Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d017365_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:5:193679955:193683433:-1 gene:Zm00001d017365 gene_biotype:protein_coding transcript_biotype:protein_coding description:Vacuolar protein-sorting protein bro1

Sequence

ATGTTGCGGCCGCCGTCTCCCGTCCTCTACGTCCAGGAAAAGAAGACCGCCGTCGCCGGA
ATCTTCGGCGACCGCCACTTCTTCGACGCCGCCTCCTTCTCTGACATCCGTGCCGCCCGT
GTCGCCGTCGCGGTCCCGAACCCGCAGGCCCAGCCACCCGCCTCCCGCCGCGCTCTCCTC
CTCCGTTACCATCGCCTCCTCTCCTCCGCCCGTAATGACACCTGCGCCTTCGACGAGACG
TTGTACATCACCTGGCACGACGCCTTCCGCCCCCACCTGAAGCACACAGCCGCCTCCCTC
CGCTTGGAGAAGGCCGCCATCGTGTTCAACGTCGGCGCGGCCGCCTCGAGGATCGCGGCG
ACCGTGAGCCGCGCCACGGAGGAAGGGGTAAGGGCGGCGTGCGGGGAGTTTCAGCGCGCC
GCGGGGGCGTTCCGTGCGGTTGGGGAGATGATGGAAGAGGAAGAGGCGACGACGGTGGAT
ATGAGTTCTCAGGCCTCGGCGATGCTGGAGAGGCTCATGCTCGCGCAGGCGCAGGAGTGC
TGTTTCGAGCGCGCTCTCGACGCAGGGAAATCACAGACAGTGTGCTCGAAAGTGGCTAGG
CAGGCTGCCCTGTACTATGAAGAAGCTTATGCTGCACTTGTTGCTCCTCCGCTGCAGAAC
CACTTTGAAAGATCATGGATATCCCATATCCAATTGAAGGCTGCTCTGTTCAATGCCGAA
GCTTGTTACAGGTACACTATTGAACTCCATGGGAAGACAGAAATTGGTGAGGAGATATCT
CGATTGCAGGTTGGAATTAAGGCACTTGTGGATGCAAAGCGAACTGCAAGAGGAGCTCCT
GGACCCCTGTATGATTATGCTTTCAGACTAGAACAAGATATGAACAAGAACATGGAGACA
GCGAAAGAGGAGAATTTTCGTGTATACCTTTTTCGCATTCCAGCTGCCGAATCATTGGCC
TCTCTACCATCAGCTTCACTCGTCCGTTCTGCATCCTTGAGTGAGATCTTAAATCCAAAG
ACAGAAAATACCACTCAATCTCCATAA

Peptide Sequence

PEP ID

Zm00001d017365_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:5:193679955:193683433:-1 gene:Zm00001d017365 transcript:Zm00001d017365_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Vacuolar protein-sorting protein bro1

Sequence

MLRPPSPVLYVQEKKTAVAGIFGDRHFFDAASFSDIRAARVAVAVPNPQAQPPASRRALL
LRYHRLLSSARNDTCAFDETLYITWHDAFRPHLKHTAASLRLEKAAIVFNVGAAASRIAA
TVSRATEEGVRAACGEFQRAAGAFRAVGEMMEEEEATTVDMSSQASAMLERLMLAQAQEC
CFERALDAGKSQTVCSKVARQAALYYEEAYAALVAPPLQNHFERSWISHIQLKAALFNAE
ACYRYTIELHGKTEIGEEISRLQVGIKALVDAKRTARGAPGPLYDYAFRLEQDMNKNMET
AKEENFRVYLFRIPAAESLASLPSASLVRSASLSEILNPKTENTTQSP

Transcript Sequence

Transcript ID

Zm00001d017365_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:193679955:193683433:-1 gene:Zm00001d017365 gene_biotype:protein_coding transcript_biotype:protein_coding description:Vacuolar protein-sorting protein bro1

Sequence

ATACGCACTGACACGAATCTCACAATTCTCAACTGAACAAGTCCACGTCGAAGAGTCTAA
CGCGTTCGTTGCGCTTGCGCACTTGCGCCGGCCAATCATGTTGCGGCCGCCGTCTCCCGT
CCTCTACGTCCAGGAAAAGAAGACCGCCGTCGCCGGAATCTTCGGCGACCGCCACTTCTT
CGACGCCGCCTCCTTCTCTGACATCCGTGCCGCCCGTGTCGCCGTCGCGGTCCCGAACCC
GCAGGCCCAGCCACCCGCCTCCCGCCGCGCTCTCCTCCTCCGTTACCATCGCCTCCTCTC
CTCCGCCCGTAATGACACCTGCGCCTTCGACGAGACGTTGTACATCACCTGGCACGACGC
CTTCCGCCCCCACCTGAAGCACACAGCCGCCTCCCTCCGCTTGGAGAAGGCCGCCATCGT
GTTCAACGTCGGCGCGGCCGCCTCGAGGATCGCGGCGACCGTGAGCCGCGCCACGGAGGA
AGGGGTAAGGGCGGCGTGCGGGGAGTTTCAGCGCGCCGCGGGGGCGTTCCGTGCGGTTGG
GGAGATGATGGAAGAGGAAGAGGCGACGACGGTGGATATGAGTTCTCAGGCCTCGGCGAT
GCTGGAGAGGCTCATGCTCGCGCAGGCGCAGGAGTGCTGTTTCGAGCGCGCTCTCGACGC
AGGGAAATCACAGACAGTGTGCTCGAAAGTGGCTAGGCAGGCTGCCCTGTACTATGAAGA
AGCTTATGCTGCACTTGTTGCTCCTCCGCTGCAGAACCACTTTGAAAGATCATGGATATC
CCATATCCAATTGAAGGCTGCTCTGTTCAATGCCGAAGCTTGTTACAGGTACACTATTGA
ACTCCATGGGAAGACAGAAATTGGTGAGGAGATATCTCGATTGCAGGTTGGAATTAAGGC
ACTTGTGGATGCAAAGCGAACTGCAAGAGGAGCTCCTGGACCCCTGTATGATTATGCTTT
CAGACTAGAACAAGATATGAACAAGAACATGGAGACAGCGAAAGAGGAGAATTTTCGTGT
ATACCTTTTTCGCATTCCAGCTGCCGAATCATTGGCCTCTCTACCATCAGCTTCACTCGT
CCGTTCTGCATCCTTGAGTGAGATCTTAAATCCAAAGACAGAAAATACCACTCAATCTCC
ATAAATGGATGCATTTGGTATGGTAAAATTATGGAACGGTACACGAATAGTTGCACTTGC
ATGTAAAGATTTCCCTCTATAGCAGAAATTTTAGGGTTGATAATGTTTATTGTCATTCTT
ATTTTGTTGCTTTGCCGGAGCCTAAATAGGTGCACAATTCAGATGATAATATTTGCAGAG
GTGCAACTAATATTTGTGTTGACACGTTTGTGATATGTTATGAACTTATGATGCCCTCGC
ATAGGAAGCTTTTTTACTGCTAGGTAGTTTCTATTTATTTGGTGCTTTTCAACTTGAAGT
CATCATCAGTTCTACCATCCTATCCTGTTGGGGTTTTAAGCAAAATGAGCTATGTGAACT
CTATTCTCTGTGCATAAATATCCTTTTCTTGTTA