Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d017860_T006
CDS Infomation

cds chromosome:B73_RefGen_v4:5:209065554:209070347:1 gene:Zm00001d017860 gene_biotype:protein_coding transcript_biotype:protein_coding description:Fimbrin-1
Sequence

ATGTCCGGATTCGTCGGGGTCGTCGTGTCCGACCCTTCGCTGCAGGGGCAGTTCACGCAG
GTCGAGCTCCGATCGCTCAAGGCCAAGTTCGTGTCTCTGAAGAGAGATTCCGGCCATGTC
ACCACTAAGAACCTGCCGGGGCTGATGAAGAAGCTGAGGGGGCTCAATGAGGTGGTCTCC
GAGGAGGAGATCGCGGCCTTCCTGTCGGAGTCGTACCCTGATAGCGATCACGAGATTGAA
TTCGAATCCTTCCTCCGGGAGTATCTTAATCTGCAGGCTCAGGTGAGTGCCAAGGAAGGT
GGTGCCGGCGGTGGCAGGGGTGGCAAGCCGTCGTTTCTCAAGTCCAGCATCACTACGCTG
CTGCACAATCTCAACCAGGCAGAGAAATCTTCGTATGTCGCACACATCAATACTTACCTC
CGTGAAGACCCATTCCTGAAGAAGTACTTGCCCATCGAACCGTCTGGAAATCAGCTGTTC
GATCTCATCCGGGATGGGGTTCTGCTCTGCAAACTGATCAATGTAGCTGTACCTGGGACC
ATTGATGAGAGAGCGATAAATAAGAAAAGAGTTCTTAACCCATGGGAGAGAAACGAAAAC
CACACACTCTGCCTCAATTCTGCCAAGGCCATTGGATGTACTGTTGTCAACATTGGCACA
CAGGATTTGGTGGAGGGAAGGCCTCATTTAGTTCTTGGATTGATATCACAAATCATAAAG
ATTCAACTTTTAGCTGATCTGAATCTCAAGAAGACACCGCAGCTGGTGGAGCTATTTGAT
GACAGCAAGGATATAGATGAGGTTTTGAGCTTGTCACCAGAAAAGATGCTACTTCGGTGG
ATGAACCATCATCTGAAAAAAGCTGGCTACAAGAAAACTGTTAACAATTTCTCTTCAGAT
GTCAAGGATGGTGAAGCCTATGCTTACCTTTTGAAAGCTCTTGCTCCAGAGCATTCCCCT
GAAACTACATTGGACACCAAGGATCCGAACGAAAGGGCAAAACTAGTACTTGAACAAGCA
GAGAAGTTGGACTGTAAGAGATACTTGACCCCAAAGGATATCACTGAGGGATCTGCCAAT
CTAAATCTTGCATTTGTTGCACAAATATTCCAGCACAGGAATGGTCTGACCAGTGACACC
AAACAAGTTACCCTCACACAGACAGCAACACATGATGATGTTCTATTATCTAGAGAAGAA
AGAGCCTTTCGAATGTGGATCAACAGCCTTGGGGTTGAATCATATGTGAACAATGTCTTC
GAAGATGTTCGCAACGGATGGGTACTTCTTGAAGTGCTTGACAAGGTGTCTCATGGATCT
GTCAATTGGAAGCTGGCATCAAAACCTCCAATTAAATTGCCATTTAGAAAACTGGAGAAT
TGCAACCAAGTTGTAAAAATTGGGAAGCAGTTAAAGTTTTCTTTAGTAAATCTAGCTGGA
AACGATATTGTTCAGGGAAACAAGAAATTGATTGTTGCACTTCTGTGGCAATTGATGAGA
TTCAATATCCTCCAGCTGTTAAACAAACTGAGATTCCACTCCCAAGGGTCCGAAGGAAAA
GAAATTTCTGATGCCGATATTCTAAACTGGGCCAACTGCAAAGTGAAGGCATCCGGAAGA
ACATCTCGTATAGAAAGTTTCAAGGACAAGAGCTTATCGAATGGAATGTTCTTCCTTGAT
CTTCTTAGCACAGTACAGCCAAGGGTTGTGAACTGGAAAGTTGTTACTAAAGGGGAAACT
GATGAGGACAAGAAGCTGAATGCTACCTACATCATTAGTGTTGCAAGGAAGATTGGATGC
TCTGTGTTTCTGTTGCCAGAGGACATCATTGAGGTGAATCAGAAGATGATCCTAACACTT
ACTGCTAGCATTATGTATTGGAGCCTACAGAAACAGCCCCAGTCACAGTCTGAATTGACA
GAACAATCAGAACCATCTAGCATGACTTCTGACGCAGCCTCTGAAGTTGCCTCGGAGGAT
GGTGCTTCAACGACAGCACCGTCCGAGTCAGAAGAGGTGAACTCGCTGTCTGATAGCATA
TCGAATTTGACAACGGATGATGCTACTTCAAACGCCCCATCTGCTGAAAACGGAAATGGT
GTGGCAGGGTCCTGA

Peptide Sequence

PEP ID

Zm00001d017860_P006
PEP Infomation

pep chromosome:B73_RefGen_v4:5:209065554:209070347:1 gene:Zm00001d017860 transcript:Zm00001d017860_T006 gene_biotype:protein_coding transcript_biotype:protein_coding description:Fimbrin-1
Sequence

MSGFVGVVVSDPSLQGQFTQVELRSLKAKFVSLKRDSGHVTTKNLPGLMKKLRGLNEVVS
EEEIAAFLSESYPDSDHEIEFESFLREYLNLQAQVSAKEGGAGGGRGGKPSFLKSSITTL
LHNLNQAEKSSYVAHINTYLREDPFLKKYLPIEPSGNQLFDLIRDGVLLCKLINVAVPGT
IDERAINKKRVLNPWERNENHTLCLNSAKAIGCTVVNIGTQDLVEGRPHLVLGLISQIIK
IQLLADLNLKKTPQLVELFDDSKDIDEVLSLSPEKMLLRWMNHHLKKAGYKKTVNNFSSD
VKDGEAYAYLLKALAPEHSPETTLDTKDPNERAKLVLEQAEKLDCKRYLTPKDITEGSAN
LNLAFVAQIFQHRNGLTSDTKQVTLTQTATHDDVLLSREERAFRMWINSLGVESYVNNVF
EDVRNGWVLLEVLDKVSHGSVNWKLASKPPIKLPFRKLENCNQVVKIGKQLKFSLVNLAG
NDIVQGNKKLIVALLWQLMRFNILQLLNKLRFHSQGSEGKEISDADILNWANCKVKASGR
TSRIESFKDKSLSNGMFFLDLLSTVQPRVVNWKVVTKGETDEDKKLNATYIISVARKIGC
SVFLLPEDIIEVNQKMILTLTASIMYWSLQKQPQSQSELTEQSEPSSMTSDAASEVASED
GASTTAPSESEEVNSLSDSISNLTTDDATSNAPSAENGNGVAGS

Transcript Sequence

Transcript ID

Zm00001d017860_T006
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:209065554:209070347:1 gene:Zm00001d017860 gene_biotype:protein_coding transcript_biotype:protein_coding description:Fimbrin-1
Sequence

ACCACTTCCCCTCTGCGCCTCGGCCCCCACGAAATCTGGAGACCAGGACGCCATTGCTCA
CCTTTTCCGTCCAGCGCAAGGAAACCGCGCGCCAGAGAGGGTGAGGGATTGCCGTCACCA
ATCCGGAAGCCGCTTCAGGCGCGCGTGGAATCGCCCCGTGGCCGGCGGGGATGTCCGGAT
TCGTCGGGGTCGTCGTGTCCGACCCTTCGCTGCAGGGGCAGTTCACGCAGGTCGAGCTCC
GATCGCTCAAGGCCAAGTTCGTGTCTCTGAAGAGAGATTCCGGCCATGTCACCACTAAGA
ACCTGCCGGGGCTGATGAAGAAGCTGAGGGGGCTCAATGAGGTGGTCTCCGAGGAGGAGA
TCGCGGCCTTCCTGTCGGAGTCGTACCCTGATAGCGATCACGAGATTGAATTCGAATCCT
TCCTCCGGGAGTATCTTAATCTGCAGGCTCAGGTGAGTGCCAAGGAAGGTGGTGCCGGCG
GTGGCAGGGGTGGCAAGCCGTCGTTTCTCAAGTCCAGCATCACTACGCTGCTGCACAATC
TCAACCAGGCAGAGAAATCTTCGTATGTCGCACACATCAATACTTACCTCCGTGAAGACC
CATTCCTGAAGAAGTACTTGCCCATCGAACCGTCTGGAAATCAGCTGTTCGATCTCATCC
GGGATGGGGTTCTGCTCTGCAAACTGATCAATGTAGCTGTACCTGGGACCATTGATGAGA
GAGCGATAAATAAGAAAAGAGTTCTTAACCCATGGGAGAGAAACGAAAACCACACACTCT
GCCTCAATTCTGCCAAGGCCATTGGATGTACTGTTGTCAACATTGGCACACAGGATTTGG
TGGAGGGAAGGCCTCATTTAGTTCTTGGATTGATATCACAAATCATAAAGATTCAACTTT
TAGCTGATCTGAATCTCAAGAAGACACCGCAGCTGGTGGAGCTATTTGATGACAGCAAGG
ATATAGATGAGGTTTTGAGCTTGTCACCAGAAAAGATGCTACTTCGGTGGATGAACCATC
ATCTGAAAAAAGCTGGCTACAAGAAAACTGTTAACAATTTCTCTTCAGATGTCAAGGATG
GTGAAGCCTATGCTTACCTTTTGAAAGCTCTTGCTCCAGAGCATTCCCCTGAAACTACAT
TGGACACCAAGGATCCGAACGAAAGGGCAAAACTAGTACTTGAACAAGCAGAGAAGTTGG
ACTGTAAGAGATACTTGACCCCAAAGGATATCACTGAGGGATCTGCCAATCTAAATCTTG
CATTTGTTGCACAAATATTCCAGCACAGGAATGGTCTGACCAGTGACACCAAACAAGTTA
CCCTCACACAGACAGCAACACATGATGATGTTCTATTATCTAGAGAAGAAAGAGCCTTTC
GAATGTGGATCAACAGCCTTGGGGTTGAATCATATGTGAACAATGTCTTCGAAGATGTTC
GCAACGGATGGGTACTTCTTGAAGTGCTTGACAAGGTGTCTCATGGATCTGTCAATTGGA
AGCTGGCATCAAAACCTCCAATTAAATTGCCATTTAGAAAACTGGAGAATTGCAACCAAG
TTGTAAAAATTGGGAAGCAGTTAAAGTTTTCTTTAGTAAATCTAGCTGGAAACGATATTG
TTCAGGGAAACAAGAAATTGATTGTTGCACTTCTGTGGCAATTGATGAGATTCAATATCC
TCCAGCTGTTAAACAAACTGAGATTCCACTCCCAAGGGTCCGAAGGAAAAGAAATTTCTG
ATGCCGATATTCTAAACTGGGCCAACTGCAAAGTGAAGGCATCCGGAAGAACATCTCGTA
TAGAAAGTTTCAAGGACAAGAGCTTATCGAATGGAATGTTCTTCCTTGATCTTCTTAGCA
CAGTACAGCCAAGGGTTGTGAACTGGAAAGTTGTTACTAAAGGGGAAACTGATGAGGACA
AGAAGCTGAATGCTACCTACATCATTAGTGTTGCAAGGAAGATTGGATGCTCTGTGTTTC
TGTTGCCAGAGGACATCATTGAGGTGAATCAGAAGATGATCCTAACACTTACTGCTAGCA
TTATGTATTGGAGCCTACAGAAACAGCCCCAGTCACAGTCTGAATTGACAGAACAATCAG
AACCATCTAGCATGACTTCTGACGCAGCCTCTGAAGTTGCCTCGGAGGATGGTGCTTCAA
CGACAGCACCGTCCGAGTCAGAAGAGGTGAACTCGCTGTCTGATAGCATATCGAATTTGA
CAACGGATGATGCTACTTCAAACGCCCCATCTGCTGAAAACGGAAATGGTGTGGCAGGGT
CCTGATGGTTATGATTATGCAAACCCTGTTCTTTTTTTCCCCATACAGTGCTGTTACAGG
AAATAGTGCTTTCATGATGCCCAAAGTTGTCGCTACCAGAAGCGATATTTTTAATACTTC
TGCTTCCTGAGCATGGTAGCTTGATAGATACAACAGTCACAGATAGATATAGATGCCTTT
TGTTCATTGGATCCGCTTATACTATAGTGGGGGAAGATAATAGTATGTGTCGCTGGCTGG
GTATTTTCTGTATTTCTGGCATACACCCATGCAAAATTTACTACCTCCTCTGTATCTTAT
CGGTCAATTCGTTCATATGTTTATTGGACTAGTCAAAGCTTGTAATGCTGTTGCTGCTCT
GAACCGTGCCTGTACATAACATATGCTTAAAAAGGTTTTGCATTGTCCTTTAGTTTCTG