Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d017959_T003
CDS Infomation

cds chromosome:B73_RefGen_v4:5:210906620:210910522:1 gene:Zm00001d017959 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ankyrin repeat-containing protein

Sequence

ATGGATCTCCCGCCGCTCTCCCACCAAGCGCTCTTCGCCGCCGTCCGATCCGCCGACGCG
GCCGCCGTCCGCGCGCTCCTGGCCGACGCCGAGGCGTCGGGCACCTCCCTGGCCGCGCTC
GCCGCCGCGCAGACGGACGCGGGGGAGACCGCGCTGTACGTCGCCGCGGAGGCCGGCAGC
GAGGAGACCGTGAGCCTCCTCCTCCCGCTCTACGACCTCGAGGCCGCCACCGTCCGCTCA
CGCCTCGATCTCGACGCCTTCCATGTCGCCGCCAAGCAGGGCCACACCGGGGTTGTGAAA
GAGTTTTTGGGGCGGTGGCCAGGGCTTTGCTCAGTCTGTGACTCTTCCAACACTAGCCCC
CTCTACTCCGCTGCTGTCAAGGATCACTTGGATGTGGTAAATGCTATACTGGACACTGAT
GATAGCTGCATAAGGATTGTGCGGAAAAACGGGAAGACATCCCTACATACTGCTGCAAGG
ATTGGATACCATCGTATTGTCAAGGCACTCATAGAGAGGGATCCAGGAATTGTTCCGATC
AAGGATAGGAAGGGACAAACTGCACTTCACATGGCTGTGAAAGGCAAGAACACAGATGTA
GTGGAAGAGTTACTGATGGCTGATGTTTCCATTCTCAATGTGCGGGACAAGAAGGGAAAT
ACTGCTTTGCACATAGCTACACGGAAATGGAGGCCCCAGATGGTACAGCTTCTTCTTAGC
TACGAATCACTTGAAATTAATGCTATCAATATTCAAAATGAAACAGCTATGGATTTGGCT
GACAAAGTTCCTTATGGTGAGTCTAAAACGGAAATAATAGAGTGGTTGACAGAGGCTGGT
GCAAAGAATGCCAGAAATGTGGGGAAAATTGATGAGGCATCAGAACTGAGGAGAACTGTG
AGTGATATCAAGCACAATGTTCAGGCACAGCTTAGCGAGAATGCTAAGACCAATAAACGA
GTGACTGGGATTCGCAAAGAATTGCAGAAACTGCATAGAGAAGCTATTCAGAACACCATC
AATTCAGTCACCATGGTAGCAACCCTGATTGCCTCCATTGCCTTCGTTGCCATATTCAAT
TTGCCAGGTCAATACTTCCAAGATGTGAATAGCGGGGGAGACATTGGTGAGGCTCAAATA
GCCAAGCTTACTGGTTTTCGTGTCTTCTGCCTTCTGAATGCAACTGCTCTCTTCATTTCC
CTCGCGGTGGTCGTCGTGCAGATCACCTTGGTTGCCTGGGAAACTGGTGCCCAGAAGCAA
GTTATCAAGATCGTAAATAAGCTCATGTGGACCGCATGCCTTAGCACAGGTGCGGCTTTT
ATCTCACTGGCATATGTTGTAGTTGGCCCGCAGCATGCCTGGATGGCCTTCACAGTATCA
GCCATCGGAGGTCCGATCATGATTGGAACCCTCCTGTTCCTAGCCTATCTGTTGTTGCGC
CCACGGTTCAAGTTTGGCGAAGACAGACAGCGCCGCATCAAGAGGGCAAGCGGCAGCAAG
TCCTTCTCCTGGTCACTCCATGATGGTTTTTCAGATCTGGAAGCCTTCTCTGATCATGAG
AAGAAGATATATGCCCTGTAG

Peptide Sequence

PEP ID

Zm00001d017959_P003
PEP Infomation

pep chromosome:B73_RefGen_v4:5:210906620:210910522:1 gene:Zm00001d017959 transcript:Zm00001d017959_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ankyrin repeat-containing protein

Sequence

MDLPPLSHQALFAAVRSADAAAVRALLADAEASGTSLAALAAAQTDAGETALYVAAEAGS
EETVSLLLPLYDLEAATVRSRLDLDAFHVAAKQGHTGVVKEFLGRWPGLCSVCDSSNTSP
LYSAAVKDHLDVVNAILDTDDSCIRIVRKNGKTSLHTAARIGYHRIVKALIERDPGIVPI
KDRKGQTALHMAVKGKNTDVVEELLMADVSILNVRDKKGNTALHIATRKWRPQMVQLLLS
YESLEINAINIQNETAMDLADKVPYGESKTEIIEWLTEAGAKNARNVGKIDEASELRRTV
SDIKHNVQAQLSENAKTNKRVTGIRKELQKLHREAIQNTINSVTMVATLIASIAFVAIFN
LPGQYFQDVNSGGDIGEAQIAKLTGFRVFCLLNATALFISLAVVVVQITLVAWETGAQKQ
VIKIVNKLMWTACLSTGAAFISLAYVVVGPQHAWMAFTVSAIGGPIMIGTLLFLAYLLLR
PRFKFGEDRQRRIKRASGSKSFSWSLHDGFSDLEAFSDHEKKIYAL

Transcript Sequence

Transcript ID

Zm00001d017959_T003
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:210906620:210910522:1 gene:Zm00001d017959 gene_biotype:protein_coding transcript_biotype:protein_coding description:Ankyrin repeat-containing protein

Sequence

AGGAAAGCAAAGCAAAACCGAGTCCACATCGGTCCAGGTCCACTTGACCACTACCGCGGC
GACCGCACTCCGCACCACCAATCAATCAGGCGCTGGAGTGACAGCGGCGGCAACACCACG
CCCACGCGGCTGCCGGAGCCGACCCCCCGATGGATCTCCCGCCGCTCTCCCACCAAGCGC
TCTTCGCCGCCGTCCGATCCGCCGACGCGGCCGCCGTCCGCGCGCTCCTGGCCGACGCCG
AGGCGTCGGGCACCTCCCTGGCCGCGCTCGCCGCCGCGCAGACGGACGCGGGGGAGACCG
CGCTGTACGTCGCCGCGGAGGCCGGCAGCGAGGAGACCGTGAGCCTCCTCCTCCCGCTCT
ACGACCTCGAGGCCGCCACCGTCCGCTCACGCCTCGATCTCGACGCCTTCCATGTCGCCG
CCAAGCAGGGCCACACCGGGGTTGTGAAAGAGTTTTTGGGGCGGTGGCCAGGGCTTTGCT
CAGTCTGTGACTCTTCCAACACTAGCCCCCTCTACTCCGCTGCTGTCAAGGATCACTTGG
ATGTGGTAAATGCTATACTGGACACTGATGATAGCTGCATAAGGATTGTGCGGAAAAACG
GGAAGACATCCCTACATACTGCTGCAAGGATTGGATACCATCGTATTGTCAAGGCACTCA
TAGAGAGGGATCCAGGAATTGTTCCGATCAAGGATAGGAAGGGACAAACTGCACTTCACA
TGGCTGTGAAAGGCAAGAACACAGATGTAGTGGAAGAGTTACTGATGGCTGATGTTTCCA
TTCTCAATGTGCGGGACAAGAAGGGAAATACTGCTTTGCACATAGCTACACGGAAATGGA
GGCCCCAGATGGTACAGCTTCTTCTTAGCTACGAATCACTTGAAATTAATGCTATCAATA
TTCAAAATGAAACAGCTATGGATTTGGCTGACAAAGTTCCTTATGGTGAGTCTAAAACGG
AAATAATAGAGTGGTTGACAGAGGCTGGTGCAAAGAATGCCAGAAATGTGGGGAAAATTG
ATGAGGCATCAGAACTGAGGAGAACTGTGAGTGATATCAAGCACAATGTTCAGGCACAGC
TTAGCGAGAATGCTAAGACCAATAAACGAGTGACTGGGATTCGCAAAGAATTGCAGAAAC
TGCATAGAGAAGCTATTCAGAACACCATCAATTCAGTCACCATGGTAGCAACCCTGATTG
CCTCCATTGCCTTCGTTGCCATATTCAATTTGCCAGGTCAATACTTCCAAGATGTGAATA
GCGGGGGAGACATTGGTGAGGCTCAAATAGCCAAGCTTACTGGTTTTCGTGTCTTCTGCC
TTCTGAATGCAACTGCTCTCTTCATTTCCCTCGCGGTGGTCGTCGTGCAGATCACCTTGG
TTGCCTGGGAAACTGGTGCCCAGAAGCAAGTTATCAAGATCGTAAATAAGCTCATGTGGA
CCGCATGCCTTAGCACAGGTGCGGCTTTTATCTCACTGGCATATGTTGTAGTTGGCCCGC
AGCATGCCTGGATGGCCTTCACAGTATCAGCCATCGGAGGTCCGATCATGATTGGAACCC
TCCTGTTCCTAGCCTATCTGTTGTTGCGCCCACGGTTCAAGTTTGGCGAAGACAGACAGC
GCCGCATCAAGAGGGCAAGCGGCAGCAAGTCCTTCTCCTGGTCACTCCATGATGGTTTTT
CAGATCTGGAAGCCTTCTCTGATCATGAGAAGAAGATATATGCCCTGTAGGAAGGTGTAA
CAGTAATTACTCTTGCATGAGAAGAGGCAATTGGGAGAGTGCAAATGGTTCGTGTATATA
TTTGGTTTAGCTGTTTTAACCTTTTAGGTCTGTGGTGAGCCGCAGTTGGACCTTCTCGTG
TACTATATCTAAGAATGAAGAGCTGCACCTATTATGAAGTGCAAGTATTGAGCATGCTTG
AAACTGTTGCCGCTTGTGAATTG