Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d017573_T005
CDS Infomation

cds chromosome:B73_RefGen_v4:5:200048002:200053057:1 gene:Zm00001d017573 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transcription factor bHLH157
Sequence

ATGCCGGCGTTTGGTGTGGCACAGTTCGGTTCCATGCAAAAGGTTTCTGAAAGCTTGCAG
TTTCTGGATCAAGTTAAAGGTGCAACATTTCTGATGGAAAGTCTTTCATGGTCTCCTTCA
ACAAAAGATGCTCAGAAAGACGCTTTCATGTACAATCCACAATTTCAACTCGATTCTTCA
ACCACTAGAGAGGGTCTTCCACGCACTAAGGCTGAACCAGAAAACTCAAGGTTGGAGAAT
GCAATATCCATAGATTCTCTGAAGAACTTTGCAATTACTTCAAATGGTCTGAATCCTCAC
GTAGTGGCCATGCCAGTGAACTCCAAATCGATAAGTACTGTTAAATTAATTCAAAGTGAC
AGCAATTTGCGGTACAATAATATTTCAGAGAATGCTCAACAATTCAAATCCGCCAAACAA
CCTGATTCTAGTTGGGCAAGTGCAGCTACATGTTTTTCAAATTTGACCAATCTTCAAAGA
ATAGAGCGCGGGCTGTCATGCACACCTAACAAACTACGACATTGCCTTCAAAGTGAAAAA
TCCTCAGGCTTCCTGGATTCGTACTCATCAATAGTTTCTACAGATGCTGAGCTGAAATGC
ACTTTGTTTGACAATGCCACTCCATTTGTTCAGAGTGATGTGATCCAAGAGGTTGGTACT
AGTGGATCTACTCGTGCTTGTGGGCTACATGAATTGCCAAATGAAATATGGGCAGAAATT
GCCTCAGGGGAAATGAAACCAGTCATAAAAGAAGTCAACGAAAATAATGGCTTTCTCGAA
AGCACAGCATTTGATCCAGTCATGAATGATTGGTGGGGTGACACTGCCCTACTAGCAGGA
AACACTTCACATCTGAGTGCTACTACCATGAACTCTGTTTCAGGACAGGCAAGTAGTGAA
CAATTATCAATTGAAGATAGAGGGCTGTTTTCGGAATCTGTCTTTGAGGAGCTGCTTGGC
TTTGATGGTAATGTCGGCCCAGTTATGGATAGCACCGAACCATTAGCTGGTTTTGTCTCC
GGTTGTCATTTGCCGAGGTACAACCTTCAAGGTTCACTTTCAGTGTGCAAGGCACAAGTA
CCGCCATTGATACTCCCTTCCGGTAGCTGTACATCCGAAAATGTTGTGATGGGATCATCA
AAAGAAGCCCCCGTGTCACTGCAGAATTTATCTATGGATGATTGTGGCAGTTTGAACACC
GCAAGTTCCAAGATCAGCCAGGTAAAGAAGCCTGAAGGAGAGAAGGTTGTTAAGAAAAGA
GCTAGGCCAGGTGAAAGTACACGGCCAAGACCAAAGGACCGGCAGCAGATACAAGAGCGT
GTAAAGGAGTTACGTGAGATAGTTCCAAATAGTGCAAAGTGTAGCATTGATGCTTTGTTG
GATCGAACAATCAAGCATATGCTCTTTCTACAAAGTGTGACAAAGTATGCAGAAAAGATT
AAGCAAGCCGATGAACCTAATATGATAAGCAAGGACAATGGTTCTGTATTGAATGATAAC
TCACATGGAGTTGTCTTGAAAGACAATCCAAGTGGTGGAAGCAATGGAGGTGCGACATGG
GCCTATGAGGTTGCAGGGCAGACTATGGTTTGTCCAATAATTGTTGAGGATCTTGCACCG
CCTGGTCAGATGCTTGTTGAGATGCTATGTGAGGAACGCGGATTTTTTCTAGAGATAGCT
GACACCATACGGGGATTTGGACTTACAATCTTGAAGGGATTGATGGAACTTCGTGATGGA
AAAATAATGGCTCGATTTCTTGTTGAGGCAAACAAGAACGTGACGAGGATGGATATATTT
CTATCACTTGTTCAGTTACTGCAGCAGAACAGCCGCAATCGATCTTCGGATCAGCTAGTT
AAGGTCATGAACAATGGCATTCCATCTTTTGTGGATCACCAACAATCTCCTGCATCAATT
CCGGTTTGGCCTTGCTGA

Peptide Sequence

PEP ID

Zm00001d017573_P005
PEP Infomation

pep chromosome:B73_RefGen_v4:5:200048002:200053057:1 gene:Zm00001d017573 transcript:Zm00001d017573_T005 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transcription factor bHLH157
Sequence

MPAFGVAQFGSMQKVSESLQFLDQVKGATFLMESLSWSPSTKDAQKDAFMYNPQFQLDSS
TTREGLPRTKAEPENSRLENAISIDSLKNFAITSNGLNPHVVAMPVNSKSISTVKLIQSD
SNLRYNNISENAQQFKSAKQPDSSWASAATCFSNLTNLQRIERGLSCTPNKLRHCLQSEK
SSGFLDSYSSIVSTDAELKCTLFDNATPFVQSDVIQEVGTSGSTRACGLHELPNEIWAEI
ASGEMKPVIKEVNENNGFLESTAFDPVMNDWWGDTALLAGNTSHLSATTMNSVSGQASSE
QLSIEDRGLFSESVFEELLGFDGNVGPVMDSTEPLAGFVSGCHLPRYNLQGSLSVCKAQV
PPLILPSGSCTSENVVMGSSKEAPVSLQNLSMDDCGSLNTASSKISQVKKPEGEKVVKKR
ARPGESTRPRPKDRQQIQERVKELREIVPNSAKCSIDALLDRTIKHMLFLQSVTKYAEKI
KQADEPNMISKDNGSVLNDNSHGVVLKDNPSGGSNGGATWAYEVAGQTMVCPIIVEDLAP
PGQMLVEMLCEERGFFLEIADTIRGFGLTILKGLMELRDGKIMARFLVEANKNVTRMDIF
LSLVQLLQQNSRNRSSDQLVKVMNNGIPSFVDHQQSPASIPVWPC

Transcript Sequence

Transcript ID

Zm00001d017573_T005
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:200048002:200053057:1 gene:Zm00001d017573 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transcription factor bHLH157
Sequence

CTTGCACTCCCCGCAGATTTTACTACACTAGCCGCTTGCTTCGATACGACCGGTGGTGTA
GCGTGCTGACTGGCTCGATGGCGGAGGCGCTGGGAGCGCTGTGCCGCGCCGGGGGATGGT
CCTACGGCGCGATCTGGCGCCCTGACCGGCGCGACCCACGGTTGCTTACTGTAGGAGAAT
GCCACTGTGAAGATGAAGCGAGAAAAGTGGTCGACAAGATGGTCAATCAGGTCCATGTCG
TCGGAGAAGGGTACGGCAAAATGATCTTTTTCATGTTTGATTCGACTGATGTTTTGCGAG
TCTTCTTGGTTGATATATCTTGGTGCCTGCAAGTTTATATGCTTTTAAGCATATAATTTG
AACAGTACAAGCTCAGGTTTGTTTGGATATATTTTTCCCCTGTCGCACCAGTCTATGCAA
TTATTGTGTACATTTTTTTATTGATATTAGAATGTTCTCTGCTCCATTGAGGATGTACTT
CAAACAACATGTCGACAATGTCACGTCTTTTATTGCAGCCTTATAGGAAGGACTCTAATA
AGTGGGGAGCACCAATGGATTTCTGATGACATCCCCTTCAGTTTCTCTCAGATAAGCGAT
GAAGATAACCTAGGTTTATGTCAGGTGCATATTTCCTTTCATGCTCCCCCTTGATTAGGT
TTTCTCCAGACTGCAGTTTTATTAGATTATATTAACAACACCCTCACATGTGGGAACTTC
AAAAATCAAGTGGAAAAAAGAACTATGGATAAGTAGAAAGGCTTACATTTGTCGTTAGAT
TTTGCATGTTGAAAACGCCTCGAGGCCACATGCATGGTTGTTGAGCAAATGAACACCTAT
GTTGCTAAAATAAATCACTACACATCCAGTTTGTCTACATTTTCTTTGTTTAATTTGTTG
CAGAAAGTAAGAAGTTCCCTTGTTTTAACAAAGGACGATTACCTTCTTGTAGGGTTATAC
TTGGTGGCAACATCAGTTCCTAAGTGGAATAAAGACTATTGCTGTAGTACCTATGCCGGC
GTTTGGTGTGGCACAGTTCGGTTCCATGCAAAAGGTTTCTGAAAGCTTGCAGTTTCTGGA
TCAAGTTAAAGGTGCAACATTTCTGATGGAAAGTCTTTCATGGTCTCCTTCAACAAAAGA
TGCTCAGAAAGACGCTTTCATGTACAATCCACAATTTCAACTCGATTCTTCAACCACTAG
AGAGGGTCTTCCACGCACTAAGGCTGAACCAGAAAACTCAAGGTTGGAGAATGCAATATC
CATAGATTCTCTGAAGAACTTTGCAATTACTTCAAATGGTCTGAATCCTCACGTAGTGGC
CATGCCAGTGAACTCCAAATCGATAAGTACTGTTAAATTAATTCAAAGTGACAGCAATTT
GCGGTACAATAATATTTCAGAGAATGCTCAACAATTCAAATCCGCCAAACAACCTGATTC
TAGTTGGGCAAGTGCAGCTACATGTTTTTCAAATTTGACCAATCTTCAAAGAATAGAGCG
CGGGCTGTCATGCACACCTAACAAACTACGACATTGCCTTCAAAGTGAAAAATCCTCAGG
CTTCCTGGATTCGTACTCATCAATAGTTTCTACAGATGCTGAGCTGAAATGCACTTTGTT
TGACAATGCCACTCCATTTGTTCAGAGTGATGTGATCCAAGAGGTTGGTACTAGTGGATC
TACTCGTGCTTGTGGGCTACATGAATTGCCAAATGAAATATGGGCAGAAATTGCCTCAGG
GGAAATGAAACCAGTCATAAAAGAAGTCAACGAAAATAATGGCTTTCTCGAAAGCACAGC
ATTTGATCCAGTCATGAATGATTGGTGGGGTGACACTGCCCTACTAGCAGGAAACACTTC
ACATCTGAGTGCTACTACCATGAACTCTGTTTCAGGACAGGCAAGTAGTGAACAATTATC
AATTGAAGATAGAGGGCTGTTTTCGGAATCTGTCTTTGAGGAGCTGCTTGGCTTTGATGG
TAATGTCGGCCCAGTTATGGATAGCACCGAACCATTAGCTGGTTTTGTCTCCGGTTGTCA
TTTGCCGAGGTACAACCTTCAAGGTTCACTTTCAGTGTGCAAGGCACAAGTACCGCCATT
GATACTCCCTTCCGGTAGCTGTACATCCGAAAATGTTGTGATGGGATCATCAAAAGAAGC
CCCCGTGTCACTGCAGAATTTATCTATGGATGATTGTGGCAGTTTGAACACCGCAAGTTC
CAAGATCAGCCAGGTAAAGAAGCCTGAAGGAGAGAAGGTTGTTAAGAAAAGAGCTAGGCC
AGGTGAAAGTACACGGCCAAGACCAAAGGACCGGCAGCAGATACAAGAGCGTGTAAAGGA
GTTACGTGAGATAGTTCCAAATAGTGCAAAGTGTAGCATTGATGCTTTGTTGGATCGAAC
AATCAAGCATATGCTCTTTCTACAAAGTGTGACAAAGTATGCAGAAAAGATTAAGCAAGC
CGATGAACCTAATATGATAAGCAAGGACAATGGTTCTGTATTGAATGATAACTCACATGG
AGTTGTCTTGAAAGACAATCCAAGTGGTGGAAGCAATGGAGGTGCGACATGGGCCTATGA
GGTTGCAGGGCAGACTATGGTTTGTCCAATAATTGTTGAGGATCTTGCACCGCCTGGTCA
GATGCTTGTTGAGATGCTATGTGAGGAACGCGGATTTTTTCTAGAGATAGCTGACACCAT
ACGGGGATTTGGACTTACAATCTTGAAGGGATTGATGGAACTTCGTGATGGAAAAATAAT
GGCTCGATTTCTTGTTGAGGCAAACAAGAACGTGACGAGGATGGATATATTTCTATCACT
TGTTCAGTTACTGCAGCAGAACAGCCGCAATCGATCTTCGGATCAGCTAGTTAAGGTCAT
GAACAATGGCATTCCATCTTTTGTGGATCACCAACAATCTCCTGCATCAATTCCGGTTTG
GCCTTGCTGAGAGATAGTAATTGCCACAAACAATTCTTGTAGGCCATATTTTTCAACGAG
CGTTAATGGGTACGGTTTGGAGTTCTGATTAGTACTTGGTGGTGCCCGCCAACTGTTGAT
AGAAACGACAGGTGTTAAGGATGTAGCAAACGCACATTGCGGTGTCCCGTGTCCGAAGAA
AATTCAGTTAGAAGATGCACAGATTCTCATGTAACAGGTTTAGGAACATTGGTGTTGTCG
TTTGTAATTTGGACACTGGTGTAGTGGTGTGAGGTAGCCTATGTTGTTGTGAAGTTGGTG
TGCAGTCAGTAGCAAAATTGCCTGTGTTGCTACGGTAAATAACATTTGAAAATTAAGTG