Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d017303_T036
CDS Infomation	cds chromosome:B73_RefGen_v4:5:192174546:192191860:-1 gene:Zm00001d017303 gene_biotype:protein_coding transcript_biotype:protein_coding description:Regulator of nonsense transcripts UPF2
Sequence	ATGCAGGAGGCTCGCCTTGAAGAATATAAAAAGATCATTGATCAAAAGACTTCCCTCCGC CGGAGCAACCTAAACCCTGAAAGGCCTGATGCAAACTACCTGAGAACCCTGGACTCCAGT ATCAAGCGAAATACAACAGTTATAAAGAAGTTGAAGACAATAAATGATGAGCAGAAGGAT GGGCTAATGGATGAGTTAAAAAGTGTGAATTTGAGCAAATTTGTCAGCGAAGCAGTTTCT TATATTTGTGAGGCCAAACTTCGCTCTGCTGATATACAAGCTGCTGTTCAGGTTTGCTCA CTCCTTCATCAAAGATACAAGGACTTCTCTCCTTGTCTTATACAAGGTCTACTGAAGGTC TTCTTTCCGGGAAAATCTGTAGATGACTTGGATGCAGATAAAAATTCGAGAGCCATGAAG AAGAGAAGCACACTGAAACTTTTGATTGAACTGTATTTTGTTGGAATTGTCGAAGATGCT AGCATATTTGTAAATATTATAAAAGATCTTACATCAGCGGAACATTTGAAGGACCGTGAA GGAACTCAAACCAACTTGTCTCTTCTATCTACCTTTGCTCGTCAAGGGAAGTTTTTTTTA GGGCTACAACCTCATGGTCAAGAAGCTTATGATGAGTTCTTTAAGGAGCTAAATGTTACC GCTGAGCAGAAGAAGTTCTTTAAGAAAGCCTTGAACTCTTATTATGATACTGTAGCTGAA CTACTGCAATCAGAACATGTGTCTCTTCGTCTAATGGAGGCAGAGAATGCAAAAGTTTTA AGTGCCAAAGGTGAACTAAGTGATGAGAACACAGCCTCATATGAGAAACTCAGGAAGTCT TTTGATCAGTTACTACGTGGTGTATCCTCGTTGGCTGAATCTCTTGATATGCAGCCTCCA GTGATGCCAGATGATGGAAATACAACAAGAGTTACTACAAGAACTGATGCCTTGCCTTCT TCTGGAAAAGATTCATCTGCATTGGAACCTATCTGGGATGATGAAGATACCAAAGCTTTT TATGAATCTTTACCTGATCTCAGAGCATTTGTGCCGGCTGTATTACTGGGAGAGGTTGAG CCAAAGTCGAATGAGCAACATGCTAAGGGCCGTGAGCAATCTAGTGAGTCCACTTCAGAA CAAGAGACTGAACTACATGACGATTTTCAAACTTCTGCAACTGAACATCAACTAGAAGTT AAATTAGATGGTGGAGTGAAAGAGAGTGATGACAAAGATAAAGAGAAGGGAAAGGATGGA GAAAAGGAAAAATCTAAGGAGAAGGATCTGGATAAGAAAAATGACAGAGAGAAGGAGAAA GGAAGAGCCATGGACGGTGCAAGTCTGGATAACATCTTGCAGAGGCTACCGGGATGTGTC AGTCGTGATCTCATTGATCAGTTGACGGTTGAGTTTTGCTACCTAAATTCTAAAGCAAAT CGAAAGAAACTTGCGCGTGCCTTATTCAATGTTAATAGGACTTCACTGGAACTGTTGCCT TACTATTCTCGTTTGGTTGCGACACTATCAACTTGTATGAAAGATGTTCCAAGTATGCTT CTGTCTATGCTTGAAGAGGAGTTCAACTTTTTAATAAATAAGAAGGATCAGATCAACATT GAAACAAAAATAAAAAATATACGGTTTATTGGGGAGTTGTGCAAGTTCAAGATGGCTCCT CCAGCTCTTGTTTTTAGCTGTTTGAAGTCCTGCCTTGATGATTTCAGTCATCATAATATT GATGTGGCTTGCAACCTTCTCGAGACTTGTGGCCGATTTTTGTACCGCTCACCTGAAACT ACGATTCGCATGGCTAACATGCTGGAGATACTGATGAGATTGAAAAATGTTAAGAATTTG GATCCACGTCACAGTACACTTGTAGAAAACGCTTACTACCTTTGTAAACCACCCGAAAGA TCTGCACGGATATCAAAAGTTCGGCCACCTTTGCATCAATACATAAGAAAGTTGCTTTTC TCAGATCTTGACAAATCAAGTGTTGAACATGTTTTGCGCCAACTACGCAAGTTACCTTGG GCAGAATGTCAACAATACCTTCTGAAGTGCTTTCTAAAGGTTCACAAAGGAAAGTACAGC CAAGTTCATCTGATTGCTCTTCTCACTGCTAGTCTCAGCCGCTATCATGATGACTTTGCT GTCGCAGTGGTAGATGAGGTTTTAGAAGAGATAAGGGTTGGATTGGAGTTGAATGACTAT GGGATGCAACAAAGGCGGCTTGCCCACATGCGGTTCCTTGGAGAGCTATACAGCTACAAG CATATAGATTCATCAGTTGTTTTTGATACACTGTACCTTATCATTGTGTTTGGTCATGGA ACACCTGAACAAGATGTGTTGGATCCACCAGAAGATTGCTTCAGAATCAGGTTGATCATT ACACTTTTACAGACCTGTGGTCACTATTTCAGTAAGGGATCTTCAAAAAGGAAGCTGGAC AAATTCTTGCTACACTTTCAAAGATACATTATTAGTAAAGGGCCCTTACCACTCGACATA GAATTTGACATTCAGGATTTATTTGGAGAGCTACGACCAAACATGTCTAGGTATTTATCA ATCGAGGAACTTGTTGCTGCGTTAGTTGAGCTTGAAGAAAATGAGCGCTCAGCCCCAGTA GAAAAGGTTGAAAATGAAAGACACTCGGACAATGAATCTCATAAAAGACAGGCACGAGAT GCTGGTCCATCTGTGAATGGTGGAAGCGCTGCAAATGGAATTGAGGAAAATGGCAAGGAT CATGAAATAGCAGATAGTGAGAGCTATTCAGATAGTGGCAGCATTGATGGACGGGAAGAT GAGGATATATTATCTGAGGATAAATCAAATGATGGCTCAGATAATGAAGGCGACGATGAA GATGATGGCATTCCTGTTGGTTCTGATGAAGATGAAAATGTTGAGGTTAGACAGAAAGTT ATGAAGGTTGATCCTAAGGAGCAAGAAGACTTTGATCGAGAGCTCAAAGCCCTTCTTCAG GAGAGCTTGGAGTCCCGCAAATCAGAGGCCCGTTCAAGGCTCCCTCTGAATATGATGGTA CCGATGAATGTCCTTGAAGGTTCATCAAAAGACTCGAGGGCCACAGAATCTGAGAGTGGA GAAGAAACAGTAGATGAAGAGGGTGGCAATGCTGGGGGTAGCAGCAAGGTGCGCGTTAAG GTGCTAATGAAGAAAGGGCACAAACAACAGACGAGGCAAATGTTAATTCCCGCTGATAGT TCAATCGTTCGAAGCACGAAGCAGCAAGAAGCTGCCGAGCTTGAGGAGAAGCAGAGCATT AAGCGGAGGATCCTTGAATACAATGAAAGGGAGGAGGAAGAACTGAATGGAGCATCACAA ATGGGGAACTGGGGTCAAGGAGCTACCAACACCAGCAGTATCAGATCAGGTGGCCGGGGC AGCTGGGATGGTTCAGCACGGGGAGGTGGTCGACAACGACACCACATCGCCGGTTCTGGT GGTTTCTATCACAGTTATGGCAGGAGAAGAACAGTTAGCTGTGTGAGCTATTTTGTCCTG AGCTTTTTTTTGGCAGGGCCATGCTTCTCTCTATTTAACCGCCTAACGATCAGATTA

Peptide Sequence

PEP ID	Zm00001d017303_P036
PEP Infomation	pep chromosome:B73_RefGen_v4:5:192174546:192191860:-1 gene:Zm00001d017303 transcript:Zm00001d017303_T036 gene_biotype:protein_coding transcript_biotype:protein_coding description:Regulator of nonsense transcripts UPF2
Sequence	MQEARLEEYKKIIDQKTSLRRSNLNPERPDANYLRTLDSSIKRNTTVIKKLKTINDEQKD GLMDELKSVNLSKFVSEAVSYICEAKLRSADIQAAVQVCSLLHQRYKDFSPCLIQGLLKV FFPGKSVDDLDADKNSRAMKKRSTLKLLIELYFVGIVEDASIFVNIIKDLTSAEHLKDRE GTQTNLSLLSTFARQGKFFLGLQPHGQEAYDEFFKELNVTAEQKKFFKKALNSYYDTVAE LLQSEHVSLRLMEAENAKVLSAKGELSDENTASYEKLRKSFDQLLRGVSSLAESLDMQPP VMPDDGNTTRVTTRTDALPSSGKDSSALEPIWDDEDTKAFYESLPDLRAFVPAVLLGEVE PKSNEQHAKGREQSSESTSEQETELHDDFQTSATEHQLEVKLDGGVKESDDKDKEKGKDG EKEKSKEKDLDKKNDREKEKGRAMDGASLDNILQRLPGCVSRDLIDQLTVEFCYLNSKAN RKKLARALFNVNRTSLELLPYYSRLVATLSTCMKDVPSMLLSMLEEEFNFLINKKDQINI ETKIKNIRFIGELCKFKMAPPALVFSCLKSCLDDFSHHNIDVACNLLETCGRFLYRSPET TIRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPERSARISKVRPPLHQYIRKLLF SDLDKSSVEHVLRQLRKLPWAECQQYLLKCFLKVHKGKYSQVHLIALLTASLSRYHDDFA VAVVDEVLEEIRVGLELNDYGMQQRRLAHMRFLGELYSYKHIDSSVVFDTLYLIIVFGHG TPEQDVLDPPEDCFRIRLIITLLQTCGHYFSKGSSKRKLDKFLLHFQRYIISKGPLPLDI EFDIQDLFGELRPNMSRYLSIEELVAALVELEENERSAPVEKVENERHSDNESHKRQARD AGPSVNGGSAANGIEENGKDHEIADSESYSDSGSIDGREDEDILSEDKSNDGSDNEGDDE DDGIPVGSDEDENVEVRQKVMKVDPKEQEDFDRELKALLQESLESRKSEARSRLPLNMMV PMNVLEGSSKDSRATESESGEETVDEEGGNAGGSSKVRVKVLMKKGHKQQTRQMLIPADS SIVRSTKQQEAAELEEKQSIKRRILEYNEREEEELNGASQMGNWGQGATNTSSIRSGGRG SWDGSARGGGRQRHHIAGSGGFYHSYGRRRTVSCVSYFVLSFFLAGPCFSLFNRLTIRL

Transcript Sequence

Transcript ID	Zm00001d017303_T036
Transcript Infomation	cdna chromosome:B73_RefGen_v4:5:192174546:192191860:-1 gene:Zm00001d017303 gene_biotype:protein_coding transcript_biotype:protein_coding description:Regulator of nonsense transcripts UPF2
Sequence	ATGCAGGAGGCTCGCCTTGAAGAATATAAAAAGATCATTGATCAAAAGACTTCCCTCCGC CGGAGCAACCTAAACCCTGAAAGGCCTGATGCAAACTACCTGAGAACCCTGGACTCCAGT ATCAAGCGAAATACAACAGTTATAAAGAAGTTGAAGACAATAAATGATGAGCAGAAGGAT GGGCTAATGGATGAGTTAAAAAGTGTGAATTTGAGCAAATTTGTCAGCGAAGCAGTTTCT TATATTTGTGAGGCCAAACTTCGCTCTGCTGATATACAAGCTGCTGTTCAGGTTTGCTCA CTCCTTCATCAAAGATACAAGGACTTCTCTCCTTGTCTTATACAAGGTCTACTGAAGGTC TTCTTTCCGGGAAAATCTGTAGATGACTTGGATGCAGATAAAAATTCGAGAGCCATGAAG AAGAGAAGCACACTGAAACTTTTGATTGAACTGTATTTTGTTGGAATTGTCGAAGATGCT AGCATATTTGTAAATATTATAAAAGATCTTACATCAGCGGAACATTTGAAGGACCGTGAA GGAACTCAAACCAACTTGTCTCTTCTATCTACCTTTGCTCGTCAAGGGAAGTTTTTTTTA GGGCTACAACCTCATGGTCAAGAAGCTTATGATGAGTTCTTTAAGGAGCTAAATGTTACC GCTGAGCAGAAGAAGTTCTTTAAGAAAGCCTTGAACTCTTATTATGATACTGTAGCTGAA CTACTGCAATCAGAACATGTGTCTCTTCGTCTAATGGAGGCAGAGAATGCAAAAGTTTTA AGTGCCAAAGGTGAACTAAGTGATGAGAACACAGCCTCATATGAGAAACTCAGGAAGTCT TTTGATCAGTTACTACGTGGTGTATCCTCGTTGGCTGAATCTCTTGATATGCAGCCTCCA GTGATGCCAGATGATGGAAATACAACAAGAGTTACTACAAGAACTGATGCCTTGCCTTCT TCTGGAAAAGATTCATCTGCATTGGAACCTATCTGGGATGATGAAGATACCAAAGCTTTT TATGAATCTTTACCTGATCTCAGAGCATTTGTGCCGGCTGTATTACTGGGAGAGGTTGAG CCAAAGTCGAATGAGCAACATGCTAAGGGCCGTGAGCAATCTAGTGAGTCCACTTCAGAA CAAGAGACTGAACTACATGACGATTTTCAAACTTCTGCAACTGAACATCAACTAGAAGTT AAATTAGATGGTGGAGTGAAAGAGAGTGATGACAAAGATAAAGAGAAGGGAAAGGATGGA GAAAAGGAAAAATCTAAGGAGAAGGATCTGGATAAGAAAAATGACAGAGAGAAGGAGAAA GGAAGAGCCATGGACGGTGCAAGTCTGGATAACATCTTGCAGAGGCTACCGGGATGTGTC AGTCGTGATCTCATTGATCAGTTGACGGTTGAGTTTTGCTACCTAAATTCTAAAGCAAAT CGAAAGAAACTTGCGCGTGCCTTATTCAATGTTAATAGGACTTCACTGGAACTGTTGCCT TACTATTCTCGTTTGGTTGCGACACTATCAACTTGTATGAAAGATGTTCCAAGTATGCTT CTGTCTATGCTTGAAGAGGAGTTCAACTTTTTAATAAATAAGAAGGATCAGATCAACATT GAAACAAAAATAAAAAATATACGGTTTATTGGGGAGTTGTGCAAGTTCAAGATGGCTCCT CCAGCTCTTGTTTTTAGCTGTTTGAAGTCCTGCCTTGATGATTTCAGTCATCATAATATT GATGTGGCTTGCAACCTTCTCGAGACTTGTGGCCGATTTTTGTACCGCTCACCTGAAACT ACGATTCGCATGGCTAACATGCTGGAGATACTGATGAGATTGAAAAATGTTAAGAATTTG GATCCACGTCACAGTACACTTGTAGAAAACGCTTACTACCTTTGTAAACCACCCGAAAGA TCTGCACGGATATCAAAAGTTCGGCCACCTTTGCATCAATACATAAGAAAGTTGCTTTTC TCAGATCTTGACAAATCAAGTGTTGAACATGTTTTGCGCCAACTACGCAAGTTACCTTGG GCAGAATGTCAACAATACCTTCTGAAGTGCTTTCTAAAGGTTCACAAAGGAAAGTACAGC CAAGTTCATCTGATTGCTCTTCTCACTGCTAGTCTCAGCCGCTATCATGATGACTTTGCT GTCGCAGTGGTAGATGAGGTTTTAGAAGAGATAAGGGTTGGATTGGAGTTGAATGACTAT GGGATGCAACAAAGGCGGCTTGCCCACATGCGGTTCCTTGGAGAGCTATACAGCTACAAG CATATAGATTCATCAGTTGTTTTTGATACACTGTACCTTATCATTGTGTTTGGTCATGGA ACACCTGAACAAGATGTGTTGGATCCACCAGAAGATTGCTTCAGAATCAGGTTGATCATT ACACTTTTACAGACCTGTGGTCACTATTTCAGTAAGGGATCTTCAAAAAGGAAGCTGGAC AAATTCTTGCTACACTTTCAAAGATACATTATTAGTAAAGGGCCCTTACCACTCGACATA GAATTTGACATTCAGGATTTATTTGGAGAGCTACGACCAAACATGTCTAGGTATTTATCA ATCGAGGAACTTGTTGCTGCGTTAGTTGAGCTTGAAGAAAATGAGCGCTCAGCCCCAGTA GAAAAGGTTGAAAATGAAAGACACTCGGACAATGAATCTCATAAAAGACAGGCACGAGAT GCTGGTCCATCTGTGAATGGTGGAAGCGCTGCAAATGGAATTGAGGAAAATGGCAAGGAT CATGAAATAGCAGATAGTGAGAGCTATTCAGATAGTGGCAGCATTGATGGACGGGAAGAT GAGGATATATTATCTGAGGATAAATCAAATGATGGCTCAGATAATGAAGGCGACGATGAA GATGATGGCATTCCTGTTGGTTCTGATGAAGATGAAAATGTTGAGGTTAGACAGAAAGTT ATGAAGGTTGATCCTAAGGAGCAAGAAGACTTTGATCGAGAGCTCAAAGCCCTTCTTCAG GAGAGCTTGGAGTCCCGCAAATCAGAGGCCCGTTCAAGGCTCCCTCTGAATATGATGGTA CCGATGAATGTCCTTGAAGGTTCATCAAAAGACTCGAGGGCCACAGAATCTGAGAGTGGA GAAGAAACAGTAGATGAAGAGGGTGGCAATGCTGGGGGTAGCAGCAAGGTGCGCGTTAAG GTGCTAATGAAGAAAGGGCACAAACAACAGACGAGGCAAATGTTAATTCCCGCTGATAGT TCAATCGTTCGAAGCACGAAGCAGCAAGAAGCTGCCGAGCTTGAGGAGAAGCAGAGCATT AAGCGGAGGATCCTTGAATACAATGAAAGGGAGGAGGAAGAACTGAATGGAGCATCACAA ATGGGGAACTGGGGTCAAGGAGCTACCAACACCAGCAGTATCAGATCAGGTGGCCGGGGC AGCTGGGATGGTTCAGCACGGGGAGGTGGTCGACAACGACACCACATCGCCGGTTCTGGT GGTTTCTATCACAGTTATGGCAGGAGAAGAACAGTTAGCTGTGTGAGCTATTTTGTCCTG AGCTTTTTTTTGGCAGGGCCATGCTTCTCTCTATTTAACCGCCTAACGATCAGATTAAC