Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d017890_T006
CDS Infomation	cds chromosome:B73_RefGen_v4:5:209654584:209671076:-1 gene:Zm00001d017890 gene_biotype:protein_coding transcript_biotype:protein_coding description:Retrotransposon protein Ty1-copia subclass
Sequence	ATGGCCTCCCCTACGGCAGGTGATGCTCCCCTCGCGTCTCCTTCTCCGTCTCCAGCGGCT GACGCGACGGACGCAGCCCTTGCCGCCGCGGCCGCGGTGCCGGATCCAGACATATCTTTC GGGTTCCTGCGCCCGGAGCTCGGGAAGGAGAAGCTGGTCGGGACGGTGGGATTCCACGAG CGCCACGTGTTCCTCTGTTACAAGGGCCCGGAGGTGTGGCCGTCCCACGTTGAGGCCGCA CACTCTGACCGACTCCCTCGCCTCCTCGCCGCCGCCATCAAGGCCCGCAAGCCCAATCTG AAGAAGACCATCAAATTCACCATCTGTGAAGGAGAAGATGGCACTGAATCATCAAATGGA GATGTGTTGATCTTTCCAGATATGATCAGATACAAAGGGCTGACCCATTTTGACGTCGAC AACTTTGTTGAAGAAGTGTTTGTGAAGGATATTGACTGGCTTCCTGGATCTCCTGAGCCT ATAAGTGGTTCCTATGTTTTCGTTTGCTCCCATCAAAGAAGGGATATAAGGTGTGGTATT TGTGGACCTGCTTTGATTAAAAGGTTCAAGGAAGAGATAAATGGACTGGGACTTGATGGT CAGGTGGCTGTCAGTGCATGCTCACACGTGGGAGGTCATAAGTATGCAGGAAATGTCATC ATTTTCAGTTCTGATGCCAAGGGAGAAGTGGTTGGTCATTGGTATGGTTATGTTGTCCCC GACGATGTGCCTGTTTTGCTGCATAAACATATTGGACAAGGAGAAGTTGTGGACCGTCTA TGGAGGGGGCAGATGGGTTTATCTGAGGAGCAGCAGAAGCAAGCTCTCGAGCTTCGGAGC ATGACAAATGGTGGCAAAGAATCCCTTGAAGAAACCGAAACAGACGGTGCTTCTTGTAAC CCTGCAGCAACTGGTGGATGCTGCCAAGGCAATGGTAGCTTCACTTGCTGCCATCCTGAC CTGCCAAAGGAAAAACGGGACAAGAGCATCGCAATTGAGCAGAACCCTAAGAGCTGTGAG GAGAATGGCAAGGAGGGGGGTGGTGCTGGCAGCAAGAAGGGGAATTCAAAGACTTGCCCG ATGCCCACCTGGTTTGAGACCTGGGAGAGAGCTGACACCTATGCTGCTCTTGCTGTTGTC GCAGCTGCCGCAGCTGTGTTTATCTCTTTCAGAATCTACAAGAACCTCAACTGA

Peptide Sequence

PEP ID	Zm00001d017890_P006
PEP Infomation	pep chromosome:B73_RefGen_v4:5:209654584:209671076:-1 gene:Zm00001d017890 transcript:Zm00001d017890_T006 gene_biotype:protein_coding transcript_biotype:protein_coding description:Retrotransposon protein Ty1-copia subclass
Sequence	MASPTAGDAPLASPSPSPAADATDAALAAAAAVPDPDISFGFLRPELGKEKLVGTVGFHE RHVFLCYKGPEVWPSHVEAAHSDRLPRLLAAAIKARKPNLKKTIKFTICEGEDGTESSNG DVLIFPDMIRYKGLTHFDVDNFVEEVFVKDIDWLPGSPEPISGSYVFVCSHQRRDIRCGI CGPALIKRFKEEINGLGLDGQVAVSACSHVGGHKYAGNVIIFSSDAKGEVVGHWYGYVVP DDVPVLLHKHIGQGEVVDRLWRGQMGLSEEQQKQALELRSMTNGGKESLEETETDGASCN PAATGGCCQGNGSFTCCHPDLPKEKRDKSIAIEQNPKSCEENGKEGGGAGSKKGNSKTCP MPTWFETWERADTYAALAVVAAAAAVFISFRIYKNLN

Transcript Sequence

Transcript ID	Zm00001d017890_T006
Transcript Infomation	cdna chromosome:B73_RefGen_v4:5:209654584:209671076:-1 gene:Zm00001d017890 gene_biotype:protein_coding transcript_biotype:protein_coding description:Retrotransposon protein Ty1-copia subclass
Sequence	TTCTATCTTAACTCCCCAAGCAATTTCCATTTCCACCACAACCAGTCTCTTCCTCGCAGC TCGCACCAACCCGCCGCCGTCTACTTACTGCCACTCCGCCTCCTCATGGCCTCCCCTACG GCAGGTGATGCTCCCCTCGCGTCTCCTTCTCCGTCTCCAGCGGCTGACGCGACGGACGCA GCCCTTGCCGCCGCGGCCGCGGTGCCGGATCCAGACATATCTTTCGGGTTCCTGCGCCCG GAGCTCGGGAAGGAGAAGCTGGTCGGGACGGTGGGATTCCACGAGCGCCACGTGTTCCTC TGTTACAAGGGCCCGGAGGTGTGGCCGTCCCACGTTGAGGCCGCACACTCTGACCGACTC CCTCGCCTCCTCGCCGCCGCCATCAAGGCCCGCAAGCCCAATCTGAAGAAGACCATCAAA TTCACCATCTGTGAAGGAGAAGATGGCACTGAATCATCAAATGGAGATGTGTTGATCTTT CCAGATATGATCAGATACAAAGGGCTGACCCATTTTGACGTCGACAACTTTGTTGAAGAA GTGTTTGTGAAGGATATTGACTGGCTTCCTGGATCTCCTGAGCCTATAAGTGGTTCCTAT GTTTTCGTTTGCTCCCATCAAAGAAGGGATATAAGGTGTGGTATTTGTGGACCTGCTTTG ATTAAAAGGTTCAAGGAAGAGATAAATGGACTGGGACTTGATGGTCAGGTGGCTGTCAGT GCATGCTCACACGTGGGAGGTCATAAGTATGCAGGAAATGTCATCATTTTCAGTTCTGAT GCCAAGGGAGAAGTGGTTGGTCATTGGTATGGTTATGTTGTCCCCGACGATGTGCCTGTT TTGCTGCATAAACATATTGGACAAGGAGAAGTTGTGGACCGTCTATGGAGGGGGCAGATG GGTTTATCTGAGGAGCAGCAGAAGCAAGCTCTCGAGCTTCGGAGCATGACAAATGGTGGC AAAGAATCCCTTGAAGAAACCGAAACAGACGGTGCTTCTTGTAACCCTGCAGCAACTGGT GGATGCTGCCAAGGCAATGGTAGCTTCACTTGCTGCCATCCTGACCTGCCAAAGGAAAAA CGGGACAAGAGCATCGCAATTGAGCAGAACCCTAAGAGCTGTGAGGAGAATGGCAAGGAG GGGGGTGGTGCTGGCAGCAAGAAGGGGAATTCAAAGACTTGCCCGATGCCCACCTGGTTT GAGACCTGGGAGAGAGCTGACACCTATGCTGCTCTTGCTGTTGTCGCAGCTGCCGCAGCT GTGTTTATCTCTTTCAGAATCTACAAGAACCTCAACTGAAGAGCTTGAGAGATCTTTGAA GAGGTGCCCGAAACAAGTCTAGGTGAATCAGCGTACTGGTGGTAAAACAATCCGGGACGA GAATAATCTTTACCTGTGTATAGTAATGTGAGGTTTAGAACCTCAAAGTAGCTTATCTGG AGATGGTGATAAAAAGGTGTTGTGGCTACGGTGTTTTCGCGTGTGAACGTCCACTGCTAT CGAAGTTTGGATGCCTTAGCTGCTGGTAATCGTAAGGCATCAAGTAAGCAACATTCACTG TGATGATGTTGTCTTTTGTTTGGGTTTTGGATGTTCTGGAGATTCTAGGTTTTGAA