Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d017868_T010
CDS Infomation	cds chromosome:B73_RefGen_v4:5:209148629:209153884:-1 gene:Zm00001d017868 gene_biotype:protein_coding transcript_biotype:protein_coding description:Chloride channel protein CLC-f
Sequence	ATGCCTGAGAATCTCCAGGTTCAGACCCGTTCAGTTCACAGACACCGTTCAGCCGTTGCG GCGTTGCCGTTGCAGCAGCCAGCAGCGCTCGCCAGTGGACGACCAGCGCGCCGCGCGCAG GTCGCAGGTCAGTGCGACCCGTGGCCCGTGGGGTCGATCGGCCCTTGTCTCTGTTTCATC ACTGCCGTAGTGCCGTGCTCGTGCTCGTGCTCGCGAGGTACCTCGCTCTCTCCTGACTTC CCGCGTCGGCGTCGCCGGCCTCCTCGTATAAGAACCGACATCCGACACGCCGCCTTCGCA CTCGTCAACCTCTCCGCTTTGCCTCCCTCCCTCGCGTCCGCGTTCCCTCCCGCCTCCAGA TCTCGATGCGGCAGCGGCTCCCCTGACAGCGGAGGCGACGCCGGCACCATGTCCTCCTGC GACGACGACCACGCCTCGCTCCTCAGATCCCACGCTGGGGCCTCGTCGCCGTCCTGCCCC TCGCCGCGCGGTTCGGCGGGACATCAGCACCACGCCGACGTCGAGGCGGACGAGGCCACC GTCACCGCCTCCCCGAGGCTCGCCAGCGGCGGCGGGGGTGTGCGCGGTCTCCTGCGCAAC CTCGAGCGCCGCATGTCCGCACGCGGATCTGGGCCTGGGCGTCGCCAGCACCAGCATTAT CAGCAGCTCGATCGCTCCGTGGCGATCGAGTCGCCGCCGTCTCAGCGGCAGCGGGAGAGA GCGGCGGCGGGGGATGACGACGAGCTCGGGGACGGGGCGCCGCCCGAGTGGGCGCTGCTG CTCATCGGCTGCCTCCTCGGGCTCGCCACCGGCATCTGCGTCGCCGCGTTTAACCGCGGG GTTCATGTCATCCATGAATGGGCATGGGCAGGGACTCCCAACGAAGGTGCAGCATGGCTC CGCCTGCAGAAGATAGCTGATACTTGGCACAGGATACTGCTGATCCCGGTGACTGGGGGT GTGGTTGTAGGAATGATGCATGGGTTGCTCGATATATTTGAGCAGCTAAAACTTGTGAAA TCAGGGCAGAGGCAAGGAATCAACTTTGTTGGAGCCATCTTCCCAACCATAAAGGCTGTC CAAGCTGCTGTTACCCTAGGGACTGGCTGTTCCCTGGGACCTGAAGGTCCTAGTGTGGAT ATTGGCAAATCGTGTGCAAATGCATGCTCAGAAATGATGGAGAGTAACCGGGAAAGGCGT ATTGCACTTGTTGCTGCTGGCGCTGCTGCTGGCATTGCTTCAGGCTTCAATGCAGCAGTT GCTGGGTGCTTCTTTGCCATTGAAACTGTATTAAGGCCTCTTAAAGCAGAAAATTCACCT CCATTTACGACTGCAATGATAATATTGGCATCTGTTATATCATCTACTGTTTCAAATGTT TTACTTGGAGCCAGACCAGCTTTTATAGTGCCAGCATATGAGCTCAAATCTGCTGCCGAG CTACCATTGTACCTTATCTTAGGAATGCTATGTGGAGCGGTCAGTGTGGTATTTGATAGA TTGGTTGGATGGTTTTCAAGATTCTTTGGGCACATAAAGGAAAAGTTTGATTTTCCTATA ATAGTGTACCCTGCTTTAGGTGGGCTGGGAGCTGGTATCATAGCTCTGAAATATCCAGGG ATCTTATACTGGGGTTTCACAAATGTTGAAGAAATATTGCATACCGGTAAAAGTGCTTCT GCTCCTGGTATCTGGTTGTTAACTCAACTGGCGGCTGCAAAGGTAGTTGCAACTGCTCTC TGCAAGGGCTCTGGGCTTGTGGGAGGACTATATGCTCCAAGCCTGATGATTGGGGCTGCT GTTGGAGCTGTTTTTGGGGGTTCAGCTGCTTATTTAATAAATTCAGCTTTACCTGGTAAT GCTGCTGTTGCACAGCCACAAGCTTATGCTCTGGTTGGAATGGCTGCTACACTAGCTTCA GTCTGTTCAGTCCCATTGACTTCAGTACTGCTTCTCTTTGAACTGACAAAGGATTACAGG ATTTTGCTTCCGCTCATGGGAGCAGTTGGGTTGGCAATATGGGTTCCTTCAGTAGTAAAC CAGCCAAACGACAGTGAGCCTTCTGGGTTTAGAACATCCAGACGAGGTTATTCTTCAATG TCACCAGAAGAAAGAAATGGCAGCTTAAGGCAAGGTGATGTTGTGGATGATCTTGAGCTC AGTATTATACAAACTGACATGAGTAACTATGGAACTTATAATGCAGAAATGCTTCTGGAT GATTTGAAGGTCTTCCAGGCCATGTCAAAGATATATCTCAAAGTGTTACCATCTGCTACA GTAACAGAAGTTCTTAATCTGTTGCATGATAGACAGCAAAATTGTGCCCTGGTTGTGGAC CCTGAAGATTTTCTTGAAGGAATAATTACATTAGGGGATATACGGCGCATGGGATATGGG TTACATGTGGAAAGTTTCATCAATGGAGATCACCCCAAGGCTGACGATAACTCTTCTTCC ATTTCATTGTGTCTTACTCGAGGATTCCAGTATCGTGGGAGCGAACGTGGATTGTTAACA TGCTTTCCAGATACTGATTTGACCACTGCAAAGAGTCTTATGGAGGCCAGAGGGATAAAG CAACTGCCTGTAGTTAAGCGTGGTGTTGCCCATAGAACTGCAGGAAAGCGCAGGCCGATT GCCCTTCTACATTATGATTCTATTGGTTGCTGCGTGCGGTTTCTTAGTACTACACTCATC TATGCTAATACAAGTATTTTCATTTGCTCGTCAAGGGAGGAAATAGAGAACTGGAAGACC ATATATCAGAGACTGGCTTGTTAA

Peptide Sequence

PEP ID	Zm00001d017868_P010
PEP Infomation	pep chromosome:B73_RefGen_v4:5:209148629:209153884:-1 gene:Zm00001d017868 transcript:Zm00001d017868_T010 gene_biotype:protein_coding transcript_biotype:protein_coding description:Chloride channel protein CLC-f
Sequence	MPENLQVQTRSVHRHRSAVAALPLQQPAALASGRPARRAQVAGQCDPWPVGSIGPCLCFI TAVVPCSCSCSRGTSLSPDFPRRRRRPPRIRTDIRHAAFALVNLSALPPSLASAFPPASR SRCGSGSPDSGGDAGTMSSCDDDHASLLRSHAGASSPSCPSPRGSAGHQHHADVEADEAT VTASPRLASGGGGVRGLLRNLERRMSARGSGPGRRQHQHYQQLDRSVAIESPPSQRQRER AAAGDDDELGDGAPPEWALLLIGCLLGLATGICVAAFNRGVHVIHEWAWAGTPNEGAAWL RLQKIADTWHRILLIPVTGGVVVGMMHGLLDIFEQLKLVKSGQRQGINFVGAIFPTIKAV QAAVTLGTGCSLGPEGPSVDIGKSCANACSEMMESNRERRIALVAAGAAAGIASGFNAAV AGCFFAIETVLRPLKAENSPPFTTAMIILASVISSTVSNVLLGARPAFIVPAYELKSAAE LPLYLILGMLCGAVSVVFDRLVGWFSRFFGHIKEKFDFPIIVYPALGGLGAGIIALKYPG ILYWGFTNVEEILHTGKSASAPGIWLLTQLAAAKVVATALCKGSGLVGGLYAPSLMIGAA VGAVFGGSAAYLINSALPGNAAVAQPQAYALVGMAATLASVCSVPLTSVLLLFELTKDYR ILLPLMGAVGLAIWVPSVVNQPNDSEPSGFRTSRRGYSSMSPEERNGSLRQGDVVDDLEL SIIQTDMSNYGTYNAEMLLDDLKVFQAMSKIYLKVLPSATVTEVLNLLHDRQQNCALVVD PEDFLEGIITLGDIRRMGYGLHVESFINGDHPKADDNSSSISLCLTRGFQYRGSERGLLT CFPDTDLTTAKSLMEARGIKQLPVVKRGVAHRTAGKRRPIALLHYDSIGCCVRFLSTTLI YANTSIFICSSREEIENWKTIYQRLAC

Transcript Sequence

Transcript ID	Zm00001d017868_T010
Transcript Infomation	cdna chromosome:B73_RefGen_v4:5:209148629:209153884:-1 gene:Zm00001d017868 gene_biotype:protein_coding transcript_biotype:protein_coding description:Chloride channel protein CLC-f
Sequence	ATGCCTGAGAATCTCCAGGTTCAGACCCGTTCAGTTCACAGACACCGTTCAGCCGTTGCG GCGTTGCCGTTGCAGCAGCCAGCAGCGCTCGCCAGTGGACGACCAGCGCGCCGCGCGCAG GTCGCAGGTCAGTGCGACCCGTGGCCCGTGGGGTCGATCGGCCCTTGTCTCTGTTTCATC ACTGCCGTAGTGCCGTGCTCGTGCTCGTGCTCGCGAGGTACCTCGCTCTCTCCTGACTTC CCGCGTCGGCGTCGCCGGCCTCCTCGTATAAGAACCGACATCCGACACGCCGCCTTCGCA CTCGTCAACCTCTCCGCTTTGCCTCCCTCCCTCGCGTCCGCGTTCCCTCCCGCCTCCAGA TCTCGATGCGGCAGCGGCTCCCCTGACAGCGGAGGCGACGCCGGCACCATGTCCTCCTGC GACGACGACCACGCCTCGCTCCTCAGATCCCACGCTGGGGCCTCGTCGCCGTCCTGCCCC TCGCCGCGCGGTTCGGCGGGACATCAGCACCACGCCGACGTCGAGGCGGACGAGGCCACC GTCACCGCCTCCCCGAGGCTCGCCAGCGGCGGCGGGGGTGTGCGCGGTCTCCTGCGCAAC CTCGAGCGCCGCATGTCCGCACGCGGATCTGGGCCTGGGCGTCGCCAGCACCAGCATTAT CAGCAGCTCGATCGCTCCGTGGCGATCGAGTCGCCGCCGTCTCAGCGGCAGCGGGAGAGA GCGGCGGCGGGGGATGACGACGAGCTCGGGGACGGGGCGCCGCCCGAGTGGGCGCTGCTG CTCATCGGCTGCCTCCTCGGGCTCGCCACCGGCATCTGCGTCGCCGCGTTTAACCGCGGG GTTCATGTCATCCATGAATGGGCATGGGCAGGGACTCCCAACGAAGGTGCAGCATGGCTC CGCCTGCAGAAGATAGCTGATACTTGGCACAGGATACTGCTGATCCCGGTGACTGGGGGT GTGGTTGTAGGAATGATGCATGGGTTGCTCGATATATTTGAGCAGCTAAAACTTGTGAAA TCAGGGCAGAGGCAAGGAATCAACTTTGTTGGAGCCATCTTCCCAACCATAAAGGCTGTC CAAGCTGCTGTTACCCTAGGGACTGGCTGTTCCCTGGGACCTGAAGGTCCTAGTGTGGAT ATTGGCAAATCGTGTGCAAATGCATGCTCAGAAATGATGGAGAGTAACCGGGAAAGGCGT ATTGCACTTGTTGCTGCTGGCGCTGCTGCTGGCATTGCTTCAGGCTTCAATGCAGCAGTT GCTGGGTGCTTCTTTGCCATTGAAACTGTATTAAGGCCTCTTAAAGCAGAAAATTCACCT CCATTTACGACTGCAATGATAATATTGGCATCTGTTATATCATCTACTGTTTCAAATGTT TTACTTGGAGCCAGACCAGCTTTTATAGTGCCAGCATATGAGCTCAAATCTGCTGCCGAG CTACCATTGTACCTTATCTTAGGAATGCTATGTGGAGCGGTCAGTGTGGTATTTGATAGA TTGGTTGGATGGTTTTCAAGATTCTTTGGGCACATAAAGGAAAAGTTTGATTTTCCTATA ATAGTGTACCCTGCTTTAGGTGGGCTGGGAGCTGGTATCATAGCTCTGAAATATCCAGGG ATCTTATACTGGGGTTTCACAAATGTTGAAGAAATATTGCATACCGGTAAAAGTGCTTCT GCTCCTGGTATCTGGTTGTTAACTCAACTGGCGGCTGCAAAGGTAGTTGCAACTGCTCTC TGCAAGGGCTCTGGGCTTGTGGGAGGACTATATGCTCCAAGCCTGATGATTGGGGCTGCT GTTGGAGCTGTTTTTGGGGGTTCAGCTGCTTATTTAATAAATTCAGCTTTACCTGGTAAT GCTGCTGTTGCACAGCCACAAGCTTATGCTCTGGTTGGAATGGCTGCTACACTAGCTTCA GTCTGTTCAGTCCCATTGACTTCAGTACTGCTTCTCTTTGAACTGACAAAGGATTACAGG ATTTTGCTTCCGCTCATGGGAGCAGTTGGGTTGGCAATATGGGTTCCTTCAGTAGTAAAC CAGCCAAACGACAGTGAGCCTTCTGGGTTTAGAACATCCAGACGAGGTTATTCTTCAATG TCACCAGAAGAAAGAAATGGCAGCTTAAGGCAAGGTGATGTTGTGGATGATCTTGAGCTC AGTATTATACAAACTGACATGAGTAACTATGGAACTTATAATGCAGAAATGCTTCTGGAT GATTTGAAGGTCTTCCAGGCCATGTCAAAGATATATCTCAAAGTGTTACCATCTGCTACA GTAACAGAAGTTCTTAATCTGTTGCATGATAGACAGCAAAATTGTGCCCTGGTTGTGGAC CCTGAAGATTTTCTTGAAGGAATAATTACATTAGGGGATATACGGCGCATGGGATATGGG TTACATGTGGAAAGTTTCATCAATGGAGATCACCCCAAGGCTGACGATAACTCTTCTTCC ATTTCATTGTGTCTTACTCGAGGATTCCAGTATCGTGGGAGCGAACGTGGATTGTTAACA TGCTTTCCAGATACTGATTTGACCACTGCAAAGAGTCTTATGGAGGCCAGAGGGATAAAG CAACTGCCTGTAGTTAAGCGTGGTGTTGCCCATAGAACTGCAGGAAAGCGCAGGCCGATT GCCCTTCTACATTATGATTCTATTGGTTGCTGCGTGCGGTTTCTTAGTACTACACTCATC TATGCTAATACAAGTATTTTCATTTGCTCGTCAAGGGAGGAAATAGAGAACTGGAAGACC ATATATCAGAGACTGGCTTGTTAA