Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d017399_T003
CDS Infomation

cds chromosome:B73_RefGen_v4:5:194914856:194921330:-1 gene:Zm00001d017399 gene_biotype:protein_coding transcript_biotype:protein_coding description:Vacuolar processing enzyme 1

Sequence

ATGGCTGTGCGGTGGTGCCTCCTGCTGCTCGTGTTAGTGTTGGCTGCGGCCGCGGCTTGC
GCGGAGAAGGGGGAGTGGGACCCGGTGATTCGGATGCCTGGGGAGAAGGAGCCTGCAGGG
TCGCACTCGCACAGCGGCGAGGGATTCGATGGGGAGGTGGATGACGCCGTCGGGACGAGG
TGGGCAGTGCTCGTTGCCGGGTCCTCAGGCTACGGCAACTACAGGCACCAGGCTGATATA
TGTCATGCGTACCAGATACTGCAAAAAGGAGGCATAAAAGAGGAGAACATCGTGGTGTTT
ATGTATGATGACATTGCCAATAGTGCACTCAACCCAAGGCAGGGGGTTATCATCAACCAC
CCAGAGGGCGAAGATGTTTATGCTGGTGTTCCAAAGGACTACACTGGGGACCAAGTCACT
ACTAAGAACTTCTATGCAGTTCTCTTGGGCAACAAAACTGCAGTCACTGGAGGCAGCAGG
AAGGTCATCAATAGTAAAGCAGATGACCATATTTTTATCTATTACTCAGATCACGGGGGC
CCTGGTGTTCTTGGTATGCCCAATCTACCATATCTTTATGCTGGTGACTTCATGAAGGTG
TTAAGAGAAAAACATGCTTCAAATAGCTATGCCAAAATGGTTATATATATTGAAGCATGT
GAAAGTGGCAGTATATTTGAGGGATTAATGCCAGAAGACCTTAATATTTATGTCACGACT
GCATCCAATGCAGAAGAAAGTAGCTGGGGTACATACTGTCCAGGAATGGAACCACCGCCT
CCTTCTGAGTACATTACCTGCCTAGGTGATCTATATAGTGTCTCTTGGATGGAAGACAGT
GAGACTAACAATCTGAAGGAGGAAACAATAAAGGAACAATATGAAGTGGTGAAGAAGCGT
ACTTCAGACTTCAATAGCTATGGTGCAGGCTCTCACGTCATGGAATATGGTGACAAGACC
TTCAAGGGCGAGAAGCTTTACCTTTATCAAGGTTTTGATCCTGCAAATGCCAATGTCACA
AATAAGCTGCTTTGGTCAGGCCAAGAGGCTGTGGTCAACCAAAGGGATGCAGATATTCTC
TTCCTATGGAAGAGGTATGAGCTCTTACATGAGAAGTCTGAAGAGAAGCAGGAAGTTCTG
AGGGAGATCACCGGAACAGTAAGGCATAGGAAGCATCTGGACAACAGCATCAACTTCATC
GGAAAGCTTCTCTTCGGGGCTGAGAAAGGGCCTTCCACACTTGAGGCCGTCAGACCTCCC
GGCCAGCCACTCGTCGATGATTGGGACTGCTTGAAGCAAATGGTACGGATCTTCGAATCC
CATTGCGGATCGCTCACTCAGTACGGTATGAGGCATATGAGGGCGTTCGCAAATATATGC
TACAACTCGGCGAGATGGAGCCCGTTGGCTCAGGGCTACAGCGCTTGA

Peptide Sequence

PEP ID

Zm00001d017399_P003
PEP Infomation

pep chromosome:B73_RefGen_v4:5:194914856:194921330:-1 gene:Zm00001d017399 transcript:Zm00001d017399_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:Vacuolar processing enzyme 1

Sequence

MAVRWCLLLLVLVLAAAAACAEKGEWDPVIRMPGEKEPAGSHSHSGEGFDGEVDDAVGTR
WAVLVAGSSGYGNYRHQADICHAYQILQKGGIKEENIVVFMYDDIANSALNPRQGVIINH
PEGEDVYAGVPKDYTGDQVTTKNFYAVLLGNKTAVTGGSRKVINSKADDHIFIYYSDHGG
PGVLGMPNLPYLYAGDFMKVLREKHASNSYAKMVIYIEACESGSIFEGLMPEDLNIYVTT
ASNAEESSWGTYCPGMEPPPPSEYITCLGDLYSVSWMEDSETNNLKEETIKEQYEVVKKR
TSDFNSYGAGSHVMEYGDKTFKGEKLYLYQGFDPANANVTNKLLWSGQEAVVNQRDADIL
FLWKRYELLHEKSEEKQEVLREITGTVRHRKHLDNSINFIGKLLFGAEKGPSTLEAVRPP
GQPLVDDWDCLKQMVRIFESHCGSLTQYGMRHMRAFANICYNSARWSPLAQGYSA

Transcript Sequence

Transcript ID

Zm00001d017399_T003
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:194914856:194921330:-1 gene:Zm00001d017399 gene_biotype:protein_coding transcript_biotype:protein_coding description:Vacuolar processing enzyme 1

Sequence

GACCCTGCGCTGCTCTGACGCTACATTCCTACCCTCGCGTCGCTGGACTCTAATAGCGCG
ACACGCGAGAGGCAATGGCTGTGCGGTGGTGCCTCCTGCTGCTCGTGTTAGTGTTGGCTG
CGGCCGCGGCTTGCGCGGAGAAGGGGGAGTGGGACCCGGTGATTCGGATGCCTGGGGAGA
AGGAGCCTGCAGGGTCGCACTCGCACAGCGGCGAGGGATTCGATGGGGAGGTGGATGACG
CCGTCGGGACGAGGTGGGCAGTGCTCGTTGCCGGGTCCTCAGGCTACGGCAACTACAGGC
ACCAGGCTGATATATGTCATGCGTACCAGATACTGCAAAAAGGAGGCATAAAAGAGGAGA
ACATCGTGGTGTTTATGTATGATGACATTGCCAATAGTGCACTCAACCCAAGGCAGGGGG
TTATCATCAACCACCCAGAGGGCGAAGATGTTTATGCTGGTGTTCCAAAGGACTACACTG
GGGACCAAGTCACTACTAAGAACTTCTATGCAGTTCTCTTGGGCAACAAAACTGCAGTCA
CTGGAGGCAGCAGGAAGGTCATCAATAGTAAAGCAGATGACCATATTTTTATCTATTACT
CAGATCACGGGGGCCCTGGTGTTCTTGGTATGCCCAATCTACCATATCTTTATGCTGGTG
ACTTCATGAAGGTGTTAAGAGAAAAACATGCTTCAAATAGCTATGCCAAAATGGTTATAT
ATATTGAAGCATGTGAAAGTGGCAGTATATTTGAGGGATTAATGCCAGAAGACCTTAATA
TTTATGTCACGACTGCATCCAATGCAGAAGAAAGTAGCTGGGGTACATACTGTCCAGGAA
TGGAACCACCGCCTCCTTCTGAGTACATTACCTGCCTAGGTGATCTATATAGTGTCTCTT
GGATGGAAGACAGTGAGACTAACAATCTGAAGGAGGAAACAATAAAGGAACAATATGAAG
TGGTGAAGAAGCGTACTTCAGACTTCAATAGCTATGGTGCAGGCTCTCACGTCATGGAAT
ATGGTGACAAGACCTTCAAGGGCGAGAAGCTTTACCTTTATCAAGGTTTTGATCCTGCAA
ATGCCAATGTCACAAATAAGCTGCTTTGGTCAGGCCAAGAGGCTGTGGTCAACCAAAGGG
ATGCAGATATTCTCTTCCTATGGAAGAGGTATGAGCTCTTACATGAGAAGTCTGAAGAGA
AGCAGGAAGTTCTGAGGGAGATCACCGGAACAGTAAGGCATAGGAAGCATCTGGACAACA
GCATCAACTTCATCGGAAAGCTTCTCTTCGGGGCTGAGAAAGGGCCTTCCACACTTGAGG
CCGTCAGACCTCCCGGCCAGCCACTCGTCGATGATTGGGACTGCTTGAAGCAAATGGTAC
GGATCTTCGAATCCCATTGCGGATCGCTCACTCAGTACGGTATGAGGCATATGAGGGCGT
TCGCAAATATATGCTACAACTCGGCGAGATGGAGCCCGTTGGCTCAGGGCTACAGCGCTT
GATCTTCTGAAAGGTTCCGGGGATATGGATGTGTATAGTCTTATCTGTGAAGTACTGTAT
ACTGTAAAAGTTGGCCTTTGTGCCTCTGTAATGTACGTAGCAGTTGTCTTGTATATGTCT
CGGTGGTGTGTTTCTGACTTGGTATGTTTCGCCAGGTCATAATAATAGACGAAAGTGGCC
TGCAGCTTGCAAG