Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d018061_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:5:213495907:213498656:1 gene:Zm00001d018061 gene_biotype:protein_coding transcript_biotype:protein_coding description:Shikimate kinase

Sequence

ATGGAGGCGGGGGGCGTCGGCCTGGCGCTGCAGGCGCGGGCGGCGGGCTTCGGCTCCAGC
CGGCACCGGGGCGGCCTACAGGCGCCCACCGGGAGCCTGAGAGTCGCTGACCCGGCGGGA
CCTGCGGTCGCTGTGCGGGCTCGCGGGTCCAAGCCCGTCGCACCGCTCCGACTCCGTGCG
AAGAAATCGTCCGGAGGTCATGAAAACTCGCACAACTCCGTTGACGAAGCTCTCCTGTTG
AAGAGAAAATCAGAAGAAGTTCTGTTCTACTTGAACGGGAGGTGTATTTACCTAGTAGGA
ATGATGGGTTCTGGAAAAAGTACTGTGGGGAAGATTATGTCTGAAGTCTTGGGTTATTCG
TTCTTTGATAGTGACAAGTTAGTGGAGCAAGCTGTTGGAATGCCATCAGTTGCCCAAATA
TTCAAGGTCCATAGTGAAGCCTTCTTTCGGGATAATGAGAGTAGTGTCTTGAGAGATTTG
TCCTCCATGCGACGATTAGTTGTTGCCACCGGAGGTGGTGCTGTTATCCGACCAATTAAC
TGGAGATATATGAAGAGGGGCCTATCTGTTTGGTTAGATGTGCCCTTGGATGCTCTTGCT
AGGCGTATTGCTAAAGTGGGAACTGCCTCTCGTCCTCTTCTGGACCAACCATCTGGTGAT
CCGTACGCAATGGCCTTTTCTAAGCTCAGCATGCTTGCACAGCAAAGGGGTGATGCTTAT
GCAAATGCAGATGTAAGGGTTTCTCTGGAAGAGATTGCATGTAAACAAGGTCATGATGAT
GTCTCTAAGCTGACACCTACTGATATTGCAATTGAGTCACTTCATAAGATCGAGAGCTTC
GTCATCGAGCACACTGCTGATAGTTCAGCTAGCGACGCGCAAGCTGAGTCGCAGATCCAG
AGGATACAGACCTTGTAG

Peptide Sequence

PEP ID

Zm00001d018061_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:5:213495907:213498656:1 gene:Zm00001d018061 transcript:Zm00001d018061_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:Shikimate kinase

Sequence

MEAGGVGLALQARAAGFGSSRHRGGLQAPTGSLRVADPAGPAVAVRARGSKPVAPLRLRA
KKSSGGHENSHNSVDEALLLKRKSEEVLFYLNGRCIYLVGMMGSGKSTVGKIMSEVLGYS
FFDSDKLVEQAVGMPSVAQIFKVHSEAFFRDNESSVLRDLSSMRRLVVATGGGAVIRPIN
WRYMKRGLSVWLDVPLDALARRIAKVGTASRPLLDQPSGDPYAMAFSKLSMLAQQRGDAY
ANADVRVSLEEIACKQGHDDVSKLTPTDIAIESLHKIESFVIEHTADSSASDAQAESQIQ
RIQTL

Transcript Sequence

Transcript ID

Zm00001d018061_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:213495907:213498656:1 gene:Zm00001d018061 gene_biotype:protein_coding transcript_biotype:protein_coding description:Shikimate kinase

Sequence

GTCAGAGATTCGAGTTGAGCTATAGGCGTAGCCGACTGGTCGCCGCGTCCCCTCTCGGCT
CCACCCGGCGAGCGAACAATGGAGGCGGGGGGCGTCGGCCTGGCGCTGCAGGCGCGGGCG
GCGGGCTTCGGCTCCAGCCGGCACCGGGGCGGCCTACAGGCGCCCACCGGGAGCCTGAGA
GTCGCTGACCCGGCGGGACCTGCGGTCGCTGTGCGGGCTCGCGGGTCCAAGCCCGTCGCA
CCGCTCCGACTCCGTGCGAAGAAATCGTCCGGAGGTCATGAAAACTCGCACAACTCCGTT
GACGAAGCTCTCCTGTTGAAGAGAAAATCAGAAGAAGTTCTGTTCTACTTGAACGGGAGG
TGTATTTACCTAGTAGGAATGATGGGTTCTGGAAAAAGTACTGTGGGGAAGATTATGTCT
GAAGTCTTGGGTTATTCGTTCTTTGATAGTGACAAGTTAGTGGAGCAAGCTGTTGGAATG
CCATCAGTTGCCCAAATATTCAAGGTCCATAGTGAAGCCTTCTTTCGGGATAATGAGAGT
AGTGTCTTGAGAGATTTGTCCTCCATGCGACGATTAGTTGTTGCCACCGGAGGTGGTGCT
GTTATCCGACCAATTAACTGGAGATATATGAAGAGGGGCCTATCTGTTTGGTTAGATGTG
CCCTTGGATGCTCTTGCTAGGCGTATTGCTAAAGTGGGAACTGCCTCTCGTCCTCTTCTG
GACCAACCATCTGGTGATCCGTACGCAATGGCCTTTTCTAAGCTCAGCATGCTTGCACAG
CAAAGGGGTGATGCTTATGCAAATGCAGATGTAAGGGTTTCTCTGGAAGAGATTGCATGT
AAACAAGGTCATGATGATGTCTCTAAGCTGACACCTACTGATATTGCAATTGAGTCACTT
CATAAGATCGAGAGCTTCGTCATCGAGCACACTGCTGATAGTTCAGCTAGCGACGCGCAA
GCTGAGTCGCAGATCCAGAGGATACAGACCTTGTAGAACCTTAATCCCTTTGTTTGCCAC
ATAGAGCATCGTTGAGTTATTTGTAAAGGAATGGAAGAAGGGAGCTAATAATCCGAAGTG
TGCCGTTGGCTGAAACATCGCCTGTCTTCACTCCTGGCTCTGCTTCTGTTCGCTTCTCAT
CGTGGTTTGATACCTTGGTGGACATCTATGCTGACACCTCATCTCACCAAACATACTTGC
ATACCGTCGTCGCCCGCTCGAACGAAGAAACAAAGTGCCGTTTGGTTCATATATTTGTAA
TGTAATGGGTAACTGATAATGTTAAATCATATTTGTTTTAGTCCAACCGTAATCAGATAC
CATACTAGATATCAGTCTATATGTAATGAGTAACTGATAATGTTAAATCATATTTGTTTT
AGT