Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d018133_T020
CDS Infomation

cds chromosome:B73_RefGen_v4:5:215037344:215049707:1 gene:Zm00001d018133 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGTCGAAGCGTGCGTCAGAGCTAGTTAGTGAAGGGGCTGCATCAAAGCCCAAGAAAACA
ATAGGCAAGATGAAGGTTCAAGTTCGCAAAGTTCGGATGTCTGTAGATATGCCTTCTGGT
TGCAACTTATCATCACTGCCAATGGTGAAATTGGATTCTGTCCGGTACCGTTTGTCCAAT
GTACAATCCACACTTTCATCAGGATGGGAGTCTGTACGGAGAGTTCGAGTTCTACCACAG
CTTCCTGCTAACAGTTCGTTCTCAAAGCACAGCTTAGCATACATGCAAGCAAGTGCTCAG
TATATCAAGCAGGTGTCTGGCCTATTAAAGGTCGGTGTAACTACTCTGCGGAGCAGTTCA
GCCTATGAAGCACCACAAGAAACATACTCCTGCCAGTTGAGGCTTAAAAGTTCACCTGAA
GATGATGTGGTACCTATGCAGCCAGGATCTGGTGAAACACATGTCTTCTTTCCTGATAGC
CTCGGAGATGATTTGATCATCGATGTGTCTGATTCAAAGGGAAAGTCTTGTGGTCGTGTT
GTTGCCCAAGTTGCTACAATGGCTGAGGATCATGCTGACAAGCTACGCTGGTGGTCAATC
TTCCGAGAACCGGAGCATGAACTTGTGGGTCGTATACAGCTATATATCCACTATACAACT
GCTGCTGATGAGAACAATATGAAGTATGGTTCTGTTGCAGAAACTGTAGCATATGATATT
GTTTTGGAAGTTGCAATGAAAGCACAACGCATTCAACAAAGGAACCTTGTTGTGCATGGC
TCCTGGAAGTGGTTATTGACAGAATTTGCATTGTATTATGGGGTTTCAGATGCCTACACG
AGGTTGAGGTCTTATATCATGGATGTTGCAACTCCTACCGCTGATTGGCTCAATCTGGTT
CACGGGCTTTTGTTACCTATACTGATGAAAAGCGATGGTACTGCTACTTTGAGCCACCAA
GAGAACCGAATACTGGGGGAAGTTGAAGAGCAAATTGAGCAAACTCTAGCTATGGTTTGT
GAGAATTACAAGTCGCTAGATGACTCTATACCGTTGGGTTTGGCGGAAGATTTTAGGCCT
CCAACTGGATTGGCTGCTGCTGCTCTGGAACCAGCTATTAAGTTGTACAGTCTTCTACAC
GACGTCCTATCTCCGGAAGCTCAACTAAGATTGTGTGGTTACTTCCAGGCAGCTGCCAGG
AAGCGTACGAGGCGTTACATGATTGAAACTGATGAGTATGTATCAGGAAATTCAGAAGGC
TTCAGGGTAGACTTGGTAACCGTTACCACGGCTTACCAGAAGATGAAATCATTATGCAAC
AATCTACGAAGTGAAATTTTTACTGATATTGAAATCCATAATCAGCACATACTTCCCAGT
TTTGTTGATCTGCCAAATTTAGCTGCCTCCATCTATAGTGTAGAGCTGTCAAATCGTCTA
CGCGCTTTTCTTGTTGCTTGCCCTCCTGCTGGTCCAGCATCACCTGTTGCTGATTTGGTG
GTTGCCACAGCTGATTTTCAGAAGGATCTGGCTAGCTGGAATATCTGCAATATAAAAGCA
GGTGTTGATGCAAAAGAGCTGTTCCATTTGTACATTGTATTGTGGATTGAAGACAAACGC
AGGATGTTACTGGAAAACTGCAGACTGGACAAGGTCAAATGGTCAGGAGTTAGGACCCAG
CATATGACAACACCTTTTGTGGATGAGATGTATGATTTGCTGAAGAAGACATTGACAGAG
TATGAAGTTATCATTTGTCGATGGCCAGAATACATATTTGTTCTCGAGAATGCTATTGCA
GATGTTGAGAAAGCGGTTATCGAGTCTCTGGAAAAACAGTATGCAGATGTTTTGGCTCCA
CTGAAGGATTGTATTGCACCAAAAAAATTTGGCCTCAAAGTTGTCCAGAAACTCACAAAG
CGCAATTCAACGGTGCCCTACACTGTACCTGAAGATCTTGGCATTCTCTTGAATACATTG
AAAAGATTACTTGAGGTTTTGCGACCTCGGATTGAGAGTCACTTGAAATCATGGAGTTCT
TGTATACCTAATGGAGGAAATTCTGCGGCCATTGGAGAAAAACTTAGTGAAGTTACAGTG
ACATTGAGAGCTAAATTCCGAAATTACATGCAAGCAGTTGTTGAGAAGCTTTCGGAGAAT
ACCCGTATGCAAAATACCACAAAGCTCAAAAAGATCATTCAGGATTCAAAAGAGTTGGTT
ATTGAATCTGATATCCGCAGCAGGATGCAGGCCTTGAAGGATCAGCTAATTGAGGCAATA
AATCATGTGCACAAAGTATCTGAAGTACATGTTTTTTTAGCCATATGCCGAGGTTTTTGG
GACCGGATGGGACAGGATGTGCTGAGTTTCCTGGAGAATCGCAAAGAAAACAAAGCCTGG
TATAAAGGTGCACGAGTCGCAATCTCAGTATTGGATGATACTTTTGCATCCCAGCTGCAA
CAGCTGCTAGGTAATACAGTCCCACCGAAGGACCTAGAGCCACCCAGATCTATCGTGGAA
GTTCGTTCTATTCTCTGCAAAGATGCACCCCGCCAGAAGAATTCTAGTTTCTATTATTGA

Peptide Sequence

PEP ID

Zm00001d018133_P020
PEP Infomation

pep chromosome:B73_RefGen_v4:5:215037344:215049707:1 gene:Zm00001d018133 transcript:Zm00001d018133_T020 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MSKRASELVSEGAASKPKKTIGKMKVQVRKVRMSVDMPSGCNLSSLPMVKLDSVRYRLSN
VQSTLSSGWESVRRVRVLPQLPANSSFSKHSLAYMQASAQYIKQVSGLLKVGVTTLRSSS
AYEAPQETYSCQLRLKSSPEDDVVPMQPGSGETHVFFPDSLGDDLIIDVSDSKGKSCGRV
VAQVATMAEDHADKLRWWSIFREPEHELVGRIQLYIHYTTAADENNMKYGSVAETVAYDI
VLEVAMKAQRIQQRNLVVHGSWKWLLTEFALYYGVSDAYTRLRSYIMDVATPTADWLNLV
HGLLLPILMKSDGTATLSHQENRILGEVEEQIEQTLAMVCENYKSLDDSIPLGLAEDFRP
PTGLAAAALEPAIKLYSLLHDVLSPEAQLRLCGYFQAAARKRTRRYMIETDEYVSGNSEG
FRVDLVTVTTAYQKMKSLCNNLRSEIFTDIEIHNQHILPSFVDLPNLAASIYSVELSNRL
RAFLVACPPAGPASPVADLVVATADFQKDLASWNICNIKAGVDAKELFHLYIVLWIEDKR
RMLLENCRLDKVKWSGVRTQHMTTPFVDEMYDLLKKTLTEYEVIICRWPEYIFVLENAIA
DVEKAVIESLEKQYADVLAPLKDCIAPKKFGLKVVQKLTKRNSTVPYTVPEDLGILLNTL
KRLLEVLRPRIESHLKSWSSCIPNGGNSAAIGEKLSEVTVTLRAKFRNYMQAVVEKLSEN
TRMQNTTKLKKIIQDSKELVIESDIRSRMQALKDQLIEAINHVHKVSEVHVFLAICRGFW
DRMGQDVLSFLENRKENKAWYKGARVAISVLDDTFASQLQQLLGNTVPPKDLEPPRSIVE
VRSILCKDAPRQKNSSFYY

Transcript Sequence

Transcript ID

Zm00001d018133_T020
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:215037344:215049707:1 gene:Zm00001d018133 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATTATGACCAGGACCATCAGCCAGTAACTCATGATGATACTCGGTCTTGTGATAATTCAA
ATTTCACCAATGGCTTATCTGCCAAAAAAGATCACCGGGAAGTCAATGGAGGAGTAAACT
TAGCTGACAAAAATGACAGGAGCACTTTGAATGCAGGACCAACAAGCAAGCCATCTAGTT
CGATTCCTATTCGAGTCCCAACCTTTCATGCCAGTCTGCAGGGGCCCTGGTATTCTGTAC
TTGCTTATGATGCTTGCGTCCGCCTTTGCCTTCATGCATGGGCTAGAGGCTGTATGGAAG
CTCCCGTTTTTCTCGAAAATGAATGCACACTCTTGAGAAATACATTCAGGTAAGTCAACT
CTTGCACATAATTGAAGATAGGTCACTAGAATCAAACTATAAGGATGCCATTACTTATAT
ATTGTATCTGCACTGTGCTTGCTGCCTCTAGCAACTGTCAGTTCTGTCTTTGACGAGGAA
TTGAGGATAGCCAGAATTGTGCAATGTAGGAACGTGTCTATTCTAGCATTCTTCTTGGTT
ATAGCTGCTGTTGTCCACTATGATATGGGATTTTCTTTTCATTAATCCATCATGATGAAA
TGATATTGACTGTGAGACACATCGTGCGTTTTTGTTCAAGGTCAGCTATGTTGGAATACA
GTATAAGTGAAGTGCCCACCTCTTCCTATCAGCTTAAGCTTTTGGGTTGGACTGGTTGGC
GCATGTAACTTAATAAACTATACCAAAAATCAGTAGGAGTGCAAATCCTACCTGTCCTGC
GTGCTATATAGCCATGTTATCAAAATCATTCAGGTTGCATGATTCTACATATTAGTTTAA
ATATATTCCGTAAGCAAAATACATCTCTAAAATTAAGTTAGTTGCTTAAATTTAAAAAAT
GTAACCTACAGTTACTATTGGATATTGTAAAGCACAGAAGATATTAAATTACTCAAAGTT
ATTTCTTTGAATGTCTACAACAATCTACATATGCATTTTGAACCAACATGGTACAATTAT
CTTAAGAATAGCAAATTTCAGCAAGGTCCCAAATACCATTAACTAAACATGCTATTTTTC
TCTACCACATTCAATATGCTATGAACTTTTTTTGTATTTTTGCGCTTCATTCACAAGCTT
ATTAGTTATTCATTGCTCATGCTGGTTTCTGTACATATCTTCTTTTGTTACACTTTTATT
TAAGGTGGCACTTGAGTAAGCCTTGACATTCTTGAGTGTTTCATTTAGCTTGCAAAATGT
CTTGTTACAATCGGAAGAGGAGCTTATGTCGAAGCGTGCGTCAGAGCTAGTTAGTGAAGG
GGCTGCATCAAAGCCCAAGAAAACAATAGGCAAGATGAAGGTTCAAGTTCGCAAAGTTCG
GATGTCTGTAGATATGCCTTCTGGTTGCAACTTATCATCACTGCCAATGGTGAAATTGGA
TTCTGTCCGGTACCGTTTGTCCAATGTACAATCCACACTTTCATCAGGATGGGAGTCTGT
ACGGAGAGTTCGAGTTCTACCACAGCTTCCTGCTAACAGTTCGTTCTCAAAGCACAGCTT
AGCATACATGCAAGCAAGTGCTCAGTATATCAAGCAGGTGTCTGGCCTATTAAAGGTCGG
TGTAACTACTCTGCGGAGCAGTTCAGCCTATGAAGCACCACAAGAAACATACTCCTGCCA
GTTGAGGCTTAAAAGTTCACCTGAAGATGATGTGGTACCTATGCAGCCAGGATCTGGTGA
AACACATGTCTTCTTTCCTGATAGCCTCGGAGATGATTTGATCATCGATGTGTCTGATTC
AAAGGGAAAGTCTTGTGGTCGTGTTGTTGCCCAAGTTGCTACAATGGCTGAGGATCATGC
TGACAAGCTACGCTGGTGGTCAATCTTCCGAGAACCGGAGCATGAACTTGTGGGTCGTAT
ACAGCTATATATCCACTATACAACTGCTGCTGATGAGAACAATATGAAGTATGGTTCTGT
TGCAGAAACTGTAGCATATGATATTGTTTTGGAAGTTGCAATGAAAGCACAACGCATTCA
ACAAAGGAACCTTGTTGTGCATGGCTCCTGGAAGTGGTTATTGACAGAATTTGCATTGTA
TTATGGGGTTTCAGATGCCTACACGAGGTTGAGGTCTTATATCATGGATGTTGCAACTCC
TACCGCTGATTGGCTCAATCTGGTTCACGGGCTTTTGTTACCTATACTGATGAAAAGCGA
TGGTACTGCTACTTTGAGCCACCAAGAGAACCGAATACTGGGGGAAGTTGAAGAGCAAAT
TGAGCAAACTCTAGCTATGGTTTGTGAGAATTACAAGTCGCTAGATGACTCTATACCGTT
GGGTTTGGCGGAAGATTTTAGGCCTCCAACTGGATTGGCTGCTGCTGCTCTGGAACCAGC
TATTAAGTTGTACAGTCTTCTACACGACGTCCTATCTCCGGAAGCTCAACTAAGATTGTG
TGGTTACTTCCAGGCAGCTGCCAGGAAGCGTACGAGGCGTTACATGATTGAAACTGATGA
GTATGTATCAGGAAATTCAGAAGGCTTCAGGGTAGACTTGGTAACCGTTACCACGGCTTA
CCAGAAGATGAAATCATTATGCAACAATCTACGAAGTGAAATTTTTACTGATATTGAAAT
CCATAATCAGCACATACTTCCCAGTTTTGTTGATCTGCCAAATTTAGCTGCCTCCATCTA
TAGTGTAGAGCTGTCAAATCGTCTACGCGCTTTTCTTGTTGCTTGCCCTCCTGCTGGTCC
AGCATCACCTGTTGCTGATTTGGTGGTTGCCACAGCTGATTTTCAGAAGGATCTGGCTAG
CTGGAATATCTGCAATATAAAAGCAGGTGTTGATGCAAAAGAGCTGTTCCATTTGTACAT
TGTATTGTGGATTGAAGACAAACGCAGGATGTTACTGGAAAACTGCAGACTGGACAAGGT
CAAATGGTCAGGAGTTAGGACCCAGCATATGACAACACCTTTTGTGGATGAGATGTATGA
TTTGCTGAAGAAGACATTGACAGAGTATGAAGTTATCATTTGTCGATGGCCAGAATACAT
ATTTGTTCTCGAGAATGCTATTGCAGATGTTGAGAAAGCGGTTATCGAGTCTCTGGAAAA
ACAGTATGCAGATGTTTTGGCTCCACTGAAGGATTGTATTGCACCAAAAAAATTTGGCCT
CAAAGTTGTCCAGAAACTCACAAAGCGCAATTCAACGGTGCCCTACACTGTACCTGAAGA
TCTTGGCATTCTCTTGAATACATTGAAAAGATTACTTGAGGTTTTGCGACCTCGGATTGA
GAGTCACTTGAAATCATGGAGTTCTTGTATACCTAATGGAGGAAATTCTGCGGCCATTGG
AGAAAAACTTAGTGAAGTTACAGTGACATTGAGAGCTAAATTCCGAAATTACATGCAAGC
AGTTGTTGAGAAGCTTTCGGAGAATACCCGTATGCAAAATACCACAAAGCTCAAAAAGAT
CATTCAGGATTCAAAAGAGTTGGTTATTGAATCTGATATCCGCAGCAGGATGCAGGCCTT
GAAGGATCAGCTAATTGAGGCAATAAATCATGTGCACAAAGTATCTGAAGTACATGTTTT
TTTAGCCATATGCCGAGGTTTTTGGGACCGGATGGGACAGGATGTGCTGAGTTTCCTGGA
GAATCGCAAAGAAAACAAAGCCTGGTATAAAGGTGCACGAGTCGCAATCTCAGTATTGGA
TGATACTTTTGCATCCCAGCTGCAACAGCTGCTAGGTAATACAGTCCCACCGAAGGACCT
AGAGCCACCCAGATCTATCGTGGAAGTTCGTTCTATTCTCTGCAAAGATGCACCCCGCCA
GAAGAATTCTAGTTTCTATTATTGATGATCAGGCTTAACTGTACATAGTAGTCATGCGCT
GCGCGTGCAGCTTTTCTCTTGGAGAGAAAAGCTCCAAAGTGCCCAAATAGCCGGATCTTT
ATAAAGAAACTAGAGGAGGCTCAATGGTATCTGAGAAGCTTGCCTTGTGTTACACCATAT
CTTTTTGCTAGTTAAATTGGCTATGTTCCCATTGCCTGTGGATGTGGACTACATTCGGAA
AGTGGATTGTGCTTCAGAGTGTAGTCCAATTGACATTGTAGGTTAGCTTCATTGGTAACA
CTTACCTGTGGTTAAGCAGTTGCTCTATTTGTTCTTAGGGATTTTTTTGAAACAACAAAA
AAGAACTTTCTG