Gene sequences

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SNP Detection
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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d017913_T007
CDS Infomation	cds chromosome:B73_RefGen_v4:5:210045296:210049187:-1 gene:Zm00001d017913 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein NSP-INTERACTING KINASE 1
Sequence	ATGGGGGAGGTTGTTGCTGCTTCCTCCCTGGCCCTGGTGCTGCTCTTCTTCTGCTCTTGC GGGCCTGCAAGCGGCCTTCTCTCCCCCAAGGGTGTAAACTATGAAGTTCAAGCTCTCATG ATGATCAAGAACTACCTCAAGGATCCTCATGGTGTACTGAAGAACTGGGACCAAGACTCT GTGGATCCTTGCAGCTGGACAATGGTCACTTGCTCTCCAGAGAACCTTGTCACCGGCTTA GAAGCACCAAGCCAGAACCTTTCTGGAATTCTCTCCCCAAGTATAGGGAATCTGACCAAC CTTGAGACAGTTCTTCTGCAGAACAACAACATAAACGGGTTAATCCCAGCAGAGATTGGA AAGCTAAGAAAGCTCAAAACGCTTGATCTGTCCAGCAACCACTTCTCTGGAGAAATCCCA AGCTCTGTGGGCCACCTTGAAAGCCTTCAGTATTTGAGGCTTAACAACAACACATTGTCT GGTGCCTTCCCTTCATCATCAACTAATTTGTCACACCTTATTTTCCTGGATCTGTCATAC AATAATTTGAGTGGTCCAATCCCAGGGTCCCTGACAAGGACTTTCAACATTGTAGGGAAT CCACTGATCTGTGCAGCAACCATGGAACAAGATTGTTATGGGTCTTTACCTATGCCAATG TCTTACGGACTGAATAACACACAGGGAACTGTGATTCCTGCAAAAGCTAAGAGCCATAAA GTTGCAATTGCATTTGGTGCTACAACTGCCTGCATCAGCCTTCTGTTCCTTGCCGTTGGT TCACTATTCTGGTGGAGGTGTAGGCGAAACCGGAAGACTCTTTTCAACGTTGATGATCAT CAGCACATAGAGAACGGCAACCTCGGAAATATGAAGCGGTTTCAATTCAGAGAGCTCCAG GCTGCAACAGAAAACTTCAGCAGCAAGAACATATTAGGAAAAGGCGGGTTTGGTATTGTT TACCGGGGGCAGCTTCCAGATGGAAGTCTTGTAGCCGTCAAGAGGCTCAAAGATGGTAAT GCTGCAGGCGGGGAAGCACAGTTTCAGACTGAAGTCGAGATGATCAGCTTAGCAGTGCAC AGGAACCTCCTCAGACTCTATGGGTTCTGCATGACTGCCAGTGAGAGGCTACTGGTCTAT CCGTACATGTCGAATGGGAGTGTCGCGTTGCGCCTGAAAGGGAAGCCACCACTGGACTGG ATCACCAGAAAGAGGATAGCACTTGGGGCAGCACGAGGTCTACTTTATCTGCACGAGCAG TGTGATCCCAAGATCATCCACAGAGACGTTAAGGCAGCAAACATACTGCTAGATGACTGT TGTGAAGCAATTGTCGGGGACTTTGGGCTTGCAAAGCTCCTAGACCACCGTGAATCGCAT GTCACCACAGCTGTGCGCGGAACTGTTGGCCACATCGCTCCCGAGTACCTCTCGACTGGC CAGTCATCTGAGAAAACAGATGTCTTTGGTTTTGGAATTCTGCTGCTGGAGCTGATCACT GGTCAGACTGCACTGGAGTTTGGGAAGTCATCAAATCAGAAGGGAGCCATGTTAGACTGG GTGAAGAAGATGCACCAAGAGAAGCAGCTGGACATACTTGTCGACAAGGGCCTGGGGAGC AAATATGACCGCATTGAGCTGGAGGAGATGGTGCAAGTAGCACTGCTATGTACTCAGTTC CTCCCTGGTCACAGGCCCAAGATGTCAGAGGTGGTCCGGATGCTGGAAGGCGATGGACTT GCAGAGCGGTGGGAGGCGTTACAACACACTGAGTCACACAAATTCAAGGTGCCTGAGTTC TCCTTCAGCCGCTGCCACTCTGACCTGACGGACGACTCGTCACTGTTGGTGCAAGCAGTG GAGCTTTCTGGGCCAAGATGA

Peptide Sequence

PEP ID	Zm00001d017913_P007
PEP Infomation	pep chromosome:B73_RefGen_v4:5:210045296:210049187:-1 gene:Zm00001d017913 transcript:Zm00001d017913_T007 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein NSP-INTERACTING KINASE 1
Sequence	MGEVVAASSLALVLLFFCSCGPASGLLSPKGVNYEVQALMMIKNYLKDPHGVLKNWDQDS VDPCSWTMVTCSPENLVTGLEAPSQNLSGILSPSIGNLTNLETVLLQNNNINGLIPAEIG KLRKLKTLDLSSNHFSGEIPSSVGHLESLQYLRLNNNTLSGAFPSSSTNLSHLIFLDLSY NNLSGPIPGSLTRTFNIVGNPLICAATMEQDCYGSLPMPMSYGLNNTQGTVIPAKAKSHK VAIAFGATTACISLLFLAVGSLFWWRCRRNRKTLFNVDDHQHIENGNLGNMKRFQFRELQ AATENFSSKNILGKGGFGIVYRGQLPDGSLVAVKRLKDGNAAGGEAQFQTEVEMISLAVH RNLLRLYGFCMTASERLLVYPYMSNGSVALRLKGKPPLDWITRKRIALGAARGLLYLHEQ CDPKIIHRDVKAANILLDDCCEAIVGDFGLAKLLDHRESHVTTAVRGTVGHIAPEYLSTG QSSEKTDVFGFGILLLELITGQTALEFGKSSNQKGAMLDWVKKMHQEKQLDILVDKGLGS KYDRIELEEMVQVALLCTQFLPGHRPKMSEVVRMLEGDGLAERWEALQHTESHKFKVPEF SFSRCHSDLTDDSSLLVQAVELSGPR

Transcript Sequence

Transcript ID	Zm00001d017913_T007
Transcript Infomation	cdna chromosome:B73_RefGen_v4:5:210045296:210049187:-1 gene:Zm00001d017913 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein NSP-INTERACTING KINASE 1
Sequence	ATTCCAAACAGGCTCAGGTGGCAGGCATGTTTGTCCCCTCCACCCCCTCGGCCCCGGCCC TTGCTCCTCCCCCCTCCTTTTGTTTTCCTGCTTTGCTTGCGGCCAGAGCACAGGCATCTT CTTTTGGTCATTTGCTTGCTACACTGACAGGTTCTCAGAGCAGAGGCATCCGGCACCCCT GCTCCTGAACTTGTTGCCGAGGAGGCCACACTCTTGCGCTGCCTTGGCAATGGGGGAGGT TGTTGCTGCTTCCTCCCTGGCCCTGGTGCTGCTCTTCTTCTGCTCTTGCGGGCCTGCAAG CGGCCTTCTCTCCCCCAAGGGTGTAAACTATGAAGTTCAAGCTCTCATGATGATCAAGAA CTACCTCAAGGATCCTCATGGTGTACTGAAGAACTGGGACCAAGACTCTGTGGATCCTTG CAGCTGGACAATGGTCACTTGCTCTCCAGAGAACCTTGTCACCGGCTTAGAAGCACCAAG CCAGAACCTTTCTGGAATTCTCTCCCCAAGTATAGGGAATCTGACCAACCTTGAGACAGT TCTTCTGCAGAACAACAACATAAACGGGTTAATCCCAGCAGAGATTGGAAAGCTAAGAAA GCTCAAAACGCTTGATCTGTCCAGCAACCACTTCTCTGGAGAAATCCCAAGCTCTGTGGG CCACCTTGAAAGCCTTCAGTATTTGAGGCTTAACAACAACACATTGTCTGGTGCCTTCCC TTCATCATCAACTAATTTGTCACACCTTATTTTCCTGGATCTGTCATACAATAATTTGAG TGGTCCAATCCCAGGGTCCCTGACAAGGACTTTCAACATTGTAGGGAATCCACTGATCTG TGCAGCAACCATGGAACAAGATTGTTATGGGTCTTTACCTATGCCAATGTCTTACGGACT GAATAACACACAGGGAACTGTGATTCCTGCAAAAGCTAAGAGCCATAAAGTTGCAATTGC ATTTGGTGCTACAACTGCCTGCATCAGCCTTCTGTTCCTTGCCGTTGGTTCACTATTCTG GTGGAGGTGTAGGCGAAACCGGAAGACTCTTTTCAACGTTGATGATCATCAGCACATAGA GAACGGCAACCTCGGAAATATGAAGCGGTTTCAATTCAGAGAGCTCCAGGCTGCAACAGA AAACTTCAGCAGCAAGAACATATTAGGAAAAGGCGGGTTTGGTATTGTTTACCGGGGGCA GCTTCCAGATGGAAGTCTTGTAGCCGTCAAGAGGCTCAAAGATGGTAATGCTGCAGGCGG GGAAGCACAGTTTCAGACTGAAGTCGAGATGATCAGCTTAGCAGTGCACAGGAACCTCCT CAGACTCTATGGGTTCTGCATGACTGCCAGTGAGAGGCTACTGGTCTATCCGTACATGTC GAATGGGAGTGTCGCGTTGCGCCTGAAAGGGAAGCCACCACTGGACTGGATCACCAGAAA GAGGATAGCACTTGGGGCAGCACGAGGTCTACTTTATCTGCACGAGCAGTGTGATCCCAA GATCATCCACAGAGACGTTAAGGCAGCAAACATACTGCTAGATGACTGTTGTGAAGCAAT TGTCGGGGACTTTGGGCTTGCAAAGCTCCTAGACCACCGTGAATCGCATGTCACCACAGC TGTGCGCGGAACTGTTGGCCACATCGCTCCCGAGTACCTCTCGACTGGCCAGTCATCTGA GAAAACAGATGTCTTTGGTTTTGGAATTCTGCTGCTGGAGCTGATCACTGGTCAGACTGC ACTGGAGTTTGGGAAGTCATCAAATCAGAAGGGAGCCATGTTAGACTGGGTGAAGAAGAT GCACCAAGAGAAGCAGCTGGACATACTTGTCGACAAGGGCCTGGGGAGCAAATATGACCG CATTGAGCTGGAGGAGATGGTGCAAGTAGCACTGCTATGTACTCAGTTCCTCCCTGGTCA CAGGCCCAAGATGTCAGAGGTGGTCCGGATGCTGGAAGGCGATGGACTTGCAGAGCGGTG GGAGGCGTTACAACACACTGAGTCACACAAATTCAAGGTGCCTGAGTTCTCCTTCAGCCG CTGCCACTCTGACCTGACGGACGACTCGTCACTGTTGGTGCAAGCAGTGGAGCTTTCTGG GCCAAGATGACACCAACGGAGACGGTCTGTGGCAAGAAGTATCCAGCAGTTGTTTCCCAG TAGAAAATGTAAATAATACAAAGTGAAGCAACTGGTGCTGCATCCTGTCAGAAGTCGAAG CAAATCTCAATCAGCTGAACTGTACAAAGATTAAAAAAAGAGCACAACCTAGTCTAAGCA TGGTACATTACTACATCTACAGATTATGTAACTGTTGGTAGAATAAGGATAGAGCAATGT TTCCATTTTGTTTGTTATTTTCCCCTTTGTATTCTATTACTGTAGTTATAGTTTGTAAAA TGCAAAAACGGTG