Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d017186_T003
CDS Infomation	cds chromosome:B73_RefGen_v4:5:188273113:188277915:-1 gene:Zm00001d017186 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:hydroxycinnamoyltransferase6 description:Shikimate O-hydroxycinnamoyltransferase
Sequence	ATGAAGATCACGGTGCGGGGGTCGGAGATGGTGTACCCGGCGGCGGAGACGCCGCGCCGC CGGCTCTGGAACTCGGGGCCCGACCTGGTGGTGCCGCGGTTCCACACGCCCAGCGTCTAC TTCTTCCGCCGCGAGGACGCGGACGGGAACGACCTGGCGGGCGCGGACGGGAGCTTCTTC GACGGGGCGCGGATGCGGCGCGCGCTGGCCGAGGCGCTCGTGCCCTTCTACCCGATGGCC GGCCGGCTGGCGCGCGACGAGGACGGCCGCGTCGAGATCGACTGCAACGCGGGCGGGGTG CTGTTCCAGGAGGCGGACGCGCCCGACGCCACCATCGACTACTTCGGCGACTTCGCGCCC ACCATGGAGCTCAAGCGCCTCATCCCCACCGTCGACTTCACGGACGACATCTCCTCCTTC CCGCTGCTCGTGCTCCAGGTGACCCACTTCAAGTGCGGTGGCGTGGCTATCGGCGTTGGC ATGCAGCACCACGTAGCCGACGGCTTCTCCGGCCTGCACTTCATCAACTCGTGGGCGGAC CTCTGCCGCGGCGTCCCGATCGCCGTCATGCCCTTCATTGACCGCTCGCTCCTCCGCGCG CGCGATCCGCCGACCCCGGCCTACCCGCACATCGAGTACCAGCCGGCGCCCGCCATGCTA TCTGAGCCGCCACAGGCGGCCCTCACGTCCAAGCCGGCGACGCCGCCCACAGCCGTGGCT ATCTTCAAGCTCTCCCGCGCCGAGCTCGTCCGCCTCCGTTCGCAGGTCCCCGCGCGCGAG GGCGCGCCGCGGTTCAGCACGTACGCTGTGCTGGCGGCGCACGTGTGGCGGTGCGCGTCC CTGGCGCGCGGCCTGCCGGCCGACCAGCCCACCAAGCTGTACTGCGCCACGGACGGGCGG CAGCGGCTGCAGCCGCCGCTTCCGGAGGGCTACTTCGGCAACGTGATCTTCACGGCGACG CCGCTGGCCAACGCCGGCACGGTGACGGCCGGGGTGGCAGAGGGCGCGTCCGTGATCCAG GCCGCGTTGGACCGGATGGACGACGGGTACTGCCGGTCAGCGCTGGACTACCTGGAGCTG CAGCCGGACCTGTCGGCGCTGGTCCGCGGGGCGCACACGTTCCGGTGCCCCAACCTGGGG CTCACCAGCTGGGTGCGCCTGCCCATCCACGACGCGGACTTCGGGTGGGGGCGGCCCGTG TTCATGGGCCCCGGCGGCATCGCCTACGAGGGGCTCGCGTTCGTGCTCCCCAGCGCCAAC CGCGACGGCAGCCTGTCCGTGGCCATCTCGCTGCAGGCGGAGCACATGGAGAAGTTCCGG AAGCTCATCTACGACTTCTGA

Peptide Sequence

PEP ID	Zm00001d017186_P003
PEP Infomation	pep chromosome:B73_RefGen_v4:5:188273113:188277915:-1 gene:Zm00001d017186 transcript:Zm00001d017186_T003 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:hydroxycinnamoyltransferase6 description:Shikimate O-hydroxycinnamoyltransferase
Sequence	MKITVRGSEMVYPAAETPRRRLWNSGPDLVVPRFHTPSVYFFRREDADGNDLAGADGSFF DGARMRRALAEALVPFYPMAGRLARDEDGRVEIDCNAGGVLFQEADAPDATIDYFGDFAP TMELKRLIPTVDFTDDISSFPLLVLQVTHFKCGGVAIGVGMQHHVADGFSGLHFINSWAD LCRGVPIAVMPFIDRSLLRARDPPTPAYPHIEYQPAPAMLSEPPQAALTSKPATPPTAVA IFKLSRAELVRLRSQVPAREGAPRFSTYAVLAAHVWRCASLARGLPADQPTKLYCATDGR QRLQPPLPEGYFGNVIFTATPLANAGTVTAGVAEGASVIQAALDRMDDGYCRSALDYLEL QPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGWGRPVFMGPGGIAYEGLAFVLPSAN RDGSLSVAISLQAEHMEKFRKLIYDF

Transcript Sequence

Transcript ID	Zm00001d017186_T003
Transcript Infomation	cdna chromosome:B73_RefGen_v4:5:188273113:188277915:-1 gene:Zm00001d017186 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:hydroxycinnamoyltransferase6 description:Shikimate O-hydroxycinnamoyltransferase
Sequence	AGCTCTCCACCAAGAGCTGTACCCCACACCACTAGGCACTAGTCCACTACCTAACGCTAC CTGCCTTTTCACCGCGTCGTGCGCCACCGCCACGTTGAGCTCGCGTCCGTCCCAGATCCG CCGTGCTCCTCCATCGCTCGCGCAAGATGAAGATCACGGTGCGGGGGTCGGAGATGGTGT ACCCGGCGGCGGAGACGCCGCGCCGCCGGCTCTGGAACTCGGGGCCCGACCTGGTGGTGC CGCGGTTCCACACGCCCAGCGTCTACTTCTTCCGCCGCGAGGACGCGGACGGGAACGACC TGGCGGGCGCGGACGGGAGCTTCTTCGACGGGGCGCGGATGCGGCGCGCGCTGGCCGAGG CGCTCGTGCCCTTCTACCCGATGGCCGGCCGGCTGGCGCGCGACGAGGACGGCCGCGTCG AGATCGACTGCAACGCGGGCGGGGTGCTGTTCCAGGAGGCGGACGCGCCCGACGCCACCA TCGACTACTTCGGCGACTTCGCGCCCACCATGGAGCTCAAGCGCCTCATCCCCACCGTCG ACTTCACGGACGACATCTCCTCCTTCCCGCTGCTCGTGCTCCAGGTGACCCACTTCAAGT GCGGTGGCGTGGCTATCGGCGTTGGCATGCAGCACCACGTAGCCGACGGCTTCTCCGGCC TGCACTTCATCAACTCGTGGGCGGACCTCTGCCGCGGCGTCCCGATCGCCGTCATGCCCT TCATTGACCGCTCGCTCCTCCGCGCGCGCGATCCGCCGACCCCGGCCTACCCGCACATCG AGTACCAGCCGGCGCCCGCCATGCTATCTGAGCCGCCACAGGCGGCCCTCACGTCCAAGC CGGCGACGCCGCCCACAGCCGTGGCTATCTTCAAGCTCTCCCGCGCCGAGCTCGTCCGCC TCCGTTCGCAGGTCCCCGCGCGCGAGGGCGCGCCGCGGTTCAGCACGTACGCTGTGCTGG CGGCGCACGTGTGGCGGTGCGCGTCCCTGGCGCGCGGCCTGCCGGCCGACCAGCCCACCA AGCTGTACTGCGCCACGGACGGGCGGCAGCGGCTGCAGCCGCCGCTTCCGGAGGGCTACT TCGGCAACGTGATCTTCACGGCGACGCCGCTGGCCAACGCCGGCACGGTGACGGCCGGGG TGGCAGAGGGCGCGTCCGTGATCCAGGCCGCGTTGGACCGGATGGACGACGGGTACTGCC GGTCAGCGCTGGACTACCTGGAGCTGCAGCCGGACCTGTCGGCGCTGGTCCGCGGGGCGC ACACGTTCCGGTGCCCCAACCTGGGGCTCACCAGCTGGGTGCGCCTGCCCATCCACGACG CGGACTTCGGGTGGGGGCGGCCCGTGTTCATGGGCCCCGGCGGCATCGCCTACGAGGGGC TCGCGTTCGTGCTCCCCAGCGCCAACCGCGACGGCAGCCTGTCCGTGGCCATCTCGCTGC AGGCGGAGCACATGGAGAAGTTCCGGAAGCTCATCTACGACTTCTGATCTCCAACTCCTC CCCACAAGTCATCAGTACCAGTACGCGCAACACAAAGAAGCAAGAGACCGTTGGGAGTAG GTTGCAGCAATATTCTTTGATTTCACACATAGTTCCTGCACACTTTTCCGTTCCTGCCTG CCCCCTTTGGGCAGGGCGCATACCTTTTGTGCCGAATTATTTACGAGCCCCTGCAATTGT ATGATGAATGAACAATGAATGATACAGATTAATAAGATTAATTA