Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d017985_T005
CDS Infomation

cds chromosome:B73_RefGen_v4:5:211401546:211405819:-1 gene:Zm00001d017985 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pyruvate dehydrogenase E1 component alpha subunit

Sequence

ATGGCCGCGGCCGCGCTCCTTCGCCGCATCCCCGCCGCGCGGGCCCCGGCCACGGCCTTC
ATGGCGGCGCGTCCGGTCTCCGACTCCCTCTATAAGGCCAAGCTCATCCGCGGGTTCTGC
CACCTCTACGACGGCCAGGAGGCCGTCGCCGTCGGCATGGAGGCCGCCATCACCCGCTCC
GATTCCATCATCACCGCCTACCGCGACCACTGTACCTACCTTGCCCGAGGAGGTGACCTC
GTCTCCGCCTTCTCCGAGCTGATGGGCCGCGAGGCCGGCTGCTCCCGCGGGAAGGGTGGA
TCCATGCATTTCTATAAGAAGGATGCCAATTTCTATGGCGGGCACGGCATCGTCGGCGCG
CAGGTGCCCCTCGGATGCGGCCTAGCCTTCGCTCAGAAGTACAAGAAGGAGGAGACGGCC
ACGTTTGCGCTCTATGGTGACGGTGCGGCTAACCAGGGACAGCTCTTTGAGGCTCTCAAC
ATTTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAGAACAACCATTATGGTATG
GGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTACAAGCGTGGCGACTATGTG
CCTGGATTGAAGGTTGATGGAATGGATGTTCTTGCTGTGAAGCAAGCGTGCAAATTTGCA
AAAGATCATGCTGTTGCAAATGGCCCAATTGTCCTTGAGATGGATACCTACAGGTACCAT
GGCCACTCTATGTCAGATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTC
AGGCAGGAACGGGACCCAATTGAAAGGGTTAGAAAGTTGCTTTTGGCTCACGACTTGGCA
ACTGCTGCTGAGCTCAAGGATATGGAGAAAGAAATCAGGAAACAAGTAGATGACGCCATT
GCAAAAGCAAAGGAAAGTTCTATGCCTGATACTTCTGAGCTCTTCACAAATGTTTATAAG
AAGGGATTCAACGTGGAGTCATTTGGGCCCGACAGGAAGGAGTTGAGAGCTACTCTTCCG
TAG

Peptide Sequence

PEP ID

Zm00001d017985_P005
PEP Infomation

pep chromosome:B73_RefGen_v4:5:211401546:211405819:-1 gene:Zm00001d017985 transcript:Zm00001d017985_T005 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pyruvate dehydrogenase E1 component alpha subunit

Sequence

MAAAALLRRIPAARAPATAFMAARPVSDSLYKAKLIRGFCHLYDGQEAVAVGMEAAITRS
DSIITAYRDHCTYLARGGDLVSAFSELMGREAGCSRGKGGSMHFYKKDANFYGGHGIVGA
QVPLGCGLAFAQKYKKEETATFALYGDGAANQGQLFEALNISALWKLPAILVCENNHYGM
GTAEWRAAKSPAYYKRGDYVPGLKVDGMDVLAVKQACKFAKDHAVANGPIVLEMDTYRYH
GHSMSDPGSTYRTRDEISGVRQERDPIERVRKLLLAHDLATAAELKDMEKEIRKQVDDAI
AKAKESSMPDTSELFTNVYKKGFNVESFGPDRKELRATLP

Transcript Sequence

Transcript ID

Zm00001d017985_T005
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:211401546:211405819:-1 gene:Zm00001d017985 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pyruvate dehydrogenase E1 component alpha subunit

Sequence

TCCTCTCCCTCTCCCTCTCCACGGCCCACGCCCACGCCCACCGCCCCATCCACCCCGAAA
CCCTAGCGGATCGTCGCCATGGCCGCGGCCGCGCTCCTTCGCCGCATCCCCGCCGCGCGG
GCCCCGGCCACGGCCTTCATGGCGGCGCGTCCGGTCTCCGACTCCCTCTATAAGGCCAAG
CTCATCCGCGGGTTCTGCCACCTCTACGACGGCCAGGAGGCCGTCGCCGTCGGCATGGAG
GCCGCCATCACCCGCTCCGATTCCATCATCACCGCCTACCGCGACCACTGTACCTACCTT
GCCCGAGGAGGTGACCTCGTCTCCGCCTTCTCCGAGCTGATGGGCCGCGAGGCCGGCTGC
TCCCGCGGGAAGGGTGGATCCATGCATTTCTATAAGAAGGATGCCAATTTCTATGGCGGG
CACGGCATCGTCGGCGCGCAGGTGCCCCTCGGATGCGGCCTAGCCTTCGCTCAGAAGTAC
AAGAAGGAGGAGACGGCCACGTTTGCGCTCTATGGTGACGGTGCGGCTAACCAGGGACAG
CTCTTTGAGGCTCTCAACATTTCGGCCCTCTGGAAGCTGCCCGCCATATTGGTTTGCGAG
AACAACCATTATGGTATGGGAACAGCGGAATGGAGGGCAGCGAAGAGTCCTGCTTACTAC
AAGCGTGGCGACTATGTGCCTGGATTGAAGGTTGATGGAATGGATGTTCTTGCTGTGAAG
CAAGCGTGCAAATTTGCAAAAGATCATGCTGTTGCAAATGGCCCAATTGTCCTTGAGATG
GATACCTACAGGTACCATGGCCACTCTATGTCAGATCCAGGAAGCACTTACCGCACCAGG
GATGAGATTTCAGGTGTCAGGCAGGAACGGGACCCAATTGAAAGGGTTAGAAAGTTGCTT
TTGGCTCACGACTTGGCAACTGCTGCTGAGCTCAAGGATATGGAGAAAGAAATCAGGAAA
CAAGTAGATGACGCCATTGCAAAAGCAAAGGAAAGTTCTATGCCTGATACTTCTGAGCTC
TTCACAAATGTTTATAAGAAGGGATTCAACGTGGAGTCATTTGGGCCCGACAGGAAGGAG
TTGAGAGCTACTCTTCCGTAGGTTGGGAGAATGGCAGTCCTCAATATGATATGATATCCA
GGAGAAATAAACATTGATGAAGAAGGCCTCAGACATTGCTGGAATTCTTTTGTTGGCAAA
TGAACCTATGTAGAGATCCGTTGTCAGGAGGATCTGCTTAGGGCTTGTTCGGTTAGCCTT
CAATCCATGTGGATTGAGTGGGATTGGATGGGTTTGAATCCCACGCAAGTCAAACTTCTT
CATAATTTTTTCCAAACCCATTCAATCCATGTGTATTGGGAAT