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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d017263_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:5:190974697:190975311:-1 gene:Zm00001d017263 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3
Sequence

ATGGACCTGCCCCCAAACCCCGAGAGCCCGGGAGGCGGTGGTGATGGCGGCGGAGGAGGC
GGAGCCGGTGGATCGAGCGGCGGGGCGTCTTCGTCGGCGCCGGGCGGCGGCACGCCGCAG
ACGCCGAGCCGGTACGAGGCGCAGAAGCGGCGGGACTGGAACACGTTCGGGCAGTACCTG
CGGAACCACCGGCCGCCGCTGAGCCTGGCGCAGTGCAGCGGCGCGCACGTGCTGGAGTTC
CTGCGGTACCTGGACCAGTTCGGCAAGACCAAGGTCCACACGGCGGCGTGCCCCTTCTTC
GGCCACCCGAGCCCGCCCGCGCCGTGCCCCTGCCCGCTGCGCCAGGCGTGGGGCAGCCTC
GACGCGCTGGTGGGCCGCCTCCGCGCCGCCTTCGAGGAGAACGGAGGCCGCCCGGAGTCC
AACCCCTTCGCGGCGCGCGCCGTCCGCCTCTACCTCCGCGAGGTCCGCGAGCACCAGGCC
CGCGCGCGCGGCGTCAGCTACGAGAAGAAGAAGCGCAAGAAGCCGCAGCCAGCTGATCAC
GCCAGCGGGAGCGGAGGACAAGGCCCTCACCACCCGCCGCCTCCGGCACCGCCGCCCGCC
GGCGCGGCGTGCTGA

Peptide Sequence

PEP ID

Zm00001d017263_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:5:190974697:190975311:-1 gene:Zm00001d017263 transcript:Zm00001d017263_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3
Sequence

MDLPPNPESPGGGGDGGGGGGAGGSSGGASSSAPGGGTPQTPSRYEAQKRRDWNTFGQYL
RNHRPPLSLAQCSGAHVLEFLRYLDQFGKTKVHTAACPFFGHPSPPAPCPCPLRQAWGSL
DALVGRLRAAFEENGGRPESNPFAARAVRLYLREVREHQARARGVSYEKKKRKKPQPADH
ASGSGGQGPHHPPPPAPPPAGAAC

Transcript Sequence

Transcript ID

Zm00001d017263_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:5:190974697:190975311:-1 gene:Zm00001d017263 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3
Sequence

ATGGACCTGCCCCCAAACCCCGAGAGCCCGGGAGGCGGTGGTGATGGCGGCGGAGGAGGC
GGAGCCGGTGGATCGAGCGGCGGGGCGTCTTCGTCGGCGCCGGGCGGCGGCACGCCGCAG
ACGCCGAGCCGGTACGAGGCGCAGAAGCGGCGGGACTGGAACACGTTCGGGCAGTACCTG
CGGAACCACCGGCCGCCGCTGAGCCTGGCGCAGTGCAGCGGCGCGCACGTGCTGGAGTTC
CTGCGGTACCTGGACCAGTTCGGCAAGACCAAGGTCCACACGGCGGCGTGCCCCTTCTTC
GGCCACCCGAGCCCGCCCGCGCCGTGCCCCTGCCCGCTGCGCCAGGCGTGGGGCAGCCTC
GACGCGCTGGTGGGCCGCCTCCGCGCCGCCTTCGAGGAGAACGGAGGCCGCCCGGAGTCC
AACCCCTTCGCGGCGCGCGCCGTCCGCCTCTACCTCCGCGAGGTCCGCGAGCACCAGGCC
CGCGCGCGCGGCGTCAGCTACGAGAAGAAGAAGCGCAAGAAGCCGCAGCCAGCTGATCAC
GCCAGCGGGAGCGGAGGACAAGGCCCTCACCACCCGCCGCCTCCGGCACCGCCGCCCGCC
GGCGCGGCGTGCTGA