTCGGATGATTGGCTC T