Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d017964_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:5:210959844:210965383:1 gene:Zm00001d017964 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative RNA-dependent RNA polymerase
Sequence	ATGTTCCAGGTTCAGGCAGCTCCTAAAATTTATAAACTGCTCCCAGGCCGTCCAGGTCTT ATGTTTGAGGATCCTTTCTTCAACTGGTTTAGGGATGACACAGATGAACAATGGACCAGG ACAATTGATTTTACTCCATCAGCTAGCATCGGGCAATCATCTATTTTATGTCTGGAGGTG CCACAACAGTGTGAGCTTCCAAGAATTGGCGACTACTTTGTTTACTATAAAGAGCAGAAT CTTGACTTTGAATGTCGGAATGGGTATTCATATTCCTGTGGTAGCAACCTTGTACCAATT GTGAAATCTCCTGATTACATAGAGGTCCCTTATGAGATACTCTTCAAAATCAACCATTTG GTTCAGAATGGGACACTCAGTGGGCCAACAGTTGATCATAGTTTCTTCCGTCATGTTAGC CCAAAATTTGAACCTATTGATCATATAAAACGAGCACTTTTAAAGATGACATATTTGAAA AGCACCTGCTTGAACCCAACAGATTGGTTATCTGTGCAATACTCCAGAATACGGAAATCA CGCCATGCATCACAAAAGTTATCTAATATATCTCTGGATGATGGCTTGGTCTATGTCCAC AGGGTGCAAGTTACCCCTGCTAAAGTGTATTTTTATGGACCTGAGATAAATGTCTCCAAT CGCGTTGTGCGGCATTTCTCTGCAGACATAGATAACTTCCTTCGGATTTCATTTGTTGAT GAAGACTGTGAGAAGCTCCGTTCAGCTGATTTGTCACCTCGATCTACTTCTGGAAATGAT GCAAGGAGAACTGCTCTGTATAATAGAGTTTTGTCAGTCCTTTCAAATGGCATCAATATT GGTGACAAGCACTTTGAGTTTCTTGCCTTTTCTTCAAGTCAGCTTCGAGATAACTCTGCA TGGATGTTTGCTTCTCGGCAGGGATTGACTGCGAGCGACATAAGGAAGTGGATGGGGGAC TTTCGAGATATCAGAAATGTGGCAAAGTATGCTGCAAGACTTGGGCAATCTTTCAGTTCC TCAACAGAAACTTTAAAAGTACACAAATCTGAGGTGGAACGAATTCCTGATATTACAAAT GGCACAAAGTACATATTCTCTGATGGAGTTGGAAAGATCTCAGCTAATTTTGCAGTGGAG GTGGCTATGAAGTGCAAATTGAAACGCTTTGCTCCTTCTGTTTTTCAGATAAGGTATGGC GGTTACAAAGGTGTTGTCGCTGTAGATACAAGATCAAATCATAAGCTTTCTTTGAGAAAA AGCATGTCAAAGTTCCAGTCAGAAAATATCACTCTTGATGTCCTTGCATACAGCAAGTAC CAACCATGCTTCCTGAATCGGCAGTTGATTACTCTTCTCTCAACACTTGGGGTTAGCGAT AATGTCTTTGAGCTAAAGCAGAAGGAAGCCTTAAGGCAGTTGAACAGAATGGTAACTGAA CCACAGGCTGCTCGTGAAGCAGTTGAACTTATGCCCATGGGAGAAGTAACCAATGTAGTT AAAGAATTGTTGTCATGTGGCTACCAGCCTGATCATGAGCCATATCTTTCCATGCTGCTA CAAACTTTTAGAGCATCCAAGCTTCTAGAGTTGAAAACAAAGTCAAGGATATTCATCACA CAGGGGCGAGCAATGATGGGTTGCCTGGATGAAACCTGCACACTTAAGTACGGCCAGGTA TTCGTCCAAGCTTCTTACAGTGCAGATGACCATCGCAAGGTCGTTGTAACTGGAAAAGTA GTTGTCGCCAAAAATCCTTGTCTCCACCCTGGTGACATACGGGTTCTCCAGGCTGTTGAT GTTCCTGCTCTGCACCACTTGTTTGACTGTGTTGTCTTTCCACAGCAGGGACCAAGGCAA GTGCCGCACCCTAACGAGTGTTCAGGGAGTGATCTTGATGGGGACATATATTTTGTTTCT TGGGATCCACATCTTATTCCGAGTCGTTTGGTGGATCCTATGGACTATACTCCAGCTTCA GCAGAAACATTAGACCATGATGTCACTATTGAGGAGATACAGGAGTACTTCACAAACTAC ATAGTTAATGAGAGTCTTGGGATTATCGCCAATGCGCATGTGGTCTTTGCAGATCAGGAA CGTATGAAGGCTGAGAGTCCACCGTGCGTTCAACTGGCCAAGCTCTTCTCTATAGCTGTC GATTTCCCAAAGACTGGAGTGCCGGCTCTGATTCCACATGAGCTACATGTCAAGGAGTAT CCTGACTTCATGGAGAAACTCGACAAAGTCACCTATGAATCAAAGGGTGTGATCGGGAAG CTCTATAGGGAAATAAAGAAGCACACACCACACATAAAGCACTTCACGAGGGAAGTGGCA AGGCGGTCTTATGACACCGATTTGATTGTTGATGGCTATGAAGATTACATTACTGAGGCT ATAGAGTTCAAGGAAGAGTACGATTTCAGGCTGGGTAATCTTATGGACCACTATGGCATA AAAAGTGAAGCTGAGATAATAAGTGGATGTATTCTAAAGATGGCAAAGAATTTCACCAAG AGTAGTGATGCTGATGCAATTAGAATGGCGGTGAGATCTTTGAGGAAAGAAGCTAGGTCG TGGTTCAATGAGATGAGCACAGGAGAGGATGGCCAAGATGCCATGGAGGCCAAGGCCTCT GCTTGGTACCATGTTACTTATCATCAGCAGTACTGGGGCAGCTACAATGAAGGGTATGAT CGGCCGCATCTTATTAGCTTCCCATGGTGCGTATATGACAAGCTTGTGGCCATCAAGCAG GGGAGGAATCTCCTCACGCGGATGGATCGAAACTTGAGGTTCCGTTGA

Peptide Sequence

PEP ID	Zm00001d017964_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:5:210959844:210965383:1 gene:Zm00001d017964 transcript:Zm00001d017964_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative RNA-dependent RNA polymerase
Sequence	MFQVQAAPKIYKLLPGRPGLMFEDPFFNWFRDDTDEQWTRTIDFTPSASIGQSSILCLEV PQQCELPRIGDYFVYYKEQNLDFECRNGYSYSCGSNLVPIVKSPDYIEVPYEILFKINHL VQNGTLSGPTVDHSFFRHVSPKFEPIDHIKRALLKMTYLKSTCLNPTDWLSVQYSRIRKS RHASQKLSNISLDDGLVYVHRVQVTPAKVYFYGPEINVSNRVVRHFSADIDNFLRISFVD EDCEKLRSADLSPRSTSGNDARRTALYNRVLSVLSNGINIGDKHFEFLAFSSSQLRDNSA WMFASRQGLTASDIRKWMGDFRDIRNVAKYAARLGQSFSSSTETLKVHKSEVERIPDITN GTKYIFSDGVGKISANFAVEVAMKCKLKRFAPSVFQIRYGGYKGVVAVDTRSNHKLSLRK SMSKFQSENITLDVLAYSKYQPCFLNRQLITLLSTLGVSDNVFELKQKEALRQLNRMVTE PQAAREAVELMPMGEVTNVVKELLSCGYQPDHEPYLSMLLQTFRASKLLELKTKSRIFIT QGRAMMGCLDETCTLKYGQVFVQASYSADDHRKVVVTGKVVVAKNPCLHPGDIRVLQAVD VPALHHLFDCVVFPQQGPRQVPHPNECSGSDLDGDIYFVSWDPHLIPSRLVDPMDYTPAS AETLDHDVTIEEIQEYFTNYIVNESLGIIANAHVVFADQERMKAESPPCVQLAKLFSIAV DFPKTGVPALIPHELHVKEYPDFMEKLDKVTYESKGVIGKLYREIKKHTPHIKHFTREVA RRSYDTDLIVDGYEDYITEAIEFKEEYDFRLGNLMDHYGIKSEAEIISGCILKMAKNFTK SSDADAIRMAVRSLRKEARSWFNEMSTGEDGQDAMEAKASAWYHVTYHQQYWGSYNEGYD RPHLISFPWCVYDKLVAIKQGRNLLTRMDRNLRFR

Transcript Sequence

Transcript ID	Zm00001d017964_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:5:210959844:210965383:1 gene:Zm00001d017964 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative RNA-dependent RNA polymerase
Sequence	ATGTTCCAGGTTCAGGCAGCTCCTAAAATTTATAAACTGCTCCCAGGCCGTCCAGGTCTT ATGTTTGAGGATCCTTTCTTCAACTGGTTTAGGGATGACACAGATGAACAATGGACCAGG ACAATTGATTTTACTCCATCAGCTAGCATCGGGCAATCATCTATTTTATGTCTGGAGGTG CCACAACAGTGTGAGCTTCCAAGAATTGGCGACTACTTTGTTTACTATAAAGAGCAGAAT CTTGACTTTGAATGTCGGAATGGGTATTCATATTCCTGTGGTAGCAACCTTGTACCAATT GTGAAATCTCCTGATTACATAGAGGTCCCTTATGAGATACTCTTCAAAATCAACCATTTG GTTCAGAATGGGACACTCAGTGGGCCAACAGTTGATCATAGTTTCTTCCGTCATGTTAGC CCAAAATTTGAACCTATTGATCATATAAAACGAGCACTTTTAAAGATGACATATTTGAAA AGCACCTGCTTGAACCCAACAGATTGGTTATCTGTGCAATACTCCAGAATACGGAAATCA CGCCATGCATCACAAAAGTTATCTAATATATCTCTGGATGATGGCTTGGTCTATGTCCAC AGGGTGCAAGTTACCCCTGCTAAAGTGTATTTTTATGGACCTGAGATAAATGTCTCCAAT CGCGTTGTGCGGCATTTCTCTGCAGACATAGATAACTTCCTTCGGATTTCATTTGTTGAT GAAGACTGTGAGAAGCTCCGTTCAGCTGATTTGTCACCTCGATCTACTTCTGGAAATGAT GCAAGGAGAACTGCTCTGTATAATAGAGTTTTGTCAGTCCTTTCAAATGGCATCAATATT GGTGACAAGCACTTTGAGTTTCTTGCCTTTTCTTCAAGTCAGCTTCGAGATAACTCTGCA TGGATGTTTGCTTCTCGGCAGGGATTGACTGCGAGCGACATAAGGAAGTGGATGGGGGAC TTTCGAGATATCAGAAATGTGGCAAAGTATGCTGCAAGACTTGGGCAATCTTTCAGTTCC TCAACAGAAACTTTAAAAGTACACAAATCTGAGGTGGAACGAATTCCTGATATTACAAAT GGCACAAAGTACATATTCTCTGATGGAGTTGGAAAGATCTCAGCTAATTTTGCAGTGGAG GTGGCTATGAAGTGCAAATTGAAACGCTTTGCTCCTTCTGTTTTTCAGATAAGGTATGGC GGTTACAAAGGTGTTGTCGCTGTAGATACAAGATCAAATCATAAGCTTTCTTTGAGAAAA AGCATGTCAAAGTTCCAGTCAGAAAATATCACTCTTGATGTCCTTGCATACAGCAAGTAC CAACCATGCTTCCTGAATCGGCAGTTGATTACTCTTCTCTCAACACTTGGGGTTAGCGAT AATGTCTTTGAGCTAAAGCAGAAGGAAGCCTTAAGGCAGTTGAACAGAATGGTAACTGAA CCACAGGCTGCTCGTGAAGCAGTTGAACTTATGCCCATGGGAGAAGTAACCAATGTAGTT AAAGAATTGTTGTCATGTGGCTACCAGCCTGATCATGAGCCATATCTTTCCATGCTGCTA CAAACTTTTAGAGCATCCAAGCTTCTAGAGTTGAAAACAAAGTCAAGGATATTCATCACA CAGGGGCGAGCAATGATGGGTTGCCTGGATGAAACCTGCACACTTAAGTACGGCCAGGTA TTCGTCCAAGCTTCTTACAGTGCAGATGACCATCGCAAGGTCGTTGTAACTGGAAAAGTA GTTGTCGCCAAAAATCCTTGTCTCCACCCTGGTGACATACGGGTTCTCCAGGCTGTTGAT GTTCCTGCTCTGCACCACTTGTTTGACTGTGTTGTCTTTCCACAGCAGGGACCAAGGCAA GTGCCGCACCCTAACGAGTGTTCAGGGAGTGATCTTGATGGGGACATATATTTTGTTTCT TGGGATCCACATCTTATTCCGAGTCGTTTGGTGGATCCTATGGACTATACTCCAGCTTCA GCAGAAACATTAGACCATGATGTCACTATTGAGGAGATACAGGAGTACTTCACAAACTAC ATAGTTAATGAGAGTCTTGGGATTATCGCCAATGCGCATGTGGTCTTTGCAGATCAGGAA CGTATGAAGGCTGAGAGTCCACCGTGCGTTCAACTGGCCAAGCTCTTCTCTATAGCTGTC GATTTCCCAAAGACTGGAGTGCCGGCTCTGATTCCACATGAGCTACATGTCAAGGAGTAT CCTGACTTCATGGAGAAACTCGACAAAGTCACCTATGAATCAAAGGGTGTGATCGGGAAG CTCTATAGGGAAATAAAGAAGCACACACCACACATAAAGCACTTCACGAGGGAAGTGGCA AGGCGGTCTTATGACACCGATTTGATTGTTGATGGCTATGAAGATTACATTACTGAGGCT ATAGAGTTCAAGGAAGAGTACGATTTCAGGCTGGGTAATCTTATGGACCACTATGGCATA AAAAGTGAAGCTGAGATAATAAGTGGATGTATTCTAAAGATGGCAAAGAATTTCACCAAG AGTAGTGATGCTGATGCAATTAGAATGGCGGTGAGATCTTTGAGGAAAGAAGCTAGGTCG TGGTTCAATGAGATGAGCACAGGAGAGGATGGCCAAGATGCCATGGAGGCCAAGGCCTCT GCTTGGTACCATGTTACTTATCATCAGCAGTACTGGGGCAGCTACAATGAAGGGTATGAT CGGCCGCATCTTATTAGCTTCCCATGGTGCGTATATGACAAGCTTGTGGCCATCAAGCAG GGGAGGAATCTCCTCACGCGGATGGATCGAAACTTGAGGTTCCGTTGAGCATTGCCAGCA GGTTTGCTCCTGTACATATCCCTGATCGTTTGCACTCAGCACTGCCAGCAAGTGTGCATG AACGATCTGATGAATTAAGACGGGCAAACTGCCGCAAGCTGACGCTCTGGCCTACGTGCG TCTTGAAACTTTCGGATGCTGCCGTCTAACTAAATGCATGTTCCTTGATTTCCACTGGGA CCTTGAGTTTGAAGTGTGTAAATATGCTGCTTATGATGTTTTTAGTATTGGACCTCTATC AACTGCCGTTCTAGTTAGTAACAATGGTTGCCAGTCATGGATTACCAGGTTTCGCCGAGC TCCTGTATGGACGACCACGAAGGTCTATTTCTTCCATTACCAAGTGCGAAGTGTCACATC TAACTTGCGTAGTTGCATTCACCTTTTTTCTCAAAAAAAAAATGCATTCGCCCTGCACCA TCATCAATTGCGTAGTTCTGAGCATCAGAAAGCTGTACAACTCTGTATGCATGAACGGCC TGTCAGGAAGCCGGGGCAAGCAGGGAAAACTTGACGTGCAGCGAGATCCTCCCATTGTCG ACGTCGAGCCTTGCACCGGTGACGAGCCAGTACCCGGGGCTGTCCTGCGGCCCCATGGTC ACCTGCGAGGTGTCCACGAGCCTGAGCATCTTCTGCGCGGCGACGGGCACAGGCGGTCCG CCGGCGAGCACGCCGGAGTTGATGTTGACGACGCCCTCCGGCGGGTGCCTCTCCTTCTGC GATCCGCCACTGCCACTGCCACCACCGGAAGAGCCCGGGGAGGAGGAGGGCGACAGGAAG CCGCTGGACTTCCCAGACAGCCTCGCCACGCCGCGCGCCCACCTGGACTGCACGACGGCG CAGCCGGGGAGCTCGGCGTAGAGGAGCCTGAGGTGCAGCACGTGGGTGGCGTCGTGCGCC GCGACGTGGAGCTGCGCGCCCGTCACGACACAGGCCGCGCTCGGGTCGCGGTCTCCGGCG CCGCGCCACCCTGTGTCGTACTTGACCGGCGCGGTGCACACGCGCGCGAACATCCGCCAC TGAACCGGCTCGTAGTACCTGTCGTCGGAGGCCGCGTCCGAACCTCGCCACACCGGCGGT TTGTCGTGCCGCGCGGCGGCGATGAACGTCGGGGTGGTCGATAGGTGCTGCAGGTGGACG GCTAACCTGATCCACAAGCACCGACATCAAGACTCTGTCAGTTCTGAATCGCAAAAAGGA AAAAGAAAAACACCGGGCAGAGGAACTCGCAAACTAGCAGCACGGATTTCATGATCCATC TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC TCTAGTAAATATTTAGTAGAAATCAAATATTGTAGTATTTCTTACCGGTTGTGTTTCTTG CCCTCCAGGTGCAGCCGCATCCCAGTGACCGGCAACTTAGGGACAATCGCCTGCATTTTG TTCTGTCGGTGATCATGCATGCCATTTCGGAAAGAAAAACGAGCATTGGGTACAGATAGA TCCCTGACCTGTGTTGGGCTGACATAGAGCTTGGCACTGAGCGGGCTGAAATGAAGCGCC GGGCTGGAGCCCTGCTGCCGGTTGGAGCACGGGCCGAGGGGCAGCTCGCCGAGCGCCGGC GCCCACATCTTGTGATGCTGGAAATCCAGGAAGTACTTGAGGTCAGCTACAGGAGGCTTA TCTGAAAGTAAACAACCAGTTCTGCCTGTTACCATTACCACGACAAAACCACAAGGCACT CGATCGACACAGAAGGGTCGCTTAGATTGTATTTACATCTGAGGTAGAGGTTGATGGCGT GCGAAAGGTAGCCGGCGCCAGGCACGCCCTTGAGGAGGGAGGTGATGGGCACGGCCTCGA TGCTGATCACGTCGGGCGTCGCCGGCACCGTGAGGAGCCACTCCGAGTGGCTGCCCGCCG TCGTGTCGCCTCCCCTCTTGGAGTATATCACCGTCACGCCCTGATATGGAAATGCGAGAG CCAGAACCTCAGCATGCAACAGAGTGCTCGGGTAGTCGGGTGGTAGAGCAACAGTCGTCA CGTACGGCCGGTACGTACGTACTACCTACCTCTTTGGAGGAGACCAGCGTGGTGATCATC CCTGCTGCTTGGAGCCGCTGCTGCGCCACCAGCTGGGCATCGAACACGTTGAAGGCCTCC GGCATCTGCCACCATTCCAACCTTTGTGTTTAGCGTTTCCCGTCGATTTTCATTTCATCA GCATAAAAGTTTTGG