Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d017863_T007
CDS Infomation

cds chromosome:B73_RefGen_v4:5:209096678:209099969:1 gene:Zm00001d017863 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein-tyrosine-phosphatase IBR5
Sequence

ATGAGGAAACGTGAGCGGGAGAACCCGTGCGGGATCTGCGGGCACTACCACAAGTACGAG
GAGGGGGAGGTATGCGGGGTGTGCGGCCACCGCTGGAAACCGTCGGACGGGGAGGGCGCC
CCGTCGAGGCACGAGTCCGCCTTCCCCACAGAGGTGCTCAAGGACTTTCTCTTCCTCGGG
AGCTACGACAACGCCTCACGCTCCGAGGTCCTCAGAACGCTCAGTATCTCCCACATCCTT
AATACTGTGCCTGATTGCCACAATCTGTACAAGAATTCATTCACATATCACAGTCTTCAA
CGGGACAGGCCTTTGGATTTTGATGAGGCAAACCAATATCTAGAGAAATGTGAAAGAGAT
AAATCGCGTGTTCTTGTTCATTGCATGACTGGAAAAAACAGGTCTGCTGCTATTGTTGCA
GCCTTCTTGATGAAGTCTAGAGGGTGGAGACTTGCACAATCTTTTCAATGGGTGAAAGAT
CGAAGACCACAGGTTCAACTGACAGATGCTTCTCAGAAGGAGCTTTTGGAGTATGAGCTG
AAGCTTTTCGGACCCAGTACTCAAACCTTGGTTCCCACTGAATCATTTGCTTCTCTTGGA
TTTGGTTATACAAAACCAGCAGGTGACATGCAAACGCCTGTGTTCAACCAAACGACCATG
CCATCCATATTCGAGCGATTCAACCCAAATGATCGCCCCACCAATTTCACTTTTGGAGTT
GAGAGGAAAGCAGAAGCTAACCCTCGAGATAACAATAGTGATGGCAGGGTAAACCCAACT
TCAACGGAGAACCTGATGGACAGCTCTTAA

Peptide Sequence

PEP ID

Zm00001d017863_P007
PEP Infomation

pep chromosome:B73_RefGen_v4:5:209096678:209099969:1 gene:Zm00001d017863 transcript:Zm00001d017863_T007 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein-tyrosine-phosphatase IBR5
Sequence

MRKRERENPCGICGHYHKYEEGEVCGVCGHRWKPSDGEGAPSRHESAFPTEVLKDFLFLG
SYDNASRSEVLRTLSISHILNTVPDCHNLYKNSFTYHSLQRDRPLDFDEANQYLEKCERD
KSRVLVHCMTGKNRSAAIVAAFLMKSRGWRLAQSFQWVKDRRPQVQLTDASQKELLEYEL
KLFGPSTQTLVPTESFASLGFGYTKPAGDMQTPVFNQTTMPSIFERFNPNDRPTNFTFGV
ERKAEANPRDNNSDGRVNPTSTENLMDSS

Transcript Sequence

Transcript ID

Zm00001d017863_T007
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:209096678:209099969:1 gene:Zm00001d017863 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein-tyrosine-phosphatase IBR5
Sequence

AAAATCGACCTTGTCGACCCGGATCCGAGCTAGGCACCCGCACGACCACCCGCCTCCTGC
CGGTCACCGGGACCTAGCATCGCCGGGCGGCGGCGGGGGAGGGGAAGGTAGGCGATGAGG
AAACGTGAGCGGGAGAACCCGTGCGGGATCTGCGGGCACTACCACAAGTACGAGGAGGGG
GAGGTATGCGGGGTGTGCGGCCACCGCTGGAAACCGTCGGACGGGGAGGGCGCCCCGTCG
AGGCACGAGTCCGCCTTCCCCACAGAGGTGCTCAAGGACTTTCTCTTCCTCGGGAGCTAC
GACAACGCCTCACGCTCCGAGGTCCTCAGAACGCTCAGTATCTCCCACATCCTTAATACT
GTGCCTGATTGCCACAATCTGTACAAGAATTCATTCACATATCACAGTCTTCAACGGGAC
AGGCCTTTGGATTTTGATGAGGCAAACCAATATCTAGAGAAATGTGAAAGAGATAAATCG
CGTGTTCTTGTTCATTGCATGACTGGAAAAAACAGGTCTGCTGCTATTGTTGCAGCCTTC
TTGATGAAGTCTAGAGGGTGGAGACTTGCACAATCTTTTCAATGGGTGAAAGATCGAAGA
CCACAGGTTCAACTGACAGATGCTTCTCAGAAGGAGCTTTTGGAGTATGAGCTGAAGCTT
TTCGGACCCAGTACTCAAACCTTGGTTCCCACTGAATCATTTGCTTCTCTTGGATTTGGT
TATACAAAACCAGCAGGTGACATGCAAACGCCTGTGTTCAACCAAACGACCATGCCATCC
ATATTCGAGCGATTCAACCCAAATGATCGCCCCACCAATTTCACTTTTGGAGTTGAGAGG
AAAGCAGAAGCTAACCCTCGAGATAACAATAGTGATGGCAGGGTAAACCCAACTTCAACG
GAGAACCTGATGGACAGCTCTTAAGATGATTTCACGATGTCGCTGTTGAATCTCCTTGTT
CCAGAAGTAAACCCGCTGTAATCTGCATGTCGCGGAAGTAAACCTACTGCTCGGTGCCTC
GGTGCACCGAATACTTATCCGGTGTCTAGGTTTCAGGGAGGTTTTGCCCTTGTCGCATGA
GAAATGGTTCTCTGGAAACCGATCTTTGCTTTAGAATGACTGTATGAAATAGATGTTTGT
G