Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d017698_T007
CDS Infomation

cds chromosome:B73_RefGen_v4:5:204485481:204490418:-1 gene:Zm00001d017698 gene_biotype:protein_coding transcript_biotype:protein_coding description:Oligopeptide transporter 4
Sequence

ATGGGTGAGATAGGCACGGACCAGCTGGGTCTGGCCGAGGCCGAGGCCGCCGCCGCCGCT
GTGAAGGAGGAGGGCATCCTCGACGACGACGAGGAGACGTCGCCGATAGAGCAGGTGCGG
CTGACGGTGCCGACGACGGACGACTCGTCGCTGCCGGTGTGGACGTTCCGGATGTGGAGC
ATCGGGCTGCTGTCGTGCGCGCTCATGAGCTTCCTCAACCAGTTCTTCTCGTACCGGACG
GAGCCGCTGGTGGTGACGCAGATCACGGTGCAGGTGGCGTCGCTGCCCGTGGGCCACTTC
ATGGCCCGGGCGCTGCCGCGCACCAGGTTCCGGGCGCCCGCGCTGCTGGGCGGCGGGGCG
TGGAGCCTCAACCCGGGGCCCTTCAACATCAAGGAGCACGTGCTCATCTGCATCTTCGCC
AACGCCGGCTTCGCCTTCGGTGGGGGCAGCGCCTACGCCGTCGGCATCATCAACATCATC
CGCGCCTTCTACGGCCGCCACATCTCCTTCCTCACCGCCTGGCTCCTCGTCGTCACCACG
CAGGTGCTCGGGTACGGGTGGGCAGGGCTGATGCGCAAGTACGTGGTGCAGCCGGCGCAC
ATGTGGTGGCCGGGCACGCTCGTGCAGGTCTCCCTCTTCCAGGCATTGCACGAGAAGAAG
GACGAATCCGCGAAAGCCTCACGCCAGATCTCCCGCTCCAAGTTCTTCGTGGTGGTGCTC
GCGTGCAGCTTCGCATGGTACGCCGTGCCAGGCTACCTGTTCCCGACGCTGACGTCCATC
TCATGGCTGTGCTGGGTCTTCTCCAAGTCCGTGACGGCGCAGCAGCTGGGGTCAGGCATG
AAGGGCCTTGGTCTTTTCGCCTTCACGCTCGACTGGTCCACCGTCTCCTCCTTCCTCTTC
AGCCCCCTCATCTCGCCCTTCTTCGCCACCGCCAACATCTTCGTCGGCTACGTCGTCTTT
GTCTACGTGATCATGCCTATGGCGTACTGGGGGTTCGACCTGTACAGCGCCAAGACATTC
CCCATCTTCTCCTCGCACCTGTTCATGTCGAATGGCACCGAATACGACGTCAAATCGATT
GTGAACAACCAATTCGAGCTTGACCGGCAAGCTTATGACAGGAATGGCAAAGTGAACCTC
AGCGTGTTCTTTGCACTCACTTATGGGTTCAGCTTCGCCACCATTGCGTCGACCATCACT
CATGTCGGGCTCTTCTATGGGAAGGAAATCTACCACCGTTTCAAATCGTCGCAGAGGGAG
AAGCCTGACATCCACACGAGGCTGATGAGCAAGTACAGCGAGATCCCAGCATGGTGGTTT
TACTCTTTGATGGCGCTGTCAATTGCAGTGTCCCTGATCCTCTGCACTGTACTCAAGCGT
GAGGTACAACTCCCATGGTGGGGCCTCATTTTCGCATGTGGCATGGCATTCCTCTTCACA
CTTCCCATCAGCATCATCACCGCGACCACCAACCAGTCGCCTGGCCTGAATGTGATCACC
GAGTATGCCATGGGTCTGATTATGCCGGGCTCTCCTATCGCCGTCGTCTGCTTCAAAGTC
TATGGCTACATGAGCATGTCGCAGGCTGTTGCCTTCCTCTCGGACTTCAAACTTGGCCAC
TATATGAAGATCCCTCCCAAGTCCATGTTCCTTGTTCAGTTTGTTGGTACCATTGTGGCT
GGCACGATCAACATCGGGACAGCGTGGTGGCTGCTTGGCTCCATCCACGGCATCTGCTCG
GATTCACTCCCGCCAGACAGCCCCTGGACATGCCCTAACGACCGTGTGTTCTTCGACGCG
TCAGTCATCTGGGGCCTCGTCGGTCCAATGCGCATCTTTGGGCCAGGTGGGAACTACGGC
GCCGTCAACTGGTTCTTCCTCATCGGCGCGGCAGGCCCGGTCATCGTATACGCTCTCCAC
AGGGTGTTCCCCAGCCAGAGCTGGATACCGCTGATCAACCTTCCGGTGCTCTTTGGTGCA
ACGGCTAGCATGCCCCCAGCGACGGCGGTCAACTACAACTCGTGGCTGCTTGTCGGCACC
ATCTTTAACTTCTTCGTGTTCCGGTACCGCAAGAGGTGGTGGACTCGGTACAACTACATC
CTCTCCGCCGGGCTTGACGCCGGAGTTGCGTTCATGGGGGTGCTGCTGTACTTCTCGCTG
ACCATGCAGAACAAGAGCATCGATTGGTGGGGTACTGCAGGAGAGCACTGCCCTCTTGCC
AAGTGTCCTACTGCCAAAGGGGTGGACTTGGGTGATGGCGTCTGCCCAGTCTTCTAA

Peptide Sequence

PEP ID

Zm00001d017698_P007
PEP Infomation

pep chromosome:B73_RefGen_v4:5:204485481:204490418:-1 gene:Zm00001d017698 transcript:Zm00001d017698_T007 gene_biotype:protein_coding transcript_biotype:protein_coding description:Oligopeptide transporter 4
Sequence

MGEIGTDQLGLAEAEAAAAAVKEEGILDDDEETSPIEQVRLTVPTTDDSSLPVWTFRMWS
IGLLSCALMSFLNQFFSYRTEPLVVTQITVQVASLPVGHFMARALPRTRFRAPALLGGGA
WSLNPGPFNIKEHVLICIFANAGFAFGGGSAYAVGIINIIRAFYGRHISFLTAWLLVVTT
QVLGYGWAGLMRKYVVQPAHMWWPGTLVQVSLFQALHEKKDESAKASRQISRSKFFVVVL
ACSFAWYAVPGYLFPTLTSISWLCWVFSKSVTAQQLGSGMKGLGLFAFTLDWSTVSSFLF
SPLISPFFATANIFVGYVVFVYVIMPMAYWGFDLYSAKTFPIFSSHLFMSNGTEYDVKSI
VNNQFELDRQAYDRNGKVNLSVFFALTYGFSFATIASTITHVGLFYGKEIYHRFKSSQRE
KPDIHTRLMSKYSEIPAWWFYSLMALSIAVSLILCTVLKREVQLPWWGLIFACGMAFLFT
LPISIITATTNQSPGLNVITEYAMGLIMPGSPIAVVCFKVYGYMSMSQAVAFLSDFKLGH
YMKIPPKSMFLVQFVGTIVAGTINIGTAWWLLGSIHGICSDSLPPDSPWTCPNDRVFFDA
SVIWGLVGPMRIFGPGGNYGAVNWFFLIGAAGPVIVYALHRVFPSQSWIPLINLPVLFGA
TASMPPATAVNYNSWLLVGTIFNFFVFRYRKRWWTRYNYILSAGLDAGVAFMGVLLYFSL
TMQNKSIDWWGTAGEHCPLAKCPTAKGVDLGDGVCPVF

Transcript Sequence

Transcript ID

Zm00001d017698_T007
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:204485481:204490418:-1 gene:Zm00001d017698 gene_biotype:protein_coding transcript_biotype:protein_coding description:Oligopeptide transporter 4
Sequence

CACGAACAATGGGTGAGATAGGCACGGACCAGCTGGGTCTGGCCGAGGCCGAGGCCGCCG
CCGCCGCTGTGAAGGAGGAGGGCATCCTCGACGACGACGAGGAGACGTCGCCGATAGAGC
AGGTGCGGCTGACGGTGCCGACGACGGACGACTCGTCGCTGCCGGTGTGGACGTTCCGGA
TGTGGAGCATCGGGCTGCTGTCGTGCGCGCTCATGAGCTTCCTCAACCAGTTCTTCTCGT
ACCGGACGGAGCCGCTGGTGGTGACGCAGATCACGGTGCAGGTGGCGTCGCTGCCCGTGG
GCCACTTCATGGCCCGGGCGCTGCCGCGCACCAGGTTCCGGGCGCCCGCGCTGCTGGGCG
GCGGGGCGTGGAGCCTCAACCCGGGGCCCTTCAACATCAAGGAGCACGTGCTCATCTGCA
TCTTCGCCAACGCCGGCTTCGCCTTCGGTGGGGGCAGCGCCTACGCCGTCGGCATCATCA
ACATCATCCGCGCCTTCTACGGCCGCCACATCTCCTTCCTCACCGCCTGGCTCCTCGTCG
TCACCACGCAGGTGCTCGGGTACGGGTGGGCAGGGCTGATGCGCAAGTACGTGGTGCAGC
CGGCGCACATGTGGTGGCCGGGCACGCTCGTGCAGGTCTCCCTCTTCCAGGCATTGCACG
AGAAGAAGGACGAATCCGCGAAAGCCTCACGCCAGATCTCCCGCTCCAAGTTCTTCGTGG
TGGTGCTCGCGTGCAGCTTCGCATGGTACGCCGTGCCAGGCTACCTGTTCCCGACGCTGA
CGTCCATCTCATGGCTGTGCTGGGTCTTCTCCAAGTCCGTGACGGCGCAGCAGCTGGGGT
CAGGCATGAAGGGCCTTGGTCTTTTCGCCTTCACGCTCGACTGGTCCACCGTCTCCTCCT
TCCTCTTCAGCCCCCTCATCTCGCCCTTCTTCGCCACCGCCAACATCTTCGTCGGCTACG
TCGTCTTTGTCTACGTGATCATGCCTATGGCGTACTGGGGGTTCGACCTGTACAGCGCCA
AGACATTCCCCATCTTCTCCTCGCACCTGTTCATGTCGAATGGCACCGAATACGACGTCA
AATCGATTGTGAACAACCAATTCGAGCTTGACCGGCAAGCTTATGACAGGAATGGCAAAG
TGAACCTCAGCGTGTTCTTTGCACTCACTTATGGGTTCAGCTTCGCCACCATTGCGTCGA
CCATCACTCATGTCGGGCTCTTCTATGGGAAGGAAATCTACCACCGTTTCAAATCGTCGC
AGAGGGAGAAGCCTGACATCCACACGAGGCTGATGAGCAAGTACAGCGAGATCCCAGCAT
GGTGGTTTTACTCTTTGATGGCGCTGTCAATTGCAGTGTCCCTGATCCTCTGCACTGTAC
TCAAGCGTGAGGTACAACTCCCATGGTGGGGCCTCATTTTCGCATGTGGCATGGCATTCC
TCTTCACACTTCCCATCAGCATCATCACCGCGACCACCAACCAGTCGCCTGGCCTGAATG
TGATCACCGAGTATGCCATGGGTCTGATTATGCCGGGCTCTCCTATCGCCGTCGTCTGCT
TCAAAGTCTATGGCTACATGAGCATGTCGCAGGCTGTTGCCTTCCTCTCGGACTTCAAAC
TTGGCCACTATATGAAGATCCCTCCCAAGTCCATGTTCCTTGTTCAGTTTGTTGGTACCA
TTGTGGCTGGCACGATCAACATCGGGACAGCGTGGTGGCTGCTTGGCTCCATCCACGGCA
TCTGCTCGGATTCACTCCCGCCAGACAGCCCCTGGACATGCCCTAACGACCGTGTGTTCT
TCGACGCGTCAGTCATCTGGGGCCTCGTCGGTCCAATGCGCATCTTTGGGCCAGGTGGGA
ACTACGGCGCCGTCAACTGGTTCTTCCTCATCGGCGCGGCAGGCCCGGTCATCGTATACG
CTCTCCACAGGGTGTTCCCCAGCCAGAGCTGGATACCGCTGATCAACCTTCCGGTGCTCT
TTGGTGCAACGGCTAGCATGCCCCCAGCGACGGCGGTCAACTACAACTCGTGGCTGCTTG
TCGGCACCATCTTTAACTTCTTCGTGTTCCGGTACCGCAAGAGGTGGTGGACTCGGTACA
ACTACATCCTCTCCGCCGGGCTTGACGCCGGAGTTGCGTTCATGGGGGTGCTGCTGTACT
TCTCGCTGACCATGCAGAACAAGAGCATCGATTGGTGGGGTACTGCAGGAGAGCACTGCC
CTCTTGCCAAGTGTCCTACTGCCAAAGGGGTGGACTTGGGTGATGGCGTCTGCCCAGTCT
TCTAAGCCTGGAGTTTGATGCCACAACATGCTGCTGTCAGTTCCAAGTTATGTTCATACC
ATAGATTTGTGGTATATACGTCGAGTATAATGCGACTTCTCTTATGTGTAAATGATCATA
TTCTCATGTACT